ID: uc002jlo.0
GENE: SLC9A3R1(1)
chr17:72757951-72758200+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(4)
BRAIN 		(8)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(2)
HELA 		(6)
LIVER 		(3)
OTHER 		(6)
SKIN 		(1)
UTERUS

Sense strand
CAGTTAGCTGCGGTGCTGGGTATCCACACAAGTCTTTTGAGTCCTGGGCCAGAACCCTCTCAAATTGCTGTGTAGGGATCTAGGCAAATTTGCATCCTCCCAAACCTTCCTTGGTTGGGGAGATGGGGACAGGCAGAGGACAGGGAAGGCAGAACCTGGGGCACTGTGGAATAGCCATGGACCCTCCCCTGTCCCTGCAGCGCGAGCTTCGGCCTCGGCTCTGTACCATGAAGAAGGGCCCCAGTGGCTA
....................................................................................................................................((((.((((((((.(((.....))).(((..((((((.....)))))).)))..))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAGA.................................................2416.003.002.00---1.001.00------------2.00---------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGC....................................................2115.005.00-----1.00---2.00--1.00----------------------------------1.00----
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAGT.................................................2413.003.00-----1.00-----------1.00-1.00--------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAG..................................................2313.003.00----1.00---------------1.00---------------1.00---------------
.....................................................................................................................................CAGAGGACAGGGAAGGCAGAACCT.............................................................................................2412.002.00-----------------------1.00---------------------1.00------
............................................................................................................................................................................................................AGCTTCGGCCTCGGCTCTGTACC.......................2312.002.00-2.00--------------------------------------------------
...................................................................................................................................................................................................................................ATGAAGAAGGGCCCCAGTG....1912.002.00-------------1.00-----------------------------------1.00--
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGA....................................................2112.001.00-1.00-----------------1.00--------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCA...................................................2212.002.00---------------------------1.00--------------------1.00---
......................................................................................................................................AGAGGACAGGGAAGGCAGAACCTGA...........................................................................................252.000.002.00---------------------------------------------------
.......................................................................................................................................................................................................................CGGCTCTGTACCATGAAGAAGG.............2212.002.00-------2.00--------------------------------------------
..................................................................................................................................................................................................................................CATGAAGAAGGGCCCCAGTGGC..2212.002.002.00---------------------------------------------------
...................................................................................................................................GGCAGAGGACAGGGAAGGCAAGA................................................................................................232.000.00-----------2.00----------------------------------------
......................................................................................................................................................................................................................TCGGCTCTGTACCATGAAGAAGGGCC..........2612.002.00-2.00--------------------------------------------------
.....................................................................................................................................CAGAGGACAGGGAAGGCAGAA................................................................................................2112.002.00--1.00-----------1.00-------------------------------------
............................................................................................................................................................TGGGGCACTGTGGAATAGCCATGGAC....................................................................2611.001.00-----------------1.00----------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAATTT...............................................2611.002.00----1.00-----------------------------------------------
........................................................................................................................................................................................................................GGCTCTGTACCATGAAGAAGGG............2211.001.001.00---------------------------------------------------
.....................................................................................................................................CAGAGGACAGGGAAGGCAGAACCTGG...........................................................................................2611.001.001.00---------------------------------------------------
..............................................................................................................TTGGTTGGGGAGATGGGGACA.......................................................................................................................2111.001.00--------------------------------------1.00-------------
........................................................................................................................................................................................................CGCGAGCTTCGGCCTCGGCT..............................2011.001.00--------------1.00-------------------------------------
..................................................................................................................................AGGCAGAGGACAGGGAAGGCAGA.................................................................................................2311.001.00--1.00-------------------------------------------------
...........................................................................................................................................................CTGGGGCACTGTGGAATAGCCATGGA.....................................................................2611.001.00-1.00--------------------------------------------------
......................................................................................................................................................................................................................TCGGCTCTGTACCATGAAGAAGGG............2411.001.00-1.00--------------------------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAT..................................................2311.002.00----1.00-----------------------------------------------
.............................................................................................................................................................................................................GCTTCGGCCTCGGCTCTGTA.........................2011.001.00-1.00--------------------------------------------------
...........................................................................................................................................ACAGGGAAGGCAGAACCTGG...........................................................................................2011.001.001.00---------------------------------------------------
.....................................................................................................................................CAGAGGACAGGGAAGGCTGAA................................................................................................211.000.00--1.00-------------------------------------------------
.....................................................................................................................................CAGAGGACAGGGAAGGCAGAAA...............................................................................................2211.002.00----------------------------1.00-----------------------
...............................................................................................................................................................GGCACTGTGGAATAGTGA.........................................................................181.000.00---------------------------------1.00------------------
........................................................................................................................................AGGACAGGGAAGGCAGAACCTG............................................................................................2211.001.00-------------------------------1.00--------------------
............................................................................................................................................................................................................AGCTTCGGCCTCGGCTCTGTACCATGAAGAAGGG............3411.001.00-1.00--------------------------------------------------
