ID: uc002kge.1_intron_3_0_chr17_80914646_r
GENE: B3GNTL1(6)
chr17:80914596-80915106-


(1)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(4)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(9)
SKIN

Sense strand
TGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAGGTGTGCAGGGCCGCATGGTGTCACCCTTGGGGTCAACCACCTGCTCCGGGGCTGAGGGACAGCTGCTCCGAGCCTTCCCCCTTGGCAGAGTCCACCTGGGCCGTGCTGGCTCCTCGGGGCCTCCAGGGAGCCCAGCCCCCATTCTTGGGGGGAGAACCCCGCTGTCCCTCGTGGGTCTAGGCCTTGGGGTAGCCCACCCTGGTCAGTTCTGCAGTCGGGTGTCAGGCGGGGGTGGCGGGAGCCGGGTTCCTGCTCTGAACACCTGCCGCAGTCTGTGACCCTGGCACGTTATCTGCTGCCCAAGCCCTGGCTCCTGTGTGAGCCAACTTGGTGGCTGCGTGCACCCTGAGGGCGTCTCTCCGGGGACAAGCTCCAGGCTCGGGCAGGACTGATGGCCACTGTCACTCTCAGGAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCC
.........................................................................................................................................................................................................................................................................(((((((((((((((((((((....))))..))))))).)))).))))))....................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................252...............................................................318...............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785TAX577742(Rovira)
total RNA. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343335GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGATC............................................................................................................................................................................................................................................1935.000.0035.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGAT.............................................................................................................................................................................................................................................187.000.007.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGATG............................................................................................................................................................................................................................................194.000.004.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................GTTCCTGCTCTGAACTCTG.....................................................................................................................................................................................................193.000.00---1.00-----------1.00----------1.00---------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGATA............................................................................................................................................................................................................................................192.000.002.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGTGTG............................................................................................................................................................................................................................................192.000.002.00-----------------------------------
..........CAAGATCAGGAAAGGCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00----------
...............................................................................................................................................ACCTGGGCCGTGCTGCTT..............................................................................................................................................................................................................................................................................................................................................................181.000.00----1.00-------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGTAC.............................................................................................................................................................................................................................................181.000.001.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGGTG............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGGACTGATGGCTGGG.............................................................191.000.00-----------------------------1.00------
......................................................................................................................................................................................................................................................................................................GGTTCCTGCTCTGAAGGC.......................................................................................................................................................................................................181.000.001.00-----------------------------------
...................................................................................................................................................................................................................................................................................GCGGGGGTGGCGGGACCG..........................................................................................................................................................................................................................181.000.00------------------1.00-----------------
..................................................................................................................................................................................................................................................................................GGCGGGGGTGGCGGGACCG..........................................................................................................................................................................................................................191.000.00---1.00--------------------------------
......................................................GCAGGGCCGCATGGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------1.00---------------
.......................................................................................................................................................................................AGCCCCCATTCTTGGGGTTG....................................................................................................................................................................................................................................................................................................................201.000.00----------1.00-------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTCGGGCAGGACTGATGGCCAC..............................................................2511.001.00--------------1.00---------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGGTT............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
..............................................................................................................................................................................................................................................................AGTTCTGCAGTCGGGTGTC..............................................................................................................................................................................................................................................1911.001.001.00-----------------------------------
..............................................................................................................................................................................................................................................................AGTTCTGCAGTCGGGTGTTT.............................................................................................................................................................................................................................................201.000.00--1.00---------------------------------
...............................................................................................................................................ACCTGGGCCGTGCTGCT...............................................................................................................................................................................................................................................................................................................................................................171.000.00----1.00-------------------------------
...............................................................................................................................................................................................................................................................GTTCTGCAGTCGGGTGATA.............................................................................................................................................................................................................................................191.000.00-----------------------1.00------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGGGTC............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGATC.............................................................................................................................................................................................................................................181.000.001.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTCACTCTCAGGAAAGACC..........................................2311.001.00-------------------1.00----------------
........................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAGGGCGTCTGG......................................................................................................171.000.00---------------------------1.00--------
............................................TCTCAGGTGTGCAGGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00----------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGTATA............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGTATC............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
.................................................................................................................................................................................................................................................................................AGGCGGGGGTGGCGGTCTG...........................................................................................................................................................................................................................191.000.00------------------------1.00-----------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAGGACTGATGGCCACTGTCACTC......................................................2711.001.00---------1.00--------------------------
................................................................................................................................................................................................................................................................TTCTGCAGTCGGGTGTATG............................................................................................................................................................................................................................................191.000.001.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGCACTTCCGA...........1520.500.50------------------------------0.50-----
...................................................................................................................................................................................................................................................................................GCGGGGGTGGCGGGAGC...........................................................................................................................................................................................................................1730.330.33-------------------------------0.33----
..............................................................................................TCCGGGGCTGAGGGAGT................................................................................................................................................................................................................................................................................................................................................................................................................1760.170.17---------------------------------0.17--
..............................................................................................TCCGGGGCTGAGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17----------------------------------0.17-
.................................................................................................................................................................................................................................................................................AGGCGGGGGTGGCGGG..............................................................................................................................................................................................................................1670.140.14-----------------------------------0.14

