ID: uc002jxe.2_intron_2_0_chr17_77811702_r.3p
GENE: (2)
chr17:77811652-77811901-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(26)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(8)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCCCTTGCGTGTTTATTTGAGGGGGGGGCTGTGTATCAGGGACTACGTCAGGCCTGCGGAAATCTACCTTCCACATCCACGGCTAAATGTTCATAAAGACAGAGTAGGGCCTTATGTCACTCCCCACCTGGAGGCCGCGGCAAAGGTGGCTTTTTTTTTTTTTTTTACACCGTGTCCCCCTCCCTTTTCCCTTGCAAGATATAACACGTGGGAACCGGAGGAGAACATCCTGGACCCCAGGCTGCTGA
................................................................................................(((((.(((((...(((((.((((.((((......)))).....))))))))).))))).))))).........................................................................................
...............................................................................................96............................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTCTTT................................................................................253.000.003.00------------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTCT.................................................................................243.000.001.002.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................GAACCGGAGGAGAACATCCTGGACCCCAGG.......3013.003.00-------3.00-----------------------------------------------------------
............................................................................................................................................................................................................AACACGTGGGAACCGGAGGAGAA.......................2313.003.00---3.00---------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTC.................................................................................243.000.002.001.00-----------------------------------------------------------------
.............................................................................................................................................................................................................ACACGTGGGAACCGGAGGAG.........................2012.002.00--------------------1.00-----------------1.00----------------------------
..........................................................................................................................................................................................................................GGAGGAGAACATCCTGGACCCCAGGCT.....2712.002.00--2.00----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCTTT..............................................................................272.000.002.00------------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCTA...............................................................................262.000.001.001.00-----------------------------------------------------------------
....................................................................................................ACAGAGTAGGGCCTTATGT...................................................................................................................................1912.002.00----2.00--------------------------------------------------------------
.................................TGTATCAGGGACTACGTCAGGCC..................................................................................................................................................................................................2312.002.00-----2.00-------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTAAG...............................................................................262.000.00-2.00-----------------------------------------------------------------
.............................................................................................................................................................................................................ACACGTGGGAACCGGAGGAGAACA.....................2412.002.00------2.00------------------------------------------------------------
........................................................................................................................................................................................................ATATAACACGTGGGAACCGGAGGA..........................2412.002.00------------1.00------------------1.00-----------------------------------
.................................................................................................................................................................................................................GTGGGAACCGGAGGAGAACAT....................2112.002.00--2.00----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTAAG...................................................................................222.000.001.001.00-----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTCTTT...............................................................................262.000.001.001.00-----------------------------------------------------------------
...............................................................................................................................................................................................................ACGTGGGAACCGGAGGAGAACATCCTGGA..............2912.002.00-----2.00-------------------------------------------------------------
.............................................TACGTCAGGCCTGCGGA............................................................................................................................................................................................1712.002.00--------2.00----------------------------------------------------------
...............................................................................................TAAAGACAGAGTAGGGCC.........................................................................................................................................1812.002.00--2.00----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTCC..................................................................................231.000.00-1.00-----------------------------------------------------------------
.........................................................................................................................................CGCGGCAAAGGTGGCTTTT..............................................................................................1911.001.00-------------1.00-----------------------------------------------------
..............................................................................................................................CACCTGGAGGCCGCGGCAA.........................................................................................................1911.001.00--1.00----------------------------------------------------------------
.................................................................................................................................................................................................................GTGGGAACCGGAGGAGAACATC...................2211.001.00-----------------------------1.00-------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTACACCTAG..........................................................................241.000.00-----------------------1.00-------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACAGC.............................................................................251.000.00-1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................................ATCCTGGACCCCAGGCTGC...1911.001.00--------------------1.00----------------------------------------------
.........................................................................................................................................................................................................TATAACACGTGGGAACCG...............................1811.001.00---1.00---------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTCTT................................................................................251.000.001.00------------------------------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACTGG.............................................................................251.000.001.00------------------------------------------------------------------
.........................................................................................................................................CGCGGCAAAGGTGGCTTTA..............................................................................................191.000.00----------------1.00--------------------------------------------------
.....................................................................................................................................................................................................................................TCCTGGACCCCAGGCTGCTGA2111.001.00------------------------------1.00------------------------------------
......................................................................................................................................................................................TCCCTTTTCCCTTGCAAG..................................................1811.001.00---------------------------------1.00---------------------------------
......................................................................................................................................................................................................................AACCGGAGGAGAACATCATT................201.000.00------------------1.00------------------------------------------------
....................................................................................CTAAATGTTCATAAAGACAG..................................................................................................................................................2011.001.00-----------------------------------1.00-------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTATT.................................................................................241.000.00-1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................TATAACACGTGGGAACCGGAGGAGAA.......................2611.001.00---1.00---------------------------------------------------------------
..........................................................................................................................................................................................................ATAACACGTGGGAACCGGAGGAGA........................2411.001.00--1.00----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCC................................................................................251.000.001.00------------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTCCTT...............................................................................261.000.001.00------------------------------------------------------------------
