ID: uc002jnx.3_intron_1_0_chr17_73317909_r.3p
GENE: (4)
chr17:73317859-73318108-


(2)
B-CELL 		(4)
BREAST 		(38)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(11)
HELA 		(6)
LIVER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCTGGATGTTGTCCTGGTGCCCATCATTCATAGGGAGAGGTCCGTCCCAGGGACACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAGTGCTGCTGGGACAGTGGTTCTCTCGAGATAGCTCCTATATGGAAATACCCTCGATTTGCCAAGTTAGAGCCTTTAGCCGGTCACATGTGCTTTCTGTCCCTCCCAGGTTTGGAAACGATGTGCAGCACTTCAAGGTGCTCCGAGATGGAGCCGGGA
.......................................................(((((((((....)))........(((.(((....))).))).))))))..................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		GSM359207(GSM359207)
HepG2_tot_up. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		GSM359185(GSM359185)
hepg2_tap_pasr. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGT......................................................................................................................................................................301115.00115.00-17.0016.00-12.0014.0016.001.0011.006.006.00--2.00---5.00--4.004.00-----------------1.00---------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................39133.0033.0032.00-----------------1.00------------------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCT.............................................................................................................................................................................23131.0031.00-4.002.001.005.003.00--2.002.001.00------------3.002.001.00--------1.00-----1.00---------------------1.001.00-1.00-------
.......................................................CCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAG...............................................................................................................................................................36124.0024.00---1.00---11.00---5.00-------3.00--4.00--------------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCC....................................................................................................................................................................32117.0017.00---15.00------------------------1.00---------1.00----------------------------------
......................................................ACCCAGTGAGGAAACTTGT.................................................................................................................................................................................19110.0010.004.00------------1.00---------------------------------1.00----------1.00-----1.00--1.001.00----
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................4018.008.00----------------5.00-2.00-------------1.00----------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTG..........................................................................................................................................................................2617.007.00--------------------------2.00--2.00----1.00-------------1.00-----1.00------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCA........................................................................................................................................................................2815.005.00------------3.00--1.00------------------------------1.00--------------------------
.....................................................................TTGTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................2514.004.00--------------1.00--------1.00------------1.00-------------1.00----------------------
.......................................................CCCAGTGAGGAAACTTGTTGCT.............................................................................................................................................................................2214.004.00-------1.00---1.00-------2.00-----------------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAG.......................................................................................................................................................................2914.004.00---------------3.00-------------------1.00-------------------------------------
.................................................................AAACTTGTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................2914.004.00------------3.00------------------------1.00-----------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGG..............................................................................................................................................................3813.003.00------------------1.00-------------1.00----------1.00-----------------------------
.....................................................CACCCAGTGAGGAAACTTGTTGCT.............................................................................................................................................................................2413.003.00-1.001.00-1.00--------------------------------------------------------------------
........................................................CCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGG..............................................................................................................................................................3612.002.00-----------1.00----------------1.00--------------------------------------------
............................................................................................................................................................................................................GGAAACGATGTGCAGCACT...........................1912.002.00-------------------------1.00-------------------1.00---------------------------
.........................................................................................AGGAGTGCTGCTGGGACAG..............................................................................................................................................1912.002.00---------------------------2.00---------------------------------------------
..............................................................AGGAAACTTGTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................3212.002.00-------------2.00-----------------------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGC.........................................................................................................................................................................2712.002.00---------------2.00---------------------------------------------------------
........................................................................................................................................................................................................GTTTGGAAACGATGTGCAG...............................1912.002.00---------------------------------2.00---------------------------------------
.............................................................................................................................................................................................................GAAACGATGTGCAGCACTTCAA.......................2211.001.00-------------------------------------------------1.00-----------------------
.......................................................................GTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................2311.001.00------------------------1.00------------------------------------------------
..........................................................AGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAGAA..........................................................................................................................................................381.000.001.00------------------------------------------------------------------------
.....................................................CACCCAGTGAGGAAACTTGTTGCTCTGCAGTCC....................................................................................................................................................................3311.001.00---1.00---------------------------------------------------------------------
....................................................................CTTGTTGCTCTGCAGTCC....................................................................................................................................................................1811.001.00-----------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................TTGGAAACGATGTGCAGCA.............................1911.001.00------------------------------1.00------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAGA...........................................................................................................................................................4111.008.00----------------1.00--------------------------------------------------------
.............................................................GAGGAAACTTGTTGCTCT...........................................................................................................................................................................1811.001.00------------------------------------------1.00------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCC...................................................................................................................................................................3311.001.001.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CGAGATGGAGCCGGGCGGC191.000.00------------------------------------------------------------1.00------------
.................................................................AAACTTGTTGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................2811.001.00--------------1.00----------------------------------------------------------
