ID: uc002jyg.1_intron_14_0_chr17_78298999_f.5p
GENE: RNF213(15)
chr17:78298949-78299198+


(1)
AGO2.ip 		(3)
B-CELL 		(3)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAAGCATCTGCTCACGTTGGCAGATGTCAAGCACGTCTTCAGATTGTGTGGTATGTTTGCGGGAGTGCTGGGAACATCAGCTCAGGCAAGGTGGTGTCTTCCTGATTGGGAAAGGTGGGAGGCAGAAGATTTGACATGATGATACTGAATTGGGATGGGCTGATGTTTGACAAAGGCTGCAGTTTGGACAGAGAGACCCTGGAAGGCTCAGAGTGTCTTGCGTTGTAAATAATAACTAATGCTAACAGCC
...................................................(((((((((..((((..((....))...))))..)))......((((((((...((....))...))))))))........))))))................................................................................................................
..................................................51.....................................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)
...................................................................................................................................TGACATGATGATACTGAAT....................................................................................................19136.0036.009.009.007.00-2.001.00---2.002.00-1.00-1.00------1.00-----1.00---
..................................................................................................................................TTGACATGATGATACTGAAT....................................................................................................20114.0014.003.00-5.00-----2.00--2.00------1.00---1.00--------
.................................CGTCTTCAGATTGTGTGG.......................................................................................................................................................................................................1814.004.00-4.00-----------------------------
...................................................................................................................................TGACATGATGATACTGATA....................................................................................................193.000.00---3.00---------------------------
..................................GTCTTCAGATTGTGTG........................................................................................................................................................................................................1613.003.00-----2.00-----------------1.00-------
......................................................GTTTGCGGGAGTGCTGGGAACATCT...........................................................................................................................................................................253.000.00----3.00--------------------------
.................................CGTCTTCAGATTGTGTG........................................................................................................................................................................................................1712.002.002.00------------------------------
......................................................................................................................GAGGCAGAAGATTTGACA..................................................................................................................1811.001.00-----------------------------1.00-
.......................................CAGATTGTGTGGTATTTT.................................................................................................................................................................................................181.000.00------------------------1.00------
...................................................................................AGGCAAGGTGGTGTCATAT....................................................................................................................................................191.000.00------1.00------------------------
........................................................................................................................................................................................TGGACAGAGAGACCCTGGAAGGC...........................................2311.001.00-------1.00-----------------------
.........GCTCACGTTGGCAGATGTCA.............................................................................................................................................................................................................................2011.001.00---------------1.00---------------
..................................................................................................................................TTGACATGATGATACTGATA....................................................................................................201.000.00---1.00---------------------------
...................................................................................................................................TGACATGATGATACTTATA....................................................................................................191.000.00---1.00---------------------------
..................................................................................................................................TTGACATGATGATACTGAATTGGGATGGGCTGATG.....................................................................................3511.001.00--1.00----------------------------
...........TCACGTTGGCAGATG................................................................................................................................................................................................................................1511.001.00-------------1.00-----------------
...........TCACGTTGGCAGATGTCAAG...........................................................................................................................................................................................................................2011.001.00--------------------------1.00----
..........CTCACGTTGGCAGATGT...............................................................................................................................................................................................................................1711.001.00----------------1.00--------------
...................................................................................................................................................AATTGGGATGGGCTGATGTTTGACAAAGGC.........................................................................3011.001.00-------------------------1.00-----
.......................ATGTCAAGCACGTCTTCA.................................................................................................................................................................................................................1811.001.00-------1.00-----------------------
...............................................................................................................................................ACTGAATTGGGATGGGCTGATG.....................................................................................2211.001.00------------1.00------------------
..........................................................................................................................................................................CAAAGGCTGCAGTTTGAAA.............................................................191.000.00-------------------1.00-----------
...................................................................................................................................................................................CAGTTTGGACAGAGAGACCC...................................................2011.001.00----------------------------1.00--
...................................................................................AGGCAAGGTGGTGTCGTAG....................................................................................................................................................191.000.00------1.00------------------------
........................TGTCAAGCACGTCTTCAGA...............................................................................................................................................................................................................1911.001.00------------------------------1.00
...................................................................................AGGCAAGGTGGTGTCGTAT....................................................................................................................................................191.000.00------1.00------------------------
...................................TCTTCAGATTGTGTG........................................................................................................................................................................................................1580.120.12-----0.12-------------------------

Antisense strand
AAAGCATCTGCTCACGTTGGCAGATGTCAAGCACGTCTTCAGATTGTGTGGTATGTTTGCGGGAGTGCTGGGAACATCAGCTCAGGCAAGGTGGTGTCTTCCTGATTGGGAAAGGTGGGAGGCAGAAGATTTGACATGATGATACTGAATTGGGATGGGCTGATGTTTGACAAAGGCTGCAGTTTGGACAGAGAGACCCTGGAAGGCTCAGAGTGTCTTGCGTTGTAAATAATAACTAATGCTAACAGCC
...................................................(((((((((..((((..((....))...))))..)))......((((((((...((....))...))))))))........))))))................................................................................................................
..................................................51.....................................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)
..........................................................................................................TGGGAAAGGTGGGAGGCA.............................................................................................................................. 181.000.00-----------------1.00-------------
...............................................................................GCTCAGGCAAGGTGGTG.......................................................................................................................................................... 171.000.00--------------------1.00----------