..................................................................................................................................................GGTGGCTTTTTTTTTTTTTTTAAG................................................................................241.000.00-1.00-----------------------------------------------------------------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCC............................................................................231.000.00---------1.00---------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTGTTT..............................................................................271.000.001.00------------------------------------------------------------------
......................................................................................................................................................................................................................................CCTGGACCCCAGGCTGCTGA2011.001.00--------1.00----------------------------------------------------------
..............................................................................................................................................................................................................CACGTGGGAACCGGAGG...........................1711.001.00-----------------1.00-------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCCC...............................................................................261.000.00-1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................TGGGAACCGGAGGAGAACA.....................1911.001.00----------------------1.00--------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTGTT.................................................................................241.000.001.00------------------------------------------------------------------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCCTTG.........................................................................261.000.00------------------------1.00------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTCCC................................................................................251.000.00-1.00-----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTGTTT...............................................................................261.000.001.00------------------------------------------------------------------
..................................................................................................AGACAGAGTAGGGCCTTATGT...................................................................................................................................2111.001.00------------------------------------------------------------1.00------
........................................................................................................................................................................................................ATATAACACGTGGGAACCGGAGG...........................2311.001.00------------1.00------------------------------------------------------
...........................................................................................................................................................................................................TAACACGTGGGAACCGGAGGAGAAC......................2511.001.00----------------------------------------------------1.00--------------
..........................................................................................................................................................................................................ATAACACGTGGGAACCGGA.............................1911.001.00-------------------1.00-----------------------------------------------
..................................................................................................................................................................................................................TGGGAACCGGAGGAGAACATCC..................2211.001.00---------------------------------------1.00---------------------------
.........................................................................................................................................................................................................TATAACACGTGGGAACCGGAGGAGAAC......................2711.001.00-----1.00-------------------------------------------------------------
................................................................................................................................................AAGGTGGCTTTTTTTTTTTTTCC...................................................................................231.000.001.00------------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTCC....................................................................................211.000.001.00------------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTCAAG...................................................................................221.000.00-1.00-----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCCTT..............................................................................271.000.001.00------------------------------------------------------------------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCAG...........................................................................241.000.00------------------------------------------------------1.00------------
.....................................................................................................................................................GGCTTTTTTTTTTTTTTTTACCTT.............................................................................241.000.00-1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................................AGAACATCCTGGACCCCAGGCTGCA..251.000.00------------------------------------------------1.00------------------
..................................................................................................................................................GGTGGCTTTTTTTTTTTTTTTTAAAG..............................................................................261.000.00-1.00-----------------------------------------------------------------
.......................................................................................................................................................................................................................ACCGGAGGAGAACATCCTGGACCCCAGGC......2911.001.00------1.00------------------------------------------------------------
...........................................ACTACGTCAGGCCTGCGGA............................................................................................................................................................................................1911.001.00-------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................ATAACACGTGGGAACCGGAG............................2011.001.00-------------------1.00-----------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACAG..............................................................................241.000.00-1.00-----------------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTGGAC.................................................................................241.000.001.00------------------------------------------------------------------
.......................................................................................................................................................................................................................ACCGGAGGAGAACATC...................1611.001.00---------------------------------------------------1.00---------------
.........................................................................................................................................................................................................TATAACACGTGGGAACCGGAGGA..........................2311.001.00---1.00---------------------------------------------------------------
......................................................................................................................................................................................................................AACCGGAGGAGAACACAAA.................191.000.00------------------1.00------------------------------------------------
.................................................................................................................................................................................................................GTGGGAACCGGAGGAGAAC......................1911.001.00--------1.00----------------------------------------------------------
....................GAGGGGGGGGCTGTGATTT...................................................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00-------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCGG...........................................................................2411.001.001.00------------------------------------------------------------------
...................TGAGGGGGGGGCTGTATAG....................................................................................................................................................................................................................191.000.00----------1.00--------------------------------------------------------
........................................GGGACTACGTCAGGCTGTT...............................................................................................................................................................................................191.000.00-------------------------------------1.00-----------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACTACC............................................................................261.000.00-1.00-----------------------------------------------------------------
.....................................................................................................................................................................................CTCCCTTTTCCCTTGCAAG..................................................1911.001.00----------------------------------------------------------1.00--------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCTC...............................................................................261.000.00-1.00-----------------------------------------------------------------
.....................................TCAGGGACTACGTCAGGCCTGCGGAAAT.........................................................................................................................................................................................2811.001.00---1.00---------------------------------------------------------------
.............................................................................................................................................................................................................ACACGTGGGAACCGGAGGAGAA.......................2211.001.00----------------------1.00--------------------------------------------
