ID: uc002juy.3_intron_0_0_chr17_76183515_f.5p
GENE: AFMID(1)
chr17:76183465-76183714+


(1)
AGO1.ip 		(1)
AGO2.ip 		(8)
B-CELL 		(3)
BRAIN 		(19)
BREAST 		(36)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(5)
HELA 		(10)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(32)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CTGGTGTGGGTTTCCCAAGCAAGGTTCCTTGGAAGAAGATGTCTGCAGAGGTAGGTGGATTGCAGGGAGGGACTAAGGGGCTGGGGCGGAGTTAGCTCATTTATTAGATTGGAATTCCAAGAAGGAAGCTTAGAAGCCGTCTAGAGCACTCCTGTGGGCATGCAGAGCGCCTAGTGCGTGCCAGGTCCCCAGTGCTTGAGCACCATGGTGTATTTTACCTTCTCCTAAGGATTTTTGTTAACCTGGTTTT
...............................................................................(((...(((((((..((((..........((((....))))..(((..(((....)))..))).))))))))).)).)))...........................................................................................
.............................................................................78.................................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................GGGGCGGAGTTAGCTCAAGC....................................................................................................................................................2012.000.00-----3.00-2.00-----------------1.001.00---1.00---1.00-----------1.00----------------------------1.00---------------1.00---------------------------------
......................................................................................................................................AGCCGTCTAGAGCACTCCTGTGG.............................................................................................2318.008.00---------4.004.00------------------------------------------------------------------------------------------------------------------
.....................AGGTTCCTTGGAAGAAGATG.................................................................................................................................................................................................................2016.006.005.00------------------------------1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................CACTCCTGTGGGCATGCAGAGC..................................................................................2215.005.004.00------------------------------------------------------------------------1.00---------------------------------------------------
..................................................................................................................................................CACTCCTGTGGGCATGCAGAG...................................................................................2114.004.001.001.00--------------------------------------------------------------1.00---------------1.00--------------------------------------------
.....................AGGTTCCTTGGAAGAAGA...................................................................................................................................................................................................................1814.004.00---------------------------2.00--------2.00----------------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCAGAGCG.................................................................................2114.004.003.001.00---------------------------------------------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCAAG.....................................................................................................................................................194.000.00-----1.00-2.00--------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................CTAGAGCACTCCTGTGGGCAT.........................................................................................2114.004.00-4.00---------------------------------------------------------------------------------------------------------------------------
..............................................................CAGGGAGGGACTAAGGGGCTGGG.....................................................................................................................................................................2314.004.001.00-----------------------------------------2.00----------------------------1.00-----------------------------------------------------
.....................................................................................................................................................TCCTGTGGGCATGCAGAGCG.................................................................................2014.004.001.00-------------1.00----1.00---1.00-----------------------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCAAGCG...................................................................................................................................................214.000.00----1.001.00-----------------------1.001.00----------------------------------------------------------------------------------------------
.........................TCCTTGGAAGAAGATGTCTG.............................................................................................................................................................................................................2014.004.00------------1.00---------------------------1.00------------------------1.00---------------1.00-------------------------------------------
......................................ATGTCTGCAGAGGTAGGTG.................................................................................................................................................................................................1914.004.003.00--------------------------------------------------------------------------------------------------------------------1.00-------
.....................................................................................................................................................TCCTGTGGGCATGCAGAG...................................................................................1813.003.001.00-------------1.00--------------------------------------------------------------------------------------------------1.00-----------
....................................................AGGTGGATTGCAGGGAGG....................................................................................................................................................................................1813.003.003.00----------------------------------------------------------------------------------------------------------------------------
...........................CTTGGAAGAAGATGTCTG.............................................................................................................................................................................................................1813.003.001.00------------1.00------1.00--------------------------------------------------------------------------------------------------------
.............................TGGAAGAAGATGTCTGCAGAGGAGC....................................................................................................................................................................................................253.000.00---3.00-------------------------------------------------------------------------------------------------------------------------
..................GCAAGGTTCCTTGGAAGA......................................................................................................................................................................................................................1813.003.00--3.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCAGAG...................................................................................2013.003.00-2.00---------------------------------------1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................TCCTGTGGGCATGCAGAGC..................................................................................1913.003.00---------------------------------2.00----------------------------------------1.00--------------------------------------------------
...............................................................................................................................................................ATGCAGAGCGCCTAGTGCG........................................................................1913.003.00--1.00-------------------------1.00---1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................GCCGTCTAGAGCACTCCTGTGGGC...........................................................................................2413.003.00-2.00----1.00----------------------------------------------------------------------------------------------------------------------
...................................AAGATGTCTGCAGAGGAG.....................................................................................................................................................................................................183.000.00---------------1.00--2.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................AGAAGCCGTCTAGAGCA......................................................................................................1713.003.00------------------------2.00-----------------------------------------------------------------------------------1.00----------------
