ID: uc002jgd.1_intron_3_0_chr17_65717643_f.3p
GENE: NOL11(4)
chr17:65718496-65718745+


(1)
BRAIN 		(11)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
CCTGCATTTAATCCAGAGCTGCATTTGACAAATGCGTATTGCTTGTGGTATATGTTTCAAAACGCCCAATTAAGTGTTCTCTGATGTCTTTCTGGTTCTAAAAAATATTTAATGAAAACTTTGATTAAATTTTGATTGATATGTGTCTCCCAGCTGGTGATTTTTGCATCCTATAATTTTTCTTTTTTCTTTTTTTGTAGATGGACAAAGTTTTTCGTAGTATTCAGACATCCTGTTTTAATTTTTATTA
.................................................................................................................(((((....((..(((((.....((......(((.((.....)).))).....))......))))).))..))))).............................................................
.................................................................................................................114...................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTAAG...................................................2478.000.0024.0021.0017.0014.002.00--------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTTTG.....................................................31118.0018.006.007.002.003.00---------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTTG............................................................2416.000.008.005.001.002.00---------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTCG.......................................................2016.000.001.001.009.005.00---------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTTTTG..........................................................2611.000.005.006.00-----------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTCTTG.....................................................315.000.00--4.00--1.00-------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTCAAG...................................................245.000.001.00-2.00--2.00-------------
............................................................................................................................................................................ATAATTTTTCTTTTTTCTTTTTTTTTG...................................................274.000.001.00--2.00-1.00-------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTTTG...........................................................254.000.002.002.00-----------------
............................................................................................................................................................................ATAATTTTTCTTTTTTCTTTTTTTG.....................................................2513.003.00--2.001.00---------------
..............................................................................................................................................................................AATTTTTCTTTTTTCTTTTTGGAC....................................................243.000.00----3.00--------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTCTG.....................................................313.000.00--2.001.00---------------
.............................................................................................................................................................................TAATTTTTCTTTTTTCTTTTTGGAC....................................................252.000.00----2.00--------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTAATG..................................................252.000.00-1.00---1.00-------------
................................................................................................................................................................................TTTTTCTTTTTTCTTTTTTTGTAGCTTC..............................................282.000.00----2.00--------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTTG......................................................302.000.001.00-1.00----------------
..............................................................................................................................................................................AATTTTTCTTTTTTCTTTTTCGAG....................................................241.000.00------1.00------------
.......................................................................................................................................................................................TTTTTCTTTTTTTGTAGCTGC..............................................211.000.00----1.00--------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTG..............................................................221.000.00--1.00----------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTG........................................................281.000.00-1.00-----------------
..................................................................................................................................................................................TTTCTTTTTTCTTTTTTTGGGTT.................................................231.000.00------1.00------------
..................................................................................................................................................................................TTTCTTTTTTCTTTTTTTGTAGCAAG..............................................261.000.00------1.00------------
......................................................................................................................CTTTGATTAAATTTTGATTGAT..............................................................................................................2211.001.00----------1.00--------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTTTTTG...................................................331.000.001.00------------------
..............................................................................................................................................................................................................AAAGTTTTTCGTAGTATTCAGA......................2211.001.00-------------1.00-----
...........................................................................................................................................................................TATAATTTTTCTTTTTTCTTTTTTTTTG...................................................281.000.001.00------------------
...............................................................................................................................................................................................................AAGTTTTTCGTAGTATT..........................1711.001.00----------------1.00--
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTG.......................................................291.000.00-1.00-----------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTCCCT..................................................251.000.00------1.00------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTGGTTT.................................................261.000.00----1.00--------------
........................................................................................................................................................................................TTTTCTTTTTTTGTACCGA...............................................191.000.00----1.00--------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTCAAG..................................................251.000.00--1.00----------------
..............................................................................................................................................................................AATTTTTCTTTTTTCTTTTATTG.....................................................231.000.001.00------------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTCATC...................................................241.000.00-----1.00-------------