.............................................................................................................................................................................................................ACACGTGGGAACCGGAGGA..........................1911.001.00-----------------1.00-------------------------------------------------
.................................................................................................AAGACAGAGTAGGGCCTTATG....................................................................................................................................2111.001.00-------------1.00-----------------------------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTACACCCTG..........................................................................211.000.00-1.00-----------------------------------------------------------------
............GTTTATTTGAGGGGGGGGC...........................................................................................................................................................................................................................1911.001.00--------------------------------------------1.00----------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTCGAG...................................................................................221.000.001.00------------------------------------------------------------------
.........................................................................................................................................CGCGGCAAAGGTGGCTTTTTTTT..........................................................................................2311.001.00---------------------------------------------1.00---------------------
..................................GTATCAGGGACTACGTCAGGCCTGCGG.............................................................................................................................................................................................2711.001.00--------------------------------1.00----------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTACACTCG...........................................................................231.000.00---------1.00---------------------------------------------------------
....................................................................................................ACAGAGTAGGGCCTTATG....................................................................................................................................1811.001.00--------------------------------------------------1.00----------------
..........................................................................ACATCCACGGCTAAATGTTCATAAA.......................................................................................................................................................2511.001.00----------------------------1.00--------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTCTT.................................................................................241.000.001.00------------------------------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTATTTC.............................................................................251.000.001.00------------------------------------------------------------------
.........................................................................................................................................................................................................TATAACACGTGGGAACCGGAGGAG.........................2411.001.00---------------------1.00---------------------------------------------
...................................................................................................................................................GTGGCTTTTTTTTTTTTTTTTCGAG..............................................................................251.000.00-1.00-----------------------------------------------------------------
...........................................................................................................................................................................CCGTGTCCCCCTCCCTTTTCCCTTGCAAG..................................................2911.001.00--------------------------------------------------------1.00----------
.........................................................................................................................................................................................................TATAACACGTGGGAACCGGAGGT..........................231.000.00---------------------1.00---------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACTAC.............................................................................251.000.00-1.00-----------------------------------------------------------------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCG............................................................................2311.001.00---------1.00---------------------------------------------------------
.................................................................................................AAGACAGAGTAGGGCCTTA......................................................................................................................................1911.001.00-----------1.00-------------------------------------------------------
..................................................................................................................................................................................CCCCTCCCTTTTCCCGCC......................................................181.000.00------------------------------------1.00------------------------------
.......................................................................................................................................................CTTTTTTTTTTTTTTTTACACCCAG..........................................................................251.000.00------------------------1.00------------------------------------------
...............................................................................................................................................................................................................ACGTGGGAACCGGAGGAGAAC......................2111.001.00-----------------------------------------1.00-------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCG................................................................................251.000.00-----------------------1.00-------------------------------------------
...........................................................................................................................................................................................................................GAGGAGAACATCCTGGGG.............181.000.00-------------------------------------------------1.00-----------------
................ATTTGAGGGGGGGGCG..........................................................................................................................................................................................................................161.000.00------------1.00------------------------------------------------------
.................................................................................................................................................AGGTGGCTTTTTTTTTTTTTTTTCT................................................................................251.000.001.00------------------------------------------------------------------
....................................................................................................................................................TGGCTTTTTTTTTTTTTTTTACTGCT............................................................................261.000.00-1.00-----------------------------------------------------------------
.................................................................................................................................................................................CCCCCTCCCTTTTCCCTTGCA....................................................2111.001.00----------------------------------------1.00--------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTACACCG............................................................................2220.500.50---------0.50---------------------------------------------------------
................................................................................................AAAGACAGAGTAGGGCCTT.......................................................................................................................................1920.500.50-------------------------0.50-----------------------------------------
..........................................................................................................................................................................................................................GGAGGAGAACATCCTGGACC............2020.500.50-------------------------------------------------------------0.50-----
.................................................................................................AAGACAGAGTAGGGCCTT.......................................................................................................................................1820.500.50---------------------------------------------------------------0.50---
..............................................................................................................................................................................................................................GAGAACATCCTGGACC............1630.330.33----------------------------------------------------------------0.33--
.......................................................................................................................................................................................................................................CTGGACCCCAGGCTGCT..1730.330.33-----------------------------------------------------------------0.33-
...............................................................................................................................................AAAGGTGGCTTTTTTTTT.........................................................................................1870.140.14------------------------------------------------------------------0.14

Antisense strand
CTGCCCTTGCGTGTTTATTTGAGGGGGGGGCTGTGTATCAGGGACTACGTCAGGCCTGCGGAAATCTACCTTCCACATCCACGGCTAAATGTTCATAAAGACAGAGTAGGGCCTTATGTCACTCCCCACCTGGAGGCCGCGGCAAAGGTGGCTTTTTTTTTTTTTTTTACACCGTGTCCCCCTCCCTTTTCCCTTGCAAGATATAACACGTGGGAACCGGAGGAGAACATCCTGGACCCCAGGCTGCTGA
................................................................................................(((((.(((((...(((((.((((.((((......)))).....))))))))).))))).))))).........................................................................................
