ID: uc002jui.1_intron_5_0_chr17_76115128_r
GENE: TMC6(4)
chr17:76115078-76115427-


(2)
AGO2.ip
(1)
AGO3.ip
(10)
B-CELL
(1)
BRAIN
(5)
BREAST
(20)
CELL-LINE
(4)
CERVIX
(3)
HEART
(1)
KIDNEY
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(21)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GACATTGCCCGGAATGTCCTGGAGCTGATTTATGGGCAGACTCTGACCTGGTGAGGGTCCTCTGCTTGCCTCCTACTGTCTGGCCCCTCGGTCAGTGCCCCTTTCCCCCCGGGGGTCCTGTACCTGCCTCCCCCTGGGGCCACAGCCAGGCCCGGCCATGGACCCTGGAGTGATGCAGACCCTAACCCCGGGGACTCAGTTTTGGCCACTGTCACATGCCCTGCCCGTGGTCTGGAACCAGCCTGATCTCGGGGAGGGGAGGGCACTGGAGCAGCCCCTGAACTGCCACCCCCTCCCCAGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCAGATCATCAAGC
..........................................................................................................................................................................................................................................................(((((((((..((((..((.......)).....))))..)))))))))....................................................
....................................................................................................................................................................................................................................................245....................................................300................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040036(GSM532921)
G243N. (cervix)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGGAG...............................................................................22142.0042.009.008.00-1.00-2.002.001.00-1.001.002.001.00-2.00-1.00-2.00----------1.00-1.00--1.00-------1.00-1.00--1.00---1.00--1.00----1.00-----------
................................................................................................................................................................................................................................................................................................................................CCCTCCTCCCCGCCGGGGC...........193.000.00----------------------------1.00----------1.00---1.00---------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGGAGT..............................................................................2312.0042.00-----1.00---1.00-------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CAGCCCCTGAACTGCCACCCCCTCCCCAGT.................................................302.000.002.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GAACTGCCACCCCCTCCCCAGT.................................................222.000.00---------------------------------1.00--1.00----------------------------------
...............................................................................................................................................................................................................................................................................CAGCCCCTGAACTGCCACCCCCTCCCCAGA.................................................302.000.00-------1.00------------------------1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................CTGCCACCCCCTCCCCAGAGTT..............................................221.000.001.00----------------------------------------------------------------------
..................................................................................................................................................CAGGCCCGGCCATGGACCCTGGAG....................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00--------------
.........CGGAATGTCCTGGAGCTTT..................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00-----------------------------------
................................................TGGTGAGGGTCCTCTGACC...........................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------1.00------------------
.................................................................................................................................................................................................................................................................................................................................CCTCCTCCCCGCCGTGGC...........181.000.00----1.00------------------------------------------------------------------
.................CCTGGAGCTGATTTATGGGCAGACTCTG.................................................................................................................................................................................................................................................................................................................2811.001.00-----------------1.00-----------------------------------------------------
.............................................................................................................................................................ATGGACCCTGGAGTGATGCAGAC..........................................................................................................................................................................2311.001.00----1.00------------------------------------------------------------------
.ACATTGCCCGGAATGTCCACT........................................................................................................................................................................................................................................................................................................................................211.000.00--------------------------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................CAGCCCCTGAACTGCCACCCCCTAT......................................................251.000.00------------------------------------------------1.00----------------------
...................................................................................................................TCCTGTACCTGCCTCGAG.........................................................................................................................................................................................................................181.000.00-----------------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................................TCTCGGGGAGGGGAGGGCACTGG.................................................................................2311.001.00----------1.00------------------------------------------------------------
............................................................................................................CCGGGGGTCCTGTACTT.................................................................................................................................................................................................................................171.000.00---------------1.00-------------------------------------------------------
................................TGGGCAGACTCTGACCTGGC..........................................................................................................................................................................................................................................................................................................201.000.00--------1.00--------------------------------------------------------------
................................TGGGCAGACTCTGACCTG............................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------1.00------------
................................................................................................................................................................................................................................................................................................................................CCCTCCTCCCCGCCGGGG............181.000.00-------------------------------------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................GAACTGCCACCCCCTCCCCAGTA................................................231.000.00-------------------------------------1.00---------------------------------
........................................................................................................................................................................................................................................................TCGGGGAGGGGAGGGCACTGGA................................................................................2211.001.00------------1.00----------------------------------------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGGAT...............................................................................2211.001.001.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................CCCCTCCTCCCCGCCGTCGCG..........211.000.00---------------------1.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................GCCCCTCCTCCCCGCTCCC.............191.000.00--------------------------1.00--------------------------------------------
.......................................................................................................................................................................................................................................................CTCGGGGAGGGGAGGTC......................................................................................171.000.00----------------------------------------------------------------1.00------
................................TGGGCAGACTCTGACCTGGTGAGGGT....................................................................................................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------1.00-------
......................................................................................................................................................................................................................................................................................TGAACTGCCACCCCCTCCCCAGAAT...............................................251.000.00--------1.00--------------------------------------------------------------
.........CGGAATGTCCTGGAGCTGATTTATGG...........................................................................................................................................................................................................................................................................................................................2611.001.00-------------------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................CTCGGGGAGGGGAGGGCAC....................................................................................1911.001.00----------------------------------------1.00------------------------------
...............................ATGGGCAGACTCTGACCTGGCTG........................................................................................................................................................................................................................................................................................................231.000.00-----------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGGA................................................................................2111.001.00---------------------------1.00-------------------------------------------
