ID: uc002jyt.1_intron_29_0_chr17_78934006_f.3p
GENE: RPTOR(30)
chr17:78934994-78935243+


(2)
AGO2.ip
(6)
B-CELL
(3)
BRAIN
(10)
BREAST
(8)
CELL-LINE
(5)
CERVIX
(1)
HEART
(4)
LIVER
(1)
OTHER
(15)
SKIN
(1)
XRN.ip

Sense strand
CACAGGGGGTCTCTGCTGGAGCAGGTCACCTGGAGGGGGCTCTGACCCTGCGTGAGCACTAGCCCCTCGTGGGGAGCGGACGGGCGAGGGCCTGCGGACCCGCTGGCACAGGCAGACCTGGGCAGCTCCCGGTGAGAGCCCCGAAGGGTGGGGACGTCCTTCAGGGAAGCCCCACGCTGAGCGTGCCCCCTCCCCTACAGCCGCGTCATGACGTACCGGGAGCACACAGCCTGGGTGGTGAAGGCCTCCC
....................................................................(((((...((..(((((....)))))))..))))).....((((....))))..................................................................................................................................
.................................................................66.....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532874(GSM532874)
G699T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
......................................................................GGGGAGCGGACGGGCGGC..................................................................................................................................................................187.000.00------1.001.00----------1.00---------1.00-------1.00--1.00--------1.00-----
.......................................................................GGGAGCGGACGGGCGGTC.................................................................................................................................................................185.000.00----1.00---1.00-------1.00----1.00---------1.00----------------------
.......................................................................GGGAGCGGACGGGCGGT..................................................................................................................................................................174.000.00-2.00--1.00---------------------------------------1.00---------
......................................................................GGGGAGCGGACGGGCGGCG.................................................................................................................................................................194.000.001.00-----1.00----------1.00---------------1.00--------------------
.......................................................................GGGAGCGGACGGGCGGCGG................................................................................................................................................................193.000.00-------------------------1.00---------------1.00----1.00-------
.............................................................................................GCGGACCCGCTGGCACAGGCAGAC.....................................................................................................................................2413.003.003.00-----------------------------------------------------
.......................................................................GGGAGCGGACGGGCGGC..................................................................................................................................................................172.000.00-----------------------------1.00-------------1.00----------
.............................................................................GGACGGGCGAGGGCCTCCGT.........................................................................................................................................................202.000.00------------1.00------------------------1.00----------------
.......................................................................GGGAGCGGACGGGCGGCG.................................................................................................................................................................182.000.00---1.00------1.00-------------------------------------------
.............................................................................GGACGGGCGAGGGCCTCC...........................................................................................................................................................182.000.00---2.00--------------------------------------------------
......................................................................GGGGAGCGGACGGGCGG...................................................................................................................................................................172.000.00---------1.00-----------------------------------1.00--------
......................................................................GGGGAGCGGACGGGCGGCGG................................................................................................................................................................202.000.00----------------------1.00---------------1.00---------------
....................................................................................................................................................................................................................................GCCTGGGTGGTGAAGTGT....181.000.00------------------------------1.00-----------------------
.......................................................................GGGAGCGGACGGGCGGCAG................................................................................................................................................................191.000.00-----------1.00------------------------------------------
......................................................................GGGGAGCGGACGGGCGACG.................................................................................................................................................................191.000.00--1.00---------------------------------------------------
.............................................................................GGACGGGCGAGGGCCTCCGG.........................................................................................................................................................201.000.00--------1.00---------------------------------------------
........................................................................GGAGCGGACGGGCGAGGGTG..............................................................................................................................................................201.000.00------------------------1.00-----------------------------
...................................................................................................................................................................................................................CGTACCGGGAGCACAATG.....................181.000.00-----1.00------------------------------------------------
.......................................................................................GGGCCTGCGGACCCGGC..................................................................................................................................................171.000.00-----------------------1.00------------------------------
......................................................................GGGGAGCGGACGGGCGC...................................................................................................................................................................171.000.00-------------------------------------------------1.00----
.................................................................................................................................................................................................................................ACAGCCTGGGTGGTGTGTA......191.000.00-----------------------------------------------1.00------
.............................................................................GGACGGGCGAGGGCCTC............................................................................................................................................................171.000.00--1.00---------------------------------------------------
......................................................................GGGGAGCGGACGGGCGGCT.................................................................................................................................................................191.000.00--------------------------1.00---------------------------
.............................................................................GGACGGGCGAGGGCCTCCG..........................................................................................................................................................191.000.00--1.00---------------------------------------------------
.......................................................................GGGAGCGGACGGGCGGCC.................................................................................................................................................................181.000.00--------------------------------1.00---------------------
......................................................................GGGGAGCGGACGGGCGGAT.................................................................................................................................................................191.000.00-------------1.00----------------------------------------
.......................................................................GGGAGCGGACGGGCGTGA.................................................................................................................................................................181.000.00-1.00----------------------------------------------------
................................................................................................................................................................................................................TGACGTACCGGGAGCACACA......................2011.001.00----------------------------------------1.00-------------
......................................................................GGGGAGCGGACGGGC.....................................................................................................................................................................1520.500.50--------------------------------------------------0.50---
...................................................................CGTGGGGAGCGGACG........................................................................................................................................................................1540.250.25---------------------------------------------------0.25--

