ID: uc002juf.2_intron_15_0_chr17_76089206_f
GENE: TNRC6C(16)
chr17:76089156-76089750+


(1)
BRAIN
(2)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(5)
HEART
(2)
LIVER
(1)
OTHER
(22)
SKIN

Sense strand
ATCTGACAGTGATAAAATCTCAAATGGCTCTAGCATCAACTGGCCCCCAGGTAAGACCATGCAACACTTCTGTGCAACAGCAGCAGGTCAGAATGTGCTCCAAGCCTGCAGAGAGTGATTAGGCTGAGAGGACCCAGAATCTGAGCTAAGGATCTGGAAGCGTTAAGCCCAGAGCTTTGGCATTTTCCTTGGAAATCCATTTGTCAGATCAATTTTGGGTATGGTTAGCATCAGGCATTTTTCTGTAAACCCTTAGTTCAGCATGAGGAGTGGAAGGGGTGGCAGGGAGGAAGCACACTGCACACTATCCGGTAAAACTATTCCAACCCTGTGTGAAAACTAGCTTAATATGATAGCTGTGATACCTGGTTCTAGTTTGTTCCAAAGGATTGATTGCTTTAATGAAAGAGAGTATAAGGTGTACCTCTAATTTAATTAGCAGATTATAAAAATTTCTACAAACAGGACAAAACATCTTTTAAAATTTCGTGAATCAATGTGCCGGTGTTCTGATCTGTGGCTTCTCATTTTGGTTTCTTAAACAGAATTCCATCCGGGAGTTCCATGGAAAGGACTGCAGAATATTGACCCTGAG
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((..(((((((..((((..((((........))))...)))).....)))))))...)))))...........................................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................446................................................................................................545................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR040042(GSM532927)
G428N. (cervix)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189787SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGGCTTCTCATTGA................................................................1937.000.0010.009.00--1.00-2.00-2.001.00-----1.001.00-1.001.00--1.00-1.00--1.00--1.00-1.00-1.00--1.001.00----
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGCAGAATATTGACC.....1912.002.00------------2.00------------------------------
...........ATAAAATCTCAAATGGCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-------1.00--1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGGACTGCAGAATATTG........2211.001.00---1.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGGAAAGGACTGCAGAATATTGAA......281.000.00---------------------1.00---------------------
...........................................................................................................................................TCTGAGCTAAGGATCTGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------1.00---------------------------------
....................................................................................................................................................................................................................TTTTGGGTATGGTTATGT.............................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------1.00--------------
......................................................................................................................................................................................................ATTTGTCAGATCAATACA...........................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00----------------------------
.....................AAATGGCTCTAGCATCAACTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----1.00--------------------------------------
........................................................................................................................AGGCTGAGAGGACCCAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----1.00-------------------------------------
...........................................................................................................................................TCTGAGCTAAGGATCTGGAAGCGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................GTGATACCTGGTTCTC.............................................................................................................................................................................................................................161.000.00--------------------------1.00----------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAGGACTGCAGAATATTGACCCTGA.3011.001.00-----------------1.00-------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCATGGAAAGGACTGCAGAATATTG........2911.001.00-----1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGAGTTCCATGGAAAGGACTGCAGAAT............3011.001.00-------------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGTTCCATGGAAAGGA.....................1911.001.00-----------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAATTAGCAGTTTG.....................................................................................................................................................191.000.00----------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGGAGTTCCATGGAAAGG......................2211.001.00----------------------------------------1.00--
.TCTGACAGTGATAAAATCTCAAATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------1.00----------------------
......................AATGGCTCTAGCATCAACTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------1.00-------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACAGGACAAAAAGTA.......................................................................................................................191.000.00-----------------------------------1.00-------
........................................................................................................................................GAATCTGAGCTAAGGATCTGGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------
..........................................................................CAACAGCAGCAGGTCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------1.00------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGCTTCTCATTTCCT..............................................................201.000.00-------------------------------1.00-----------
.......................ATGGCTCTAGCATCAACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---1.00---------------------------------------
.......................................................................................................................................................................................................................................................AACCCTTAGTTCAGCATTTGT.......................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------1.00-------------
.................................................................................................................................................................................................................................TAGCATCAGGCATTTTGTG...............................................................................................................................................................................................................................................................................................................................................................191.000.00-------1.00-----------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAGGACTGCAGAAT............1920.500.50-----------------------------------------0.50-

Antisense strand
ATCTGACAGTGATAAAATCTCAAATGGCTCTAGCATCAACTGGCCCCCAGGTAAGACCATGCAACACTTCTGTGCAACAGCAGCAGGTCAGAATGTGCTCCAAGCCTGCAGAGAGTGATTAGGCTGAGAGGACCCAGAATCTGAGCTAAGGATCTGGAAGCGTTAAGCCCAGAGCTTTGGCATTTTCCTTGGAAATCCATTTGTCAGATCAATTTTGGGTATGGTTAGCATCAGGCATTTTTCTGTAAACCCTTAGTTCAGCATGAGGAGTGGAAGGGGTGGCAGGGAGGAAGCACACTGCACACTATCCGGTAAAACTATTCCAACCCTGTGTGAAAACTAGCTTAATATGATAGCTGTGATACCTGGTTCTAGTTTGTTCCAAAGGATTGATTGCTTTAATGAAAGAGAGTATAAGGTGTACCTCTAATTTAATTAGCAGATTATAAAAATTTCTACAAACAGGACAAAACATCTTTTAAAATTTCGTGAATCAATGTGCCGGTGTTCTGATCTGTGGCTTCTCATTTTGGTTTCTTAAACAGAATTCCATCCGGGAGTTCCATGGAAAGGACTGCAGAATATTGACCCTGAG
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((..(((((((..((((..((((........))))...)))).....)))))))...)))))...........................................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................446................................................................................................545................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR040042(GSM532927)
G428N. (cervix)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189787SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATTTCTACAATCC................................................................................................................................... 196.000.00--6.00----------------------------------------
....................................CAACTGGCCCCCAGGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00---------------------------------------1.00---
..............................................................................................................................................................................................................................................................AGTTCAGCATGAGGACTG................................................................................................................................................................................................................................................................................................................................... 181.000.00----1.00--------------------------------------
.................................CATCAACTGGCCCCCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00-----------------------1.00-------------------
...................................................................................................................TGATTAGGCTGAGAGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00---------------------------------1.00---------
.............................................................................................................................................................................................................................................................................................................................CTATTCCAACCCTGTAAA.................................................................................................................................................................................................................................................................... 181.000.00-------------------------1.00-----------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCTGTTTAAG........................................... 1640.250.25------------------------------------------0.25
....................................................................................................................................................................................................................................................................................................................................................................................................CATTAAAGCAATCAAT............................................................................................................................................................................................... 1650.200.20-------------0.20-----------------------------