............................TTGGAAGAAGATGTCTGCAGAGGA......................................................................................................................................................................................................242.000.00---2.00-------------------------------------------------------------------------------------------------------------------------
..................................................GTAGGTGGATTGCAGGGAGGG...................................................................................................................................................................................2112.002.00-----------2.00-----------------------------------------------------------------------------------------------------------------
........................................................................................................................................CCGTCTAGAGCACTCCTGTGGGCATGCAGAG...................................................................................3112.002.00----2.00------------------------------------------------------------------------------------------------------------------------
.................AGCAAGGTTCCTTGGAAGAAGATGTCTGCAGAGGTA.....................................................................................................................................................................................................3612.002.00------------------------------------------------------------1.00-----------------------------------------------------------1.00----
......................................................................................................................................................CCTGTGGGCATGCAGAGCG.................................................................................1912.002.00--------------1.00----------------------------1.00---------------------------------------------------------------------------------
.......................GTTCCTTGGAAGAAGATG.................................................................................................................................................................................................................1812.002.00--2.00--------------------------------------------------------------------------------------------------------------------------
...............................................................................GCTGGGGCGGAGTTAGCT.........................................................................................................................................................1812.002.00----------------------------1.00---1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................ATGCAGAGCGCCTAGTGCGTG......................................................................2112.002.00--2.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................AGCCGTCTAGAGCACTCCTGTGGGCA..........................................................................................2612.002.00--2.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................AGGGGCTGGGGCGGAGTTAG...........................................................................................................................................................2012.002.002.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GTCTAGAGCACTCCTGTGGG............................................................................................2012.002.00---------------------------------------------------1.00-------1.00-----------------------------------------------------------------
.................................................................................TGGGGCGGAGTTAGCTCAAGCG...................................................................................................................................................222.000.00--------1.00----------------------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................CACTCCTGTGGGCATGCAGAGCG.................................................................................2312.002.00-----------------------------------1.00---------------------------------------------------------------------1.00-------------------
...................................................................................................................................AGAAGCCGTCTAGAGCACTCCT.................................................................................................2212.002.00------1.00--------------------------------------1.00-------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCAGAGCGCCTA.............................................................................2512.002.00-----------------------------------------------1.00-------------------------------------------------1.00---------------------------
....................AAGGTTCCTTGGAAGAAGATGTCT..............................................................................................................................................................................................................2412.002.00---------------1.00-----1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................................................GTGGGCATGCAGAGCGCCTA.............................................................................2012.002.00---------------------------------------2.00-------------------------------------------------------------------------------------
.................................................................................TGGGGCGGAGTTAGCTCAAG.....................................................................................................................................................202.000.00--------2.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCAGAG...................................................................................1912.002.001.00-------------------------------------------------------------------------------------------------------------------1.00--------
................................................................................................................................................AGCACTCCTGTGGGCATGCAGAGC..................................................................................2412.002.00------------------------------------------------------------------------------------------------1.00------------1.00---------------
............................TTGGAAGAAGATGTCTGCAGAGGAGC....................................................................................................................................................................................................262.000.00---1.00----------------------------------1.00--------------------------------------------------------------------------------------
............................TTGGAAGAAGATGTCTGCA...........................................................................................................................................................................................................1912.002.00-------------------------------1.00-----------1.00---------------------------------------------------------------------------------
........................................................................................................................................CCGTCTAGAGCACTCCTGTGGGC...........................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------------1.00---------
...........................................................................AGGGGCTGGGGCGGAGTT.............................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------------1.00---------------------
.................................................................................TGGGGCGGAGTTAGCTCACGC....................................................................................................................................................211.000.00----1.00------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GTCTAGAGCACTCCTGTGGGCATGCAGAGC..................................................................................3011.001.00--------------------------------------------------------1.00--------------------------------------------------------------------
.....GTGGGTTTCCCAAGCAAGGTT................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00----------------------------------------------------
.......................................................................................................................................GCCGTCTAGAGCACTCCTGTTGGC...........................................................................................241.000.00-1.00---------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GTCTAGAGCACTCCTGTGGGCATG........................................................................................2411.001.00-------------------------------------1.00---------------------------------------------------------------------------------------
...........................CTTGGAAGAAGATGTCTGCAGAG........................................................................................................................................................................................................2311.001.00--------------------------------------------1.00--------------------------------------------------------------------------------