Antisense strand
CACAGGGGGTCTCTGCTGGAGCAGGTCACCTGGAGGGGGCTCTGACCCTGCGTGAGCACTAGCCCCTCGTGGGGAGCGGACGGGCGAGGGCCTGCGGACCCGCTGGCACAGGCAGACCTGGGCAGCTCCCGGTGAGAGCCCCGAAGGGTGGGGACGTCCTTCAGGGAAGCCCCACGCTGAGCGTGCCCCCTCCCCTACAGCCGCGTCATGACGTACCGGGAGCACACAGCCTGGGTGGTGAAGGCCTCCC
....................................................................(((((...((..(((((....)))))))..))))).....((((....))))..................................................................................................................................
.................................................................66.....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532874(GSM532874)
G699T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
..........................................................................................................................................................................................................................GGAGCACACAGCCTGACCT............. 191.000.00---------------------------1.00--------------------------
..............................................................................................CGGACCCGCTGGCACAGG.......................................................................................................................................... 181.000.00-------1.00----------------------------------------------
.................................................................................................................................CGGTGAGAGCCCCGAAC........................................................................................................ 171.000.00-------------------1.00----------------------------------
.................................................................................................................................CGGTGAGAGCCCCGACC........................................................................................................ 171.000.00-----------------------------------1.00------------------
.................................................................................................................................TTCGGGGCTCTCACCG......................................................................................................... 1611.001.00---------------1.00--------------------------------------
..........................................................................................................ACCGGGAGCTGCCCAGGTCTGCCTGTG..................................................................................................................... 2711.001.00--------------------1.00---------------------------------
.....................................................................................................................................GAGAGCCCCGAAGGGTGGT.................................................................................................. 191.000.00------------------------------------------1.00-----------
.............................CTGGAGGGGGCTCTGATG........................................................................................................................................................................................................... 181.000.00-----1.00------------------------------------------------
.....................................................................................GAGGGCCTGCGGACCCGG................................................................................................................................................... 181.000.00--------------1.00---------------------------------------
............................................................................................................................................................................................CCTCCCCTACAGCCGCAG............................................ 181.000.00----------------------------------1.00-------------------
.............................................................................................................................................................................................CTCCCCTACAGCCGCTTTT.......................................... 190.250.00-----------------------------------------------------0.25
.............................................................................................................................................................................................GCGGCTGTAGGGGAG.............................................. 1540.250.25----------------------------------------------------0.25-