..................................................................................................................................................................................................................GGCCTCGGCTCTGTACCATGAAGAA...............2511.001.00--------1.00-------------------------------------------
.............................................................................................................................................................................................................GCTTCGGCCTCGGCTCTGTACC.......................2211.001.00--------1.00-------------------------------------------
.........................................................................................................CTTCCTTGGTTGGGGAGATGGGGACAGGCAG..................................................................................................................3111.001.00-----------------------------------1.00----------------
....................................................................................................................................................................................ACCCTCCCCTGTCCCTGCAGTAA...............................................231.000.00--------------------1.00-------------------------------
...................................................................................................................................................................................................................GCCTCGGCTCTGTACCATGAAGAAGG.............2611.001.00---------------1.00------------------------------------
..........................................................................................................................................................................................................CGAGCTTCGGCCTCGGCTCTGTACCATGAAGAAGG.............3511.001.001.00---------------------------------------------------
................................................................................................................................................................................ATGGACCCTCCCCTGTCCCTGCAGA.................................................2511.001.00---------------------------------------1.00------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTG.....................................................2011.001.00--------------------------------1.00-------------------
.....................................................................................................................................................................................................CAGCGCGAGCTTCGGCCTCGGCTCTGTACC.......................3011.001.00----1.00-----------------------------------------------
...................................................................................................................................................................................................................GCCTCGGCTCTGTACCATGAAGAA...............2411.001.00------1.00---------------------------------------------
................................................................................................................................................................................................................TCGGCCTCGGCTCTGTA.........................1711.001.00-------------------------1.00--------------------------
................................................................................................................................................................................ATGGACCCTCCCCTGTCCCTGCAG..................................................2411.001.00-----------------------------1.00----------------------
.....AGCTGCGGTGCTGGGTACCC.................................................................................................................................................................................................................................201.000.00---1.00------------------------------------------------
..............................................................................................................................................................................................................CTTCGGCCTCGGCTCTGTACCATGAAGAAGGGC...........3311.001.00-1.00--------------------------------------------------
...................................................................................................................................................................................................................................ATGAAGAAGGGCCCCAGT.....1811.001.00-------1.00--------------------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAGAT................................................2511.003.00----------------------------------------1.00-----------
.....................................................................GTGTAGGGATCTAGGCA....................................................................................................................................................................1711.001.00--------1.00-------------------------------------------
....................................................................................................................................GCAGAGGACAGGGAAGGCAGAAC...............................................................................................2311.001.00----------------------1.00-----------------------------
....................................................................................................................................................................................................................CCTCGGCTCTGTACCATGAAGAAGGG............2611.001.00---------------------1.00------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGAAT..................................................2311.001.00------------1.00---------------------------------------
........................................................................................................................................AGGACAGGGAAGGCAGAACC..............................................................................................2011.001.001.00---------------------------------------------------
.........................................................................................................................................................................................................GCGAGCTTCGGCCTCGGCT..............................1911.001.00----------------1.00-----------------------------------
..................................................................................................................................AGGCAGAGGACAGGGAAGGCAGAT................................................................................................2411.001.00----------------1.00-----------------------------------
.................................................................TGCTGTGTAGGGATCTAGGCAAA..................................................................................................................................................................2311.001.00--1.00-------------------------------------------------
..................................................................................................................................AGGCAGAGGACAGGGAAGGCAGAAC...............................................................................................2511.001.00-------------------------------------------1.00--------
....................................................................................................................................................................................................GCAGCGCGAGCTTCGGCCTCGGCTC.............................2511.001.00------1.00---------------------------------------------
...................................................................CTGTGTAGGGATCTAGGCAAA..................................................................................................................................................................2111.001.00------------------------------------------1.00---------
......................................................................................................................................................................................................AGCGCGAGCTTCGGCCTCGGC...............................2111.001.00------1.00---------------------------------------------
..................................................................................................................................................................................................................................CATGAAGAAGGGCCCCAGTGG...2111.001.001.00---------------------------------------------------
..................................................................................................................................AGGCAGAGGACAGGGAAGGCA...................................................................................................2111.001.00--1.00-------------------------------------------------
.............................................................................................................................................AGGGAAGGCAGAACCTGGGG.........................................................................................2011.001.00----------------------------------1.00-----------------