..................................GAAGATGTCTGCAGAGGA......................................................................................................................................................................................................181.000.00---------------------------------------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................GGTCCCCAGTGCTTGAGA.................................................181.000.00----------------------------------------------------1.00------------------------------------------------------------------------
..................................................................................................................................................CACTCCTGTGGGCATGCAGA....................................................................................2011.001.001.00----------------------------------------------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCAAGCT...................................................................................................................................................211.000.00--------------------------------------------------------------------------------------1.00--------------------------------------
.............................................................GCAGGGAGGGACTAAGGGG..........................................................................................................................................................................1911.001.00-------------1.00---------------------------------------------------------------------------------------------------------------
......................................ATGTCTGCAGAGGTAGGAT.................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------1.00-----------------------------------------
..................................................................................................................................TAGAAGCCGTCTAGAGCACT....................................................................................................2011.001.00-----------------------------------------------------------------------------------------1.00-----------------------------------
........................TTCCTTGGAAGAAGATGTCTGC............................................................................................................................................................................................................2211.001.00------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCAG.....................................................................................1811.001.00--------------------------------------------------------------------1.00--------------------------------------------------------
............................................GCAGAGGTAGGTGGATTGCAGG........................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------1.00-----------------------
.......................................................................................................................................................CTGTGGGCATGCAGAGCG.................................................................................1811.001.00----------------------------------------------------------------------1.00------------------------------------------------------
..............................................AGAGGTAGGTGGATTTTA..........................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------------------------1.00------
...............................................................................................................................................................................................................................CCTAAGGATTTTTGTTAA.........1811.001.00---------------------------------------------------------------1.00-------------------------------------------------------------
...................................................................AGGGACTAAGGGGCTGGGGC...................................................................................................................................................................2011.001.00------1.00----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCCTGTGGGCATGCAGAGCGCCTAG............................................................................2511.001.001.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCATGAC..................................................................................201.000.00--------------------------------------1.00--------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCAAGAA...................................................................................................................................................211.000.00---------------------------------------------------------------------------------------1.00-------------------------------------
...........................................................................................................................................TCTAGAGCACTCCTGTGGG............................................................................................1911.001.00--1.00--------------------------------------------------------------------------------------------------------------------------
............................TTGGAAGAAGATGTCTGCAGAG........................................................................................................................................................................................................2211.001.00---------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................CTAGAGCACTCCTGTGGGCATGCA......................................................................................2411.001.00-------------------------------------------------------------1.00---------------------------------------------------------------
...........................CTTGGAAGAAGATGTCTGCAGAGGTAG....................................................................................................................................................................................................2711.001.00--------------------------------------------1.00--------------------------------------------------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCCGCG...................................................................................201.000.00-1.00---------------------------------------------------------------------------------------------------------------------------
............................................................TGCAGGGAGGGACTAGGGA...........................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------1.00------------------------------------
.....................................................................................................................................................TCCTGTGGGCATGCAGAGCGCC...............................................................................2211.001.00-----------------------------------------------------------------------------------------------------------------------1.00-----
...................................................................................GGGCGGAGTTAGCTCATGCG...................................................................................................................................................201.000.00----------------------------------------------------------------------------------------------1.00------------------------------
..................................................................................GGGGCGGAGTTAGCTC........................................................................................................................................................1611.001.00------------------------------------------------1.00----------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCAGG.....................................................................................................................................................191.000.00----------------------1.00------------------------------------------------------------------------------------------------------
........................TTCCTTGGAAGAAGATGTCTG.............................................................................................................................................................................................................2111.001.00----------------------------------------------------------------------------------1.00------------------------------------------
.................AGCAAGGTTCCTTGGAAGAAGATGTCTG.............................................................................................................................................................................................................2811.001.00----------------------------------------------------------------------------------------------------1.00------------------------
.......................GTTCCTTGGAAGAAGATGTCT..............................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------1.00--------------------------
