ID: uc002kay.3_intron_1_0_chr17_79618716_r.3p
GENE: PDE6G(2)
chr17:79618666-79618915-


(3)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
XRN.ip

Sense strand
AGCAGACTCACCCTGGGTCTGTGAGGGAAGCCTCCTCAGATGCGCCAAGCCCTGGGAGGTTGGGGAGGAGGCGGGTCTCTGCCCACTGGGCTCCCAGCCAAACACCTCATCTCCTAGGAAGGCTAGAGATGACCTCGGGCCTCAGGCTGACTGAGCCAGGACTGGGCCCGGCCATGTCCCTGAGTGCTCTGTCCTTGCAGGTTTGGGGACGACATCCCTGGAATGGAAGGCCTGGGAACAGGTATGACGG
..........................................................................................................................................................((.(((((.((((.(((........)))...)))).))))).))....................................................
.....................................................................................................................................................150...............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.....................................................................................................................................................................................GAGTGCTCTGTCCTTGCAGG.................................................2017.007.00-7.00----------------------
..........................................................................................................................................................GCCAGGACTGGGCCCGGC..............................................................................1817.007.005.00-----2.00-----------------
....................................................................................................................................................GACTGAGCCAGGACTGGGCC..................................................................................2016.006.006.00-----------------------
.............................................................................................................................................TCAGGCTGACTGAGCCAGGA.........................................................................................2015.005.005.00-----------------------
..........................................................................................................................................................GCCAGGACTGGGCCCGGCC.............................................................................1915.005.005.00-----------------------
........................................................................................................................................................GAGCCAGGACTGGGCCCGGC..............................................................................2013.003.003.00-----------------------
......................................................................................................................................................................................AGTGCTCTGTCCTTGCAGGT................................................2013.003.00-3.00----------------------
............................................................................................................................................................CAGGACTGGGCCCGGCCAT...........................................................................1912.002.00---1.00-------------1.00------
......................................................................................................................................................................................AGTGCTCTGTCCTTGCAGGTGATG............................................2412.003.00-------2.00----------------
....................................................................................................................................................GACTGAGCCAGGACTGG.....................................................................................1712.002.00-----1.00-------1.00----------
..................................................................................................................................GACCTCGGGCCTCAGGC.......................................................................................................1731.331.33--------1.33---------------
..............................................................................................................................................CAGGCTGACTGAGCCAGGACTGGGCCCGGC..............................................................................3011.001.00---1.00--------------------
..........................................................................................................................................................GCCAGGACTGGGCCCGG...............................................................................1721.001.00-----1.00------------------
...............................................................................................................................................AGGCTGACTGAGCCAGGACTGG.....................................................................................2211.001.00---1.00--------------------
..........................................................................................................................................................GCCAGGACTGGGCCCTGCC.............................................................................191.000.001.00-----------------------
.............................................................................................................................................................AGGACTGGGCCCGGCCGG...........................................................................181.000.00--------------1.00---------
............................................................................................................................................................................................CTGTCCTTGCAGGTTTGGG...........................................1911.001.00-1.00----------------------
..................................................................................................................................................CTGACTGAGCCAGGACTGG.....................................................................................1911.001.00----------------1.00-------
........................................................................................................................................GGGCCTCAGGCTGACACCG...............................................................................................191.000.00-----------1.00------------
..................................................................................................................................................CTGACTGAGCCAGGACTG......................................................................................1811.001.00----1.00-------------------
......................................................................................................................................................................CCCGGCCATGTCCCTGAGTG................................................................2011.001.00-1.00----------------------
................................................................................................................CCTAGGAAGGCTAGAGA.........................................................................................................................1711.001.001.00-----------------------
................................................................................................................................................................................TCCCTGAGTGCTCTGTCCTTGCAGGTTTG.............................................2911.001.00----1.00-------------------
......................................................................................................................................TCGGGCCTCAGGCTGGGCA.................................................................................................191.000.00------------1.00-----------
.............................................................................................................................................................AGGACTGGGCCCGGCCATG..........................................................................1911.001.00---------------1.00--------
........................................................................................................................................GGGCCTCAGGCTGACTGAGCCAGGACTGG.....................................................................................2911.001.00---1.00--------------------
...................................................................................................................................ACCTCGGGCCTCAGGC.......................................................................................................1630.670.67--------0.33-----------0.33---
..............................................................................................................................AGATGACCTCGGGCCGAT..........................................................................................................1850.600.20---------0.20-----------0.20-0.20
..............................................................................................................................AGATGACCTCGGGCCGATC.........................................................................................................1950.600.20---0.20---------------0.40----
.............................................................................................................................................................................ATGTCCCTGAGTGCTCTG...........................................................1820.500.50---0.50--------------------
..............................................................................................................................AGATGACCTCGGGCC.............................................................................................................1550.200.20----------------------0.20-

Antisense strand
AGCAGACTCACCCTGGGTCTGTGAGGGAAGCCTCCTCAGATGCGCCAAGCCCTGGGAGGTTGGGGAGGAGGCGGGTCTCTGCCCACTGGGCTCCCAGCCAAACACCTCATCTCCTAGGAAGGCTAGAGATGACCTCGGGCCTCAGGCTGACTGAGCCAGGACTGGGCCCGGCCATGTCCCTGAGTGCTCTGTCCTTGCAGGTTTGGGGACGACATCCCTGGAATGGAAGGCCTGGGAACAGGTATGACGG
..........................................................................................................................................................((.(((((.((((.(((........)))...)))).))))).))....................................................
.....................................................................................................................................................150...............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.............................................................GGGGAGGAGGCGGGTCTCAG......................................................................................................................................................................... 204.000.00--4.00---------------------
................................GCTTGGCGCATCTGAGGA........................................................................................................................................................................................................ 1811.001.00----1.00-------------------
.....................................................................................................................................................................................GAGTGCTCTGTCCTTGTG................................................... 181.000.00----------1.00-------------
..............................CCTCCTCAGATGCGCCAAGCCCTGGGA................................................................................................................................................................................................. 271.000.00---------1.00--------------
.......................................................................................................................................................................................GTGCTCTGTCCTTGCGACA................................................ 191.000.00------------------1.00-----
.................................................................................................CCAAACACCTCATCTCCGGGG.................................................................................................................................... 211.000.00--1.00---------------------