.....................................................................................................................................CAGAGGACAGGGAAGGCAGAACC..............................................................................................2311.001.00-------------------------------------1.00--------------
............................................................................................................................................................................................................AGCTTCGGCCTCGGCTCTGTA.........................2111.001.00-1.00--------------------------------------------------
...................................................................................................................................................................................................................GCCTCGGCTCTGTACCATGAAGAAGGG............2711.001.00----------1.00-----------------------------------------
..........................................................................................................................................................................................................................CTCTGTACCATGAAGAAGGGCCCCA.......2511.001.00-------------1.00--------------------------------------
............................................................................................................................................CAGGGAAGGCAGAACCTGGGGCACTGCGG.................................................................................291.000.00---1.00------------------------------------------------
...............................................................................................................................................................................................................TTCGGCCTCGGCTCTGTACCATGA...................2411.001.001.00---------------------------------------------------
................................................................TTGCTGTGTAGGGATCTAGGC.....................................................................................................................................................................2111.001.00----------1.00-----------------------------------------
.................................................................................................................................................................................TGGACCCTCCCCTGTCCCTGCAAT.................................................2411.002.00--------------------------------------------1.00-------
................................................................................................................GGTTGGGGAGATGGGGTGC.......................................................................................................................191.000.00--------------------------1.00-------------------------
.............................................................................................................................GGGACAGGCAGAGGACAGGGAAGGCAGAACCTG............................................................................................3311.001.00--1.00-------------------------------------------------
.......................................................................................................................................................................................................GCGCGAGCTTCGGCCTCGGCTCTG...........................2411.001.00-----1.00----------------------------------------------
.....................................TGAGTCCTGGGCCAGCA....................................................................................................................................................................................................171.000.00------------------------------1.00---------------------
...................................................................................................................................................................................................................GCCTCGGCTCTGTACCATGAAGAACC.............2611.001.00-1.00--------------------------------------------------
...................................................................................................................................GGCAGAGGACAGGGAAGGCAGA.................................................................................................2211.001.00------------------------1.00---------------------------
............................................................................................................................................................................................................AGCTTCGGCCTCGGCTCTGTACCATGAAGAAGG.............3311.001.00-1.00--------------------------------------------------
.....................................................................GTGTAGGGATCTAGGCAA...................................................................................................................................................................1811.001.00---------------1.00------------------------------------
............................................................................................................................................................TGGGGCACTGTGGAATAGCCATGGA.....................................................................2511.001.001.00---------------------------------------------------
............................................................................................................................................................................................................AGCTTCGGCCTCGGCTCTGCACC.......................231.000.00----------------------------------------------1.00-----
.................................................................................................................................CAGGCAGAGGACAGGGAAGGCAG..................................................................................................2311.001.001.00---------------------------------------------------
................................................................................................................................................................................................................TCGGCCTCGGCTCTGTACCATGAAGAAGGGCC..........3211.001.001.00---------------------------------------------------
.................................................................................................................................................................................................................CGGCCTCGGCTCTGTACCATGAAGAAG..............2711.001.00-1.00--------------------------------------------------
.....................................................................................................................................................................................................................CTCGGCTCTGTACCATGAAGAAGGG............2511.001.001.00---------------------------------------------------
...................................................................................................................................GGCAGAGGACAGGGAAGGCAG..................................................................................................2120.500.500.50---------------------------------------------------
...........................................................................................................................................ACAGGGAAGGCAGAACC..............................................................................................1720.500.50--------------------------------------------------0.50-

Antisense strand
CAGTTAGCTGCGGTGCTGGGTATCCACACAAGTCTTTTGAGTCCTGGGCCAGAACCCTCTCAAATTGCTGTGTAGGGATCTAGGCAAATTTGCATCCTCCCAAACCTTCCTTGGTTGGGGAGATGGGGACAGGCAGAGGACAGGGAAGGCAGAACCTGGGGCACTGTGGAATAGCCATGGACCCTCCCCTGTCCCTGCAGCGCGAGCTTCGGCCTCGGCTCTGTACCATGAAGAAGGGCCCCAGTGGCTA
....................................................................................................................................((((.((((((((.(((.....))).(((..((((((.....)))))).)))..))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)
.....................................................................................................................................................................................CCCTCCCCTGTCCCTGCAGCGCGAGCCC......................................... 282.000.00---2.00------------------------------------------------
..................................................................................................................................................................................AGCTCGCGCTGCAGGGACAGGGGAGGGTCC.......................................... 3011.001.00---1.00------------------------------------------------
.........................................................TCTCAAATTGCTGTGTCAGC............................................................................................................................................................................. 201.000.00-----------------------------------------1.00----------
............................................................................................GGAAGGTTTGGGAGGATG............................................................................................................................................ 1830.330.33---------------------------------------------------0.33