................................................................................................TCATTTATTAGATTGGTTTC......................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------------------------------1.00--
.................................................................................................................................................................................................................GTATTTTACCTTCTCCTAAGGATTT................2511.001.00----------------------------------------------------------------------------1.00------------------------------------------------
..............................................................CAGGGAGGGACTAAGGGGCTGG......................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------------------------------1.00------------
..................................................................................GGGGCGGAGTTAGCTCAA......................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------1.00-------------------------
...........................................TGCAGAGGTAGGTGGATTGTTT.........................................................................................................................................................................................221.000.00-------------------1.00---------------------------------------------------------------------------------------------------------
...........TTCCCAAGCAAGGTTCCTTG...........................................................................................................................................................................................................................2011.001.00-----------------1.00-----------------------------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCTCATGCGT..................................................................................................................................................221.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------
..................................................................................GGGGCGGAGTTAGCT.........................................................................................................................................................1511.001.00-------------------------1.00---------------------------------------------------------------------------------------------------
......................................ATGTCTGCAGAGGTAGGATC................................................................................................................................................................................................201.000.00---------------------------------------------------------------------1.00-------------------------------------------------------
................................................AGGTAGGTGGATTGCAGGG.......................................................................................................................................................................................1911.001.00-----------------------1.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................CCGTCTAGAGCACTC...................................................................................................1521.001.00-------------------------------------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCAGAGCG.................................................................................2211.001.00-------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................TCCTGTGGGCATGCAGATCGC................................................................................211.000.00-1.00---------------------------------------------------------------------------------------------------------------------------
..................................GAAGATGTCTGCAGAGAC......................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................ACTCCTGTGGGCATGCAGAGCGCCTAGTGCG........................................................................3111.001.00-----------------------------------------------------------------------------1.00-----------------------------------------------
................................................................................................................................................AGCACTCCTGTGGGCATGCAGAGCGCCTAGTG..........................................................................3211.001.00----------------------------------1.00------------------------------------------------------------------------------------------
................................................................................................................................................AGCACTCCTGTGGGCATGCA......................................................................................2011.001.00--------------------------------------------------------------------------------------------------------1.00--------------------
.........................TCCTTGGAAGAAGATGTCC..............................................................................................................................................................................................................1911.001.00------1.00----------------------------------------------------------------------------------------------------------------------
.TGGTGTGGGTTTCCCAAG.......................................................................................................................................................................................................................................1811.001.00----1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................CACTCCTGTGGGCATGCAGAGCGCCT..............................................................................2611.001.00--------------------------------------------------------------1.00--------------------------------------------------------------
..................................................................GAGGGACTAAGGGGCTGGGG....................................................................................................................................................................2011.001.00-------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCAGAGCA.................................................................................221.000.00------------------------------------------------------------------------------------------------------1.00----------------------
..........................CCTTGGAAGAAGATGTCTGCAGA.........................................................................................................................................................................................................2311.001.00-----------------1.00-----------------------------------------------------------------------------------------------------------
.........................TCCTTGGAAGAAGATGTCTGCA...........................................................................................................................................................................................................2211.001.00--------------------1.00--------------------------------------------------------------------------------------------------------
.......................GTTCCTTGGAAGAAGATGTCTGC............................................................................................................................................................................................................2311.001.00------------------------------------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................CCTGTGGGCATGCAGAGC..................................................................................1811.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................GAGCACTCCTGTGGGCATGCAGAG...................................................................................2411.001.00-1.00---------------------------------------------------------------------------------------------------------------------------
..................................................................GAGGGACTAAGGGGCTGG......................................................................................................................................................................1811.001.00--------------------------1.00--------------------------------------------------------------------------------------------------
.......................GTTCCTTGGAAGAAGATGT................................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------1.00------------------
..................................................GTAGGTGGATTGCAGGGAAA....................................................................................................................................................................................201.000.00----------------------------------------------------------1.00------------------------------------------------------------------
.......................................................................................................................................GCCGTCTAGAGCACTCCTGTG..............................................................................................2111.001.00------------1.00----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................GAGCACTCCTGTGGGCATGCA......................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------1.00---