.........................................................................................................................................................................................................TTTGGAAACGATGTGCAGCA.............................2011.001.00---------------------------------------------------1.00---------------------
...................................................................................................CTGGGACAGTGGTTCTCTCGAGAT...............................................................................................................................2411.001.00----------------------------------------------------1.00--------------------
.............................................................GAGGAAACTTGTTGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................3211.001.00--------------1.00----------------------------------------------------------
......................................................ACCCAGTGAGGAAACTT...................................................................................................................................................................................1711.001.00-------------1.00-----------------------------------------------------------
.....................................................................TTGTTGCTCTGCAGTCCCTGAGGAGA...........................................................................................................................................................2611.004.00------------1.00------------------------------------------------------------
..........................................................................................................................................................................................................TTGGAAACGATGTGC.................................1511.001.00-------------------------------------------------------1.00-----------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGC......................................................................................................................................................................3011.004.00--------------1.00----------------------------------------------------------
........................................................................................................................................................................................................GTTTGGAAACGATGTGC.................................1711.001.00--------------------------------------------1.00----------------------------
..............................................................................TGCAGTCCCTGAGGAACC..........................................................................................................................................................181.000.00-------------------------1.00-----------------------------------------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGTGGA.............................................................................................................................................................391.000.001.00------------------------------------------------------------------------
...............................................................GGAAACTTGTTGCTCTGCAGTCCCTGAGG..............................................................................................................................................................2911.001.00--------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................TGGAAACGATGTGCAGCACTTT.........................221.000.00---------------------------------------------------------------------1.00---
.....................................................................TTGTTGCTCTGCAGTCCCTGAGGAGTGCTGC......................................................................................................................................................3111.001.00------------------------------------------------------------------1.00------
.........................................................................TGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................2011.001.00-------------------------------1.00-----------------------------------------
...............................................................................................................................................................................................................AACGATGTGCAGCACTTCAAGGTG...................2411.001.00-------------------------------1.00-----------------------------------------
...........................................................GTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................3411.001.00--------------1.00----------------------------------------------------------
.........................................................................................................................................AATACCCTCGATTTGCTTGT.............................................................................................201.000.00----------------------------------------------------------------------1.00--
...........................................................................................................................................................................................................TGGAAACGATGTGCAGCACTTCAAGGT....................2711.001.00---------------------------------------------------------1.00---------------
...........................................................................................................................................................................CGGTCACATGTGCTTTCTGTCCCTCCCAGG.................................................3011.001.00--------------------------------------------------------1.00----------------
......................................................ACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGT.............................................................................................................................................................3911.003.001.00------------------------------------------------------------------------
.......................................................................................................................................................................TAGCCGGTCACATGTGCTTTCTGTCCCTCCCAG..................................................3311.001.00-------------------------------------------------------------1.00-----------
.......................................................CCCAGTGAGGAAACTTGTTGCTCTGCAGT......................................................................................................................................................................2911.001.00-------1.00-----------------------------------------------------------------
.......................................................CCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAG............................................................................................................................................................3911.001.00------------------1.00------------------------------------------------------
.......................................................CCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGA.............................................................................................................................................................3811.001.001.00------------------------------------------------------------------------
................................................................................................................................................................................................................ACGATGTGCAGCACTTCAA.......................1911.001.00------------------------------1.00------------------------------------------
...................................................................ACTTGTTGCTCTGCAGTCCCTGAGG..............................................................................................................................................................2511.001.00-----------------------------------------------------1.00-------------------
.................................................................................................................................................................................................................................AAGGTGCTCCGAGAT..........1530.330.33-----------------------------------0.33-------------------------------------
...................................................................................................................................................................................................................................GGTGCTCCGAGATGG........1550.200.20-----------------------------------------------------------------------0.20-
......................................................ACCCAGTGAGGAAAC.....................................................................................................................................................................................1570.140.14------------------------------------------------------------------------0.14

Antisense strand
TCTGGATGTTGTCCTGGTGCCCATCATTCATAGGGAGAGGTCCGTCCCAGGGACACCCAGTGAGGAAACTTGTTGCTCTGCAGTCCCTGAGGAGTGCTGCTGGGACAGTGGTTCTCTCGAGATAGCTCCTATATGGAAATACCCTCGATTTGCCAAGTTAGAGCCTTTAGCCGGTCACATGTGCTTTCTGTCCCTCCCAGGTTTGGAAACGATGTGCAGCACTTCAAGGTGCTCCGAGATGGAGCCGGGA
.......................................................(((((((((....)))........(((.(((....))).))).))))))..................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		GSM359207(GSM359207)
HepG2_tot_up. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		GSM359206(GSM359206)
HepG2_tot_low. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM359209(GSM359209)
hepg2_biotin_el_hl_a. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		GSM359185(GSM359185)
hepg2_tap_pasr. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................................................................GTGCTTTCTGTCCCTCCCAGGTCTG............................................. 251.000.00-----------------------------------------------------------1.00-------------