.................................................................................................................................................................................................................GTTTTTCGTAGTATTCAGACA....................2111.001.00-------1.00-----------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTACG...................................................241.000.00--1.00----------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTCTTTTTTCG.....................................................311.000.00---1.00---------------
............................................................................................................................................................................ATAATTTTTCTTTTTTCTTTATAG......................................................241.000.00-----1.00-------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTTTTA..........................................................261.000.001.00------------------
........................................................................................................................................................................TCCTATAATTTTTCTTTTTTCTTTTTTTG.....................................................2911.001.00-1.00-----------------
................AGCTGCATTTGACAATCAG.......................................................................................................................................................................................................................191.000.00-----------------1.00-
.............................................TGGTATATGTTTCAAACAAA.........................................................................................................................................................................................201.000.00------------1.00------
...........................................................................................................................................................................TATAATTTTTCTTTTTTCTTTTTTTTTTG..................................................291.000.001.00------------------
.......................................................................................................................................................................ATCCTATAATTTTTCTTTTTTTTTG..........................................................251.000.00-1.00-----------------
...............................................................................................................................................................................................................AAGTTTTTCGTAGTATTCAGACA....................2311.001.00--------1.00----------
.............................................................................................................................................................................TAATTTTTCTTTTTTCTTTTTGGTA....................................................251.000.00-----1.00-------------
....................................................................................................................................................................................TCTTTTTTCTTTTTTTGTATC.................................................211.000.00-----1.00-------------
..........ATCCAGAGCTGCATTTGACAACCCT.......................................................................................................................................................................................................................251.000.00----1.00--------------
.....................................................................................................................................................................................................................................ATCCTGTTTTAATTTTTAATT211.000.00--------------1.00----
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTGTAGACGG..............................................291.000.00------1.00------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTTG.............................................................231.000.00--1.00----------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTCAA....................................................231.000.00--1.00----------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTCAAT...................................................241.000.00---1.00---------------
..................................................................................................................................................................................TTTCTTTTTTCTTTTTTTGTCGTG................................................241.000.00----1.00--------------
......................................................................................................................................................................CATCCTATAATTTTTCTTTTTCTG............................................................241.000.00--1.00----------------
..............................................................................................................................................................................AATTTTTCTTTTTTCTTACAG.......................................................211.000.00-1.00-----------------
.......................................................................................................................................................................ATCCTATAATTTTTCTTTTTTCTTTTG........................................................271.000.001.00------------------
......................................................................................................................................................................................TTTTTTCTTTTTTTGTACGG................................................201.000.00-----1.00-------------
.......................................................................................................................................................AGCTGGTGATTTTTGCA..................................................................................1740.250.25-----0.25-------------
...............................................................................................................................................................................ATTTTTCTTTTTTCTTTTTTTGTA...................................................2450.200.20----0.20--------------
...............................................................................................................................................................................................TTTTTGTAGATGGAC............................................1590.110.11------------------0.11

Antisense strand
CCTGCATTTAATCCAGAGCTGCATTTGACAAATGCGTATTGCTTGTGGTATATGTTTCAAAACGCCCAATTAAGTGTTCTCTGATGTCTTTCTGGTTCTAAAAAATATTTAATGAAAACTTTGATTAAATTTTGATTGATATGTGTCTCCCAGCTGGTGATTTTTGCATCCTATAATTTTTCTTTTTTCTTTTTTTGTAGATGGACAAAGTTTTTCGTAGTATTCAGACATCCTGTTTTAATTTTTATTA
.................................................................................................................(((((....((..(((((.....((......(((.((.....)).))).....))......))))).))..))))).............................................................
.................................................................................................................114...................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.....GCAGCTCTGGATTAAAT.................................................................................................................................................................................................................................... 1711.001.00---------------1.00---
.......TTAATCCAGAGCTGCATG................................................................................................................................................................................................................................. 181.000.00---------1.00---------
.......TTAATCCAGAGCTGCATGAA............................................................................................................................................................................................................................... 201.000.00-----------1.00-------