......................................................................GACTAAGGGGCTGGGGAGGA................................................................................................................................................................201.000.00------------------------------------------------------------------------------------1.00----------------------------------------
..................................................GTAGGTGGATTGCAGGGAGGGA..................................................................................................................................................................................2211.001.00------------------------------------------------------1.00----------------------------------------------------------------------
................................................AGGTAGGTGGATTGCAGG........................................................................................................................................................................................1811.001.00-----------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCAGA....................................................................................1811.001.00--------------------------------------------------1.00--------------------------------------------------------------------------
.TGGTGTGGGTTTCCCAAGC......................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------------------1.00--------------
.............................TGGAAGAAGATGTCTGCAGAG........................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00--------------------------------
.............................TGGAAGAAGATGTCTGCA...........................................................................................................................................................................................................1811.001.00---------------1.00-------------------------------------------------------------------------------------------------------------
..............................GGAAGAAGATGTCTGCAGAG........................................................................................................................................................................................................2021.001.00-----------------------------------------------------------------------------------------------------------1.00-----------------
............................TTGGAAGAAGATGTCTGCAGA.........................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------------1.00----------
.........................TCCTTGGAAGAAGATGTC...............................................................................................................................................................................................................1811.001.00----------------------------------------1.00------------------------------------------------------------------------------------
...........................................TGCAGAGGTAGGTGGATTGTAT.........................................................................................................................................................................................221.000.00-------------------------------------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CTCCTAAGGATTTTTGTTAACCTGG....2511.001.00----------------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................AGAAGCCGTCTAGAGCACTCCTGTGG.............................................................................................2611.001.00-------------------------------------------------------------------1.00---------------------------------------------------------
......................................................................................................................................AGCCGTCTAGAGCACTCCT.................................................................................................1911.001.00---------------------------------------------------------1.00-------------------------------------------------------------------
......................GGTTCCTTGGAAGAAGATGTCTGC............................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------------------1.00-------------------------------
...................................................................................................................................AGAAGCCGTCTAGAGCACTCCTGTGGGC...........................................................................................2811.001.00------------------------------------------------------------------------------1.00----------------------------------------------
......................................................GTGGATTGCAGGGAGGGACTAA..............................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................ACTCCTGTGGGCATGCAGAGCGCC...............................................................................2411.001.00----------------1.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................AGAGCACTCCTGTGGGCATGCA......................................................................................2211.001.00-----------------------------------------------------------------------------------------------1.00-----------------------------
.............................................CAGAGGTAGGTGGATTGCA..........................................................................................................................................................................................1911.001.00-----------------------------------------1.00-----------------------------------------------------------------------------------
..........................................CTGCAGAGGTAGGTGGAT..............................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------------------------------------------------------0.50-
...................................................................AGGGACTAAGGGGCTGG......................................................................................................................................................................1720.500.50-----------------------------------------------0.50-----------------------------------------------------------------------------
...........................................................................AGGGGCTGGGGCGGAGT..............................................................................................................................................................1740.500.500.50----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTCCTGTGGGCATGCAG.....................................................................................1720.500.50----------------------------------------------0.50------------------------------------------------------------------------------
.............................TGGAAGAAGATGTCTG.............................................................................................................................................................................................................1640.250.25----------------------------------------------------------------------------------------------------------------------------0.25
.....................AGGTTCCTTGGAAGAA.....................................................................................................................................................................................................................1650.200.20------------------------------------------------0.20----------------------------------------------------------------------------

Antisense strand
CTGGTGTGGGTTTCCCAAGCAAGGTTCCTTGGAAGAAGATGTCTGCAGAGGTAGGTGGATTGCAGGGAGGGACTAAGGGGCTGGGGCGGAGTTAGCTCATTTATTAGATTGGAATTCCAAGAAGGAAGCTTAGAAGCCGTCTAGAGCACTCCTGTGGGCATGCAGAGCGCCTAGTGCGTGCCAGGTCCCCAGTGCTTGAGCACCATGGTGTATTTTACCTTCTCCTAAGGATTTTTGTTAACCTGGTTTT
...............................................................................(((...(((((((..((((..........((((....))))..(((..(((....)))..))).))))))))).)).)))...........................................................................................
.............................................................................78.................................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)		SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................AGAAGCCGTCTAGAGCAG..................................................................................................... 1811.000.00------------------------------------------------------------------1.00----------------------------------------------------------
.........................................................................................AGTTAGCTCATTTATTTGTG............................................................................................................................................. 201.000.00--------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TTTTACCTTCTCCTAATTG................... 191.000.00-----------------------------------------------------1.00-----------------------------------------------------------------------