ID: uc002jmz.1_intron_4_0_chr17_73145281_r.3p
GENE: HN1(1)
chr17:73145231-73145480-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(10)
CELL-LINE
(1)
FIBROBLAST
(1)
HELA
(2)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES

Sense strand
AAAAAAAAAATTTATTTACTTTTTACATTTTGAGACAGAGTCTTGCTCTGTCACACAGGCTGGAGTTCAGCGGTGTGAACACAGCTCACTGCAGCCTTGACCTCCCGGCCGAAACGATCCTTCTGTCTCAGAGTCCAGTGTAGCTGGGACCACAGGCATGCGCCACTACGCTTGGCTAATTTTTAATTTTTTTTTTATAGAGACACGGGGTCTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTAGGCT
.....................................................((.((((((.(((..(((.(((....))).))).))).)))))))).......................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
....................................................ACACAGGCTGGAGTTCAGCGGCA...............................................................................................................................................................................232.000.002.00--------------------------
......................................................................................................TCCCGGCCGAAACGA.....................................................................................................................................1512.002.00--------2.00------------------
..................................................................................AGCTCACTGCAGCCTTGACCGGG.................................................................................................................................................232.000.002.00--------------------------
..........................................................................................................................................TGTAGCTGGGACCACAGGCATGGGGC......................................................................................262.000.001.001.00-------------------------
......................................................ACAGGCTGGAGTTCAGCGGCGA..............................................................................................................................................................................222.000.00---2.00-----------------------
................................................................................ACAGCTCACTGCAGCCTTGACCTCCCGGGAC...........................................................................................................................................312.000.00-2.00-------------------------
............................................................................................................................................................................TGGCTAATTTTTAATTTTTTTTTTCC....................................................262.000.00-2.00-------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCCACTGT.................................................................................292.000.002.00--------------------------
.....................................................CACAGGCTGGAGTTCGGA...................................................................................................................................................................................182.000.00------------------1.00------1.00-
.........................................................................................TGCAGCCTTGACCTCCCGGACTG..........................................................................................................................................231.000.00-------------1.00-------------
........................................................AGGCTGGAGTTCAGCGGGGGG.............................................................................................................................................................................211.000.00-1.00-------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCAG.....................................................................................251.000.001.00--------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGACAC....................................................................................261.000.001.00--------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCCCCT...................................................................................271.000.001.00--------------------------
.................................................................................................................ACGATCCTTCTGTCTTTTT......................................................................................................................191.000.00--------------------1.00------
.......................................................................................................................................................ACAGGCATGCGCCACTACGCTGGCC..........................................................................251.000.00---1.00-----------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGCCAGGA..................................................................................271.000.001.00--------------------------
.......................................................................................ACTGCAGCCTTGACCTCCCGGCCCA..........................................................................................................................................251.000.001.00--------------------------
..............................................TCTGTCACACAGGCTGGAGGGGG.....................................................................................................................................................................................231.000.00---------------1.00-----------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCCACTGCA................................................................................301.000.001.00--------------------------
......................................................................................................................................................................................................................................TGGTCTTGAACTCCTAGGC.1901.001.00------------1.00--------------
........................................................AGGCTGGAGTTCAGCGGGG...............................................................................................................................................................................191.000.00-1.00-------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGGGGC......................................................................................241.000.001.00--------------------------
.........................................................................................................................................................................................................................ATGTTGCCCAGGCTGGTCTTGAACTCCGGAC..311.000.001.00--------------------------
........................................................AGGCTGGAGTTCAGCTGCA...............................................................................................................................................................................191.000.00------------------------1.00--
......................................................ACAGGCTGGAGTTCAGCGGTGCG.............................................................................................................................................................................231.000.001.00--------------------------
........................................................................................................................................................................................................................................GTCTTGAACTCCTAGGCGG191.000.00-----------------------1.00---
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCGACC...................................................................................271.000.001.00--------------------------
....................................................ACACAGGCTGGAGTTCAGCGGCCC..............................................................................................................................................................................241.000.001.00--------------------------
..............TTTACTTTTTACATTACCT.........................................................................................................................................................................................................................191.000.00--------------1.00------------