....................GGAGCTGATTTATGGGCA........................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------1.00------------------------
........................................................................................................................................................CGGCCATGGACCCTGGAG....................................................................................................................................................................................1811.001.00--------------------1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................CTCGGGGAGGGGAGGGCACTGG.................................................................................2211.001.001.00----------------------------------------------------------------------
.......CCCGGAATGTCCTGGAC......................................................................................................................................................................................................................................................................................................................................171.000.00----1.00------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGCAGCCCCTGAACTCTG...............................................................181.000.00-------------------------------------------------------------1.00---------
..............................................................................................................................................................TGGACCCTGGAGTGATGC..............................................................................................................................................................................1811.001.00----------------------1.00------------------------------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGGAA...............................................................................2211.001.00---1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................................GGGCACTGGAGCAGCCCCTGAACTGC................................................................2611.001.00-------------------------1.00---------------------------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACTGG.................................................................................2011.001.00----------------1.00------------------------------------------------------
.........................................................................................................CCCCCGGGGGTCCTGACA...................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00-------------------------
.........................................................................................................................................................................................................................................................CGGGGAGGGGAGGGCACGGG.................................................................................201.000.00---1.00-------------------------------------------------------------------
...........GAATGTCCTGGAGCTGA..................................................................................................................................................................................................................................................................................................................................1720.500.50------------------------------------------------------------------0.50----
.............................................................................................................................................................................................................................................................................................................................CGCCCCTCCTCCCCGCCG...............1820.500.50-------------------------------------------------------------------0.50---
.........CGGAATGTCCTGGAG......................................................................................................................................................................................................................................................................................................................................1530.330.33--------------------------------------------------------------------0.33--
.............................................................................................................................................................................................................................................................................................................................CGCCCCTCCTCCCCGC.................1660.170.17---------------------------------------------------------------------0.17-

Antisense strand
GACATTGCCCGGAATGTCCTGGAGCTGATTTATGGGCAGACTCTGACCTGGTGAGGGTCCTCTGCTTGCCTCCTACTGTCTGGCCCCTCGGTCAGTGCCCCTTTCCCCCCGGGGGTCCTGTACCTGCCTCCCCCTGGGGCCACAGCCAGGCCCGGCCATGGACCCTGGAGTGATGCAGACCCTAACCCCGGGGACTCAGTTTTGGCCACTGTCACATGCCCTGCCCGTGGTCTGGAACCAGCCTGATCTCGGGGAGGGGAGGGCACTGGAGCAGCCCCTGAACTGCCACCCCCTCCCCAGGCTGGGGGTGCTCTTCTCGCCCCTCCTCCCCGCCGTGCAGATCATCAAGC
..........................................................................................................................................................................................................................................................(((((((((..((((..((.......)).....))))..)))))))))....................................................
....................................................................................................................................................................................................................................................245....................................................300................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040036(GSM532921)
G243N. (cervix)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
....................................................................................................CTTTCCCCCCGGGGGAGGC....................................................................................................................................................................................................................................... 195.000.00-------------2.00------------------------------------1.00--1.00------1.00----------
.......................................................................................................................................................................................................................................................................................GAACTGCCACCCCCTTTGA.................................................... 194.000.00--4.00--------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................CCTGAACTGCCACCCCCACC...................................................... 201.000.00-----------------------------------------1.00-----------------------------
................................................................................................................................................GCCAGGCCCGGCCATGGGGG.......................................................................................................................................................................................... 201.000.00---------------------------------------------------------1.00-------------
...............................................................................CTGGCCCCTCGGTCAGTGCCCCTTT...................................................................................................................................................................................................................................................... 251.000.00---------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................CCTCCTCCCCGCCGTCGC........... 181.000.00-------------------------------------------------1.00---------------------
......................................................................................................................................................................................................................................................................................TGAACTGCCACCCCCTCA...................................................... 181.000.00--1.00--------------------------------------------------------------------
.............................................................CTGCTTGCCTCCTACTGTG.............................................................................................................................................................................................................................................................................. 191.000.00------------------------1.00----------------------------------------------
........................................................................................................................................................................................................................................................................................CCCAGCCTGGGGAGGGGGTGGCAGTT............................................ 2611.001.00------------------------------1.00----------------------------------------
............................................................................................................................................................................................................................................................................................................................TCGCCCCTCCTCCCCTAT................ 181.000.00--------------------------------------1.00--------------------------------
...............................................................................................................................................................................................................................................................................................CCAGCCTGGGGAGGGGGT............................................. 1850.400.40-----------------------------------------------------------------0.40-----
.................................................................................................................................................................................................................................................................CTGCTCCAGTGCCCTCC............................................................................ 1740.250.25-----------------------------------------------------------------0.25-----
........................................................................................................AGGACCCCCGGGGGG....................................................................................................................................................................................................................................... 1590.110.11----------------------------------------------------------------------0.11