Antisense strand
TGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAGGTGTGCAGGGCCGCATGGTGTCACCCTTGGGGTCAACCACCTGCTCCGGGGCTGAGGGACAGCTGCTCCGAGCCTTCCCCCTTGGCAGAGTCCACCTGGGCCGTGCTGGCTCCTCGGGGCCTCCAGGGAGCCCAGCCCCCATTCTTGGGGGGAGAACCCCGCTGTCCCTCGTGGGTCTAGGCCTTGGGGTAGCCCACCCTGGTCAGTTCTGCAGTCGGGTGTCAGGCGGGGGTGGCGGGAGCCGGGTTCCTGCTCTGAACACCTGCCGCAGTCTGTGACCCTGGCACGTTATCTGCTGCCCAAGCCCTGGCTCCTGTGTGAGCCAACTTGGTGGCTGCGTGCACCCTGAGGGCGTCTCTCCGGGGACAAGCTCCAGGCTCGGGCAGGACTGATGGCCACTGTCACTCTCAGGAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCC
.........................................................................................................................................................................................................................................................................(((((((((((((((((((((....))))..))))))).)))).))))))....................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................252...............................................................318...............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785TAX577742(Rovira)
total RNA. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR343335GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................AGCCCAGCCCCCATTCTTTTT........................................................................................................................................................................................................................................................................................................................ 211.000.00-1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................AGGTGTTCAGAGCAGGA..................................................................................................................................................................................................... 1711.001.00--------1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................TATCTGCTGCCCAAGTAC.......................................................................................................................................................... 181.000.00------1.00-----------------------------
.................................................................................................................................................................................GAGCCCAGCCCCCATTCTTTGT........................................................................................................................................................................................................................................................................................................................ 221.000.00-----1.00------------------------------
...................................................................................................................................................................................GCCCAGCCCCCATTCTACTT........................................................................................................................................................................................................................................................................................................................ 201.000.00-1.00----------------------------------
...................................................................................................................................................................................GCCCAGCCCCCATTCTAAC......................................................................................................................................................................................................................................................................................................................... 191.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TGGCTCACACAGGAGCCAGGGCTTGG........................................................................................................................................ 2611.001.00----------------------------1.00-------
........................................................................................................................................................................................................................................................................................GGTGGCGGGAGCCGGGTA..................................................................................................................................................................................................................... 181.000.00---------------------1.00--------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCTCCAGGCTCGATTG............................................................................ 201.000.00--1.00---------------------------------
.................................................................................................................................................................................GAGCCCAGCCCCCATTCTTTT......................................................................................................................................................................................................................................................................................................................... 211.000.00-1.00----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCTCCAGGCTCGACTC............................................................................ 201.000.00--1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAAGACCCAAGCGC................................... 181.000.00----------------------1.00-------------
.........................................................................................................................................................................................................................................................................................................................TGCCGCAGTCTGTGACGC.................................................................................................................................................................................... 181.000.00-----------1.00------------------------
...................................................................................................................................................................................GCCCAGCCCCCATTCTATC......................................................................................................................................................................................................................................................................................................................... 191.000.00-------1.00----------------------------
..................................................................................TCAACCACCTGCTCCGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------1.00-----------------------
......................................................................................................................................................................................................................................................CCCTGGTCAGTTCTGCACTGT.................................................................................................................................................................................................................................................... 211.000.00-----1.00------------------------------
................................................................................................................................................................................................................CCGCTGTCCCTCGTGGTAG............................................................................................................................................................................................................................................................................................ 191.000.00-----------------1.00------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCCGAGCCTGG......................................................................... 1650.200.20--------------------------------0.20---