...............................................................................................................................................................................................................GGGTCTTGCCATGTTGCCCAGGCGT..................251.000.00----1.00----------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGACC.....................................................................................241.000.001.00--------------------------
..........................................................................................................................................TGTAGCTGGGACCACAGGAACG..........................................................................................221.000.001.00--------------------------
..........................................................................................................................................TGTAGCTGGGACCACAGCGC............................................................................................201.000.001.00--------------------------
.....................................................................................................................................................................................................................................CTGGTCTTGAACTCCTAGGCTTT231.000.00-------1.00-------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCCAGGAT.................................................................................291.000.00-1.00-------------------------
................................................................................ACAGCTCACTGCAGCCTTGACCTCCCTC..............................................................................................................................................281.000.001.00--------------------------
..................................................................................................................................................................CCACTACGCTTGGCTAATTCT...................................................................211.000.00---------1.00-----------------
........................................................AGGCTGGAGTTCAGCGGAGCG.............................................................................................................................................................................211.000.00--1.00------------------------
................................................................................................................................................................................................................GGTCTTGCCATGTTGCCCAGGCTGGCG...............271.000.001.00--------------------------
..........................................................................................................................................TGTAGCTGGGACCACAGGCGAGC.........................................................................................231.000.001.00--------------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGGGCT......................................................................................231.000.00-1.00-------------------------
...............................................................................................................................................................................CTAATTTTTAATTTTTTTCTTG.....................................................221.000.00----------1.00----------------
....................................................ACACAGGCTGGAGTTCAGCGGCGCG.............................................................................................................................................................................251.000.001.00--------------------------
........................................................................................................................................AGTGTAGCTGGGACCACAGGGG............................................................................................221.000.00-1.00-------------------------
.........ATTTATTTACTTTTTACCAT.............................................................................................................................................................................................................................201.000.00----------1.00----------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGCCACTAG.................................................................................281.000.00-1.00-------------------------
........................................................AGGCTGGAGTTCAGCGGTAGG.............................................................................................................................................................................211.000.001.00--------------------------
........................................................AGGCTGGAGTTCAGCGGAGC..............................................................................................................................................................................201.000.00--1.00------------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGCCCACC..................................................................................271.000.001.00--------------------------
..........................................................................................................................................TGTAGCTGGGACCACAGGCATGGGG.......................................................................................251.000.001.00--------------------------
..............................................................................ACACAGCTCACTGCAGCCTTGACCTCCCGGT.............................................................................................................................................311.000.001.00--------------------------
...........................................TGCTCTGTCACACAGGCTGGGGCC.......................................................................................................................................................................................241.000.00-1.00-------------------------
..................................................TCACACAGGCTGGAGTTCAGCGGCGCA.............................................................................................................................................................................271.000.001.00--------------------------
..............................................................................................................................................................................................TTTTTTATAGAGACACGGGGTC......................................2220.500.500.50--------------------------
........................................................................................................................................AGTGTAGCTGGGACCACAGGCATG..........................................................................................2470.430.430.140.29-------------------------
............................................................................................................................................TAGCTGGGACCACAGGCATGCGCCACTAC.................................................................................2980.250.250.25--------------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGCCACTAC.................................................................................2880.250.250.120.12-------------------------
.............................................................................................................................................AGCTGGGACCACAGGCATGCGCCACTACAACC.............................................................................3280.120.250.12--------------------------

Antisense strand
AAAAAAAAAATTTATTTACTTTTTACATTTTGAGACAGAGTCTTGCTCTGTCACACAGGCTGGAGTTCAGCGGTGTGAACACAGCTCACTGCAGCCTTGACCTCCCGGCCGAAACGATCCTTCTGTCTCAGAGTCCAGTGTAGCTGGGACCACAGGCATGCGCCACTACGCTTGGCTAATTTTTAATTTTTTTTTTATAGAGACACGGGGTCTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTAGGCT
.....................................................((.((((((.(((..(((.(((....))).))).))).)))))))).......................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
......................................................................................................................CCTTCTGTCTCAGAGTCCAGTC.............................................................................................................. 223.000.00--3.00------------------------
...................................................................................................................TACACTGGACTCTGAGACAGAAGGATC............................................................................................................ 2712.002.00------2.00--------------------