...............................................................................................96............................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
.................................................................GTGGATGTGGAAGGTAG........................................................................................................................................................................ 1722.502.50--------------2.50----------------------------------------------------
..................................................................GCCGTGGATGTGGAAGGTA..................................................................................................................................................................... 1912.002.00----2.00--------------------------------------------------------------
.............................................................................................................................................GCAAAGGTGGCTTTTATTG.......................................................................................... 192.000.00----------2.00--------------------------------------------------------
.............................................................................................................................................................................GTGTCCCCCTCCCTTTCAT.......................................................... 191.000.00---------------------------------------------------------1.00---------
..................................................................AGCCGTGGATGTGGAAGGTA.................................................................................................................................................................... 2011.001.00----1.00--------------------------------------------------------------
.........................................................................................................GAGTGACATAAGGCCCTAC.............................................................................................................................. 1911.001.00-------------------------1.00-----------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTACACTGT........................................................................... 231.000.00-----------------------------------------------------1.00-------------
...................TGAGGGGGGGGCTGTCTC..................................................................................................................................................................................................................... 181.000.001.00------------------------------------------------------------------
...................................................................GCCGTGGATGTGGAAGGT..................................................................................................................................................................... 1811.001.00---------------------------1.00---------------------------------------
..........................................................................................................................................................................ACCGTGTCCCCCTCCCTGTT............................................................ 201.000.00------------------------------------------1.00------------------------
....................................................................CCTTCCACATCCACGGCTAAATGTTG............................................................................................................................................................ 261.000.00------1.00------------------------------------------------------------
....................................................................CCTTCCACATCCACGGCGAGA................................................................................................................................................................. 211.000.00---------------1.00---------------------------------------------------
.............................................................GTGGATGTGGAAGGTAGATTT........................................................................................................................................................................ 2111.001.00-------------1.00-----------------------------------------------------
...................................................................ACCTTCCACATCCACGGCTGG.................................................................................................................................................................. 211.000.00-----------1.00-------------------------------------------------------
.................................................................GCCGTGGATGTGGAAGGTAG..................................................................................................................................................................... 2011.001.00---------------1.00---------------------------------------------------
....................................................................TAGCCGTGGATGTGGAAGG................................................................................................................................................................... 1911.001.00------1.00------------------------------------------------------------
...........................................ACTACGTCAGGCCTGCGGAA........................................................................................................................................................................................... 2011.000.00----------------1.00--------------------------------------------------
...................................TATCAGGGACTACGTCAGGGCT................................................................................................................................................................................................. 221.000.00-----------------------------------------------1.00-------------------
...............................................................................................................................................................................GTCCCCCTCCCTTTTCCGG........................................................ 191.000.00-------------------------------------------------------1.00-----------
............................................................................................................................................................TTTTTTTTTTTTACACCCAAA......................................................................... 211.000.00----------------------------------1.00--------------------------------
........................................................................................................................ACTCCCCACCTGGAGTTGA............................................................................................................... 191.000.00--------------------------1.00----------------------------------------
..............................................................................................................................................................................TGTCCCCCTCCCTTTTAT.......................................................... 181.000.00----------------------------------------------1.00--------------------
....................................................................CCTTCCACATCCACGGCTAAATGTGA............................................................................................................................................................ 261.000.00-----------1.00-------------------------------------------------------
................................................................TCTACCTTCCACATCCACGGCAA................................................................................................................................................................... 231.000.00----1.00--------------------------------------------------------------
..............................................................AATCTACCTTCCACAGCC.......................................................................................................................................................................... 181.000.00-------------------------------------------1.00-----------------------
..........................................................................................................................................................CGGTGTAAAAAAAAAAAAAA............................................................................ 2020.500.50--------------------------------------------------------------0.50----