............................................................................................GAAGGATCGTTTCGGCCGGGAGGTCAAGGCT............................................................................................................................... 3112.002.00-----2.00---------------------
...................................................................................GCTCACTGCAGCCTTGACCTGAGA............................................................................................................................................... 241.000.00-1.00-------------------------
.................................................................................................................................................GGGACCACAGGCATGCGCCACTATG................................................................................ 251.000.00-1.00-------------------------
............................................................................................................................................................................................................ACGGGGTCTTGCCATGTTGCCCAGCTCT.................. 281.000.00----------------1.00----------
....................................................................................CTCACTGCAGCCTTGACCTCCCGTCAC........................................................................................................................................... 271.000.001.00--------------------------
......................................................................................CACTGCAGCCTTGACT.................................................................................................................................................... 161.000.00-----------------1.00---------
.........................................................................................................................TCTGTCTCAGAGTCCAGTGGGC........................................................................................................... 221.000.00--1.00------------------------
.................................................................................................................ACGATCCTTCTGTCTCAGAGTCCAGTC.............................................................................................................. 271.000.00-1.00-------------------------
..........................................................................................................................................................................................................................TGTTGCCCAGGCTGGTCTTGAACTCCTAGTG. 311.000.00-1.00-------------------------
.............................................................................................................................................................................................................CGGGGTCTTGCCATGTTGCCCAGGCCTC................. 281.000.001.00--------------------------
..................................................................................AGCTCACTGCAGCCTTGACCTCCCGGCTG........................................................................................................................................... 291.000.00-------1.00-------------------
.............................................................................................................................................AGCTGGGACCACAGGCATTGGG....................................................................................... 221.000.001.00--------------------------
........................................................................................................................................................................................................................CATGTTGCCCAGGCTGGTCTTGTAT......... 251.000.00-------------------1.00-------
...............................................................................................................................................................................................................GGGTCTTGCCATGTTGCCCAGGCTGGTGACT............ 311.000.001.00--------------------------
..................................................................................................................................GAGTCCAGTGTAGCTACT...................................................................................................... 181.000.00---------1.00-----------------
......................................................................................CACTGCAGCCTTGACCTCCCGGTAC........................................................................................................................................... 251.000.00--1.00------------------------
..........................................................................................GCAGCCTTGACCTCCCGCCG............................................................................................................................................ 201.000.00---1.00-----------------------
.................................................................................CAGCTCACTGCAGCCTTGACCTCGAA............................................................................................................................................... 261.000.00-1.00-------------------------
.................................................................................................................................................................................................................................CAGGCTGGTCTTGAACTCCTATAGT 251.000.00----------------------1.00----
........................................TCTTGCTCTGTCACACAGGCTGGCCT........................................................................................................................................................................................ 261.000.00----1.00----------------------
......................................................................................................................CCTTCTGTCTCAGAGTCCAGC............................................................................................................... 211.000.00----1.00----------------------
..............................................................................ACACAGCTCACTGCAGCCTTGACCTC.................................................................................................................................................. 261.000.001.00--------------------------
........................................................................................................................TTCTGTCTCAGAGTCCAGTAGC............................................................................................................ 221.000.00--1.00------------------------
.........................CATTTTGAGACAGAGACG............................................................................................................................................................................................................... 181.000.00-----------1.00---------------
..............................................................................................................................................GCTGGGACCACAGGCATGCGCACTC................................................................................... 251.000.001.00--------------------------
............................................................................................CCGGGAGGTCAAGGCT.............................................................................................................................................. 1601.001.00---------------------1.00-----
................................................................................................................................................................................................................GGTCTTGCCATGTTGCCCAGGCTGGTGCC............. 291.000.00-1.00-------------------------
...........................................................................................................................................................................................................ACCAGCCTGGGCAACATGGCAAGACCCCGTG................ 3120.500.500.50--------------------------
....AAAAAGTAAATAAATTTTTT.................................................................................................................................................................................................................................. 2050.200.20--------------------------0.20