ID: uc002izx.3_intron_19_0_chr17_60679542_f.3p
GENE: (20)
chr17:60683291-60683540+


(1)
AGO2.ip
(1)
BRAIN
(1)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(3)
LIVER
(2)
OTHER
(1)
SKIN

Sense strand
TCGGGAGGTTGAGGCCGTAATGAGCCATGATCACGCCACTGTACTCAGCCTGGGTGACAGAGCAAGACCCTGTCTCCAAAAAAAAAAAAAAAAAAAACGATATTTCTATTTTCAACAAGATATTTTATTTTGTCTTTTTGTACATGTCTTAAACTTATATGATCATTATTCTAATAATTTATATTTCTTTTTTGTCCCAGGTATTTACCACCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCT
................................................................................................................(((.((((((........)))))).)))..............................................................................................................
.........................................................................74......................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.............................................................................AAAAAAAAAAAAAAAAAAAACGATGT...................................................................................................................................................26616.000.00616.00-----------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGATGT...................................................................................................................................................25100.000.00100.00-----------------------
..............................................................................AAAAAAAAAAAAAAAAAAACG.......................................................................................................................................................2107.007.00---7.00--------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATTGT..................................................................................................................................................272.000.002.00-----------------------
.............................ATCACGCCACTGTACTCAGCCCGGG....................................................................................................................................................................................................252.000.00-2.00----------------------
..........................................ACTCAGCCTGGGTGACAGGACG..........................................................................................................................................................................................221.000.00-1.00----------------------
..........................................................................................................................TTTTATTTTGTCTTTTGCTC............................................................................................................201.000.00--------1.00---------------
.................................................................................................................................................................ATCATTATTCTAATAATTTATATTTCTTTTTTG........................................................3311.001.00-------1.00----------------
......................................CTGTACTCAGCCTGGGTGA.................................................................................................................................................................................................1901.001.00-----------------1.00------
..............................................................................AAAAAAAAAAAAAAAAAAACGC......................................................................................................................................................2201.007.00---------------1.00--------
................................................................................AAAAAAAAAAAAAAAAACGATCACG.................................................................................................................................................251.000.001.00-----------------------
.................................................................................................................................................................ATCATTATTCTAATAATTTATATTTCTTTCTTG........................................................331.000.00-------1.00----------------
...............................................................................AAAAAAAAAAAAAAAAAACG.......................................................................................................................................................2001.001.00---1.00--------------------
...........................................CTCAGCCTGGGTGACAGAGCACGA.......................................................................................................................................................................................241.000.00--------------1.00---------
.......................................................................................................................ATATTTTATTTTGTCTTTATTT.............................................................................................................221.000.00-1.00----------------------
...................................................................................................................................................................CATTATTCTAATAATCGC.....................................................................181.000.00-----1.00------------------
................................................................................AAAAAAAAAAAAAAAAACGATT....................................................................................................................................................221.000.00---1.00--------------------
................................................................................AAAAAAAAAAAAAAAAACGATAGTA.................................................................................................................................................251.000.00---------1.00--------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATTC...................................................................................................................................................261.000.001.00-----------------------
............................................................AGCAAGACCCTGTCTCCTAGA.........................................................................................................................................................................211.000.00--1.00---------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACGT...................................................................................................................................................261.000.001.00-----------------------
................................................................................AAAAAAAAAAAAAAAAACGATTGT..................................................................................................................................................241.000.001.00-----------------------
...........................................................................................................................................................TATATGATCATTATTCTAATA..........................................................................2111.001.00----------------1.00-------
.....................................................................................................ATTTCTATTTTCAACTCT...................................................................................................................................181.000.00------1.00-----------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATCCAG.................................................................................................................................................281.000.001.00-----------------------
..............................................................................................................................................................................TAATTTATATTTCTTTTGTTT.......................................................211.000.00-----1.00------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATTTGT.................................................................................................................................................281.000.001.00-----------------------
................................................................................AAAAAAAAAAAAAAAAACGATAGTGC................................................................................................................................................261.000.00---------1.00--------------
.CGGGAGGTTGAGGCCGAAG......................................................................................................................................................................................................................................191.000.00------------1.00-----------
.............................................................................................................................................................................ATAATTTATATTTCTTTACC.........................................................201.000.00-------------1.00----------
....................................................................................................................................................................................................................................GGGAAAGAACCACCAAAG....1830.670.67--------------------0.67---
..........................................................................................................................................................................................................ATTTACCACCAGAGTGTTTTG...........................2120.500.50-----------------------0.50
......................................................................................................................................................................................................................AGTGTTTTGTGGTTGGGA..................1820.500.50----------------------0.50-
.....................................................................................................................................................................................................................GAGTGTTTTGTGGTTGGGA..................1920.500.50---------------------0.50--
...........................TGATCACGCCACTGTACTCAGCCTGG.....................................................................................................................................................................................................2620.500.50-0.50----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATAT...................................................................................................................................................2650.200.200.20-----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATA....................................................................................................................................................2590.110.11---0.11--------------------

Antisense strand
TCGGGAGGTTGAGGCCGTAATGAGCCATGATCACGCCACTGTACTCAGCCTGGGTGACAGAGCAAGACCCTGTCTCCAAAAAAAAAAAAAAAAAAAACGATATTTCTATTTTCAACAAGATATTTTATTTTGTCTTTTTGTACATGTCTTAAACTTATATGATCATTATTCTAATAATTTATATTTCTTTTTTGTCCCAGGTATTTACCACCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCT
................................................................................................................(((.((((((........)))))).)))..............................................................................................................
.........................................................................74......................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.................................................................................AAAAAAAAAAAAAAAACGAAGG................................................................................................................................................... 222.000.00-1.00--1.00-------------------
......................AGCCATGATCACGCCACTGTGTGG............................................................................................................................................................................................................ 242.000.00-2.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACCC................................................................................................................................................... 242.000.00-2.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATAATG................................................................................................................................................. 282.000.00-2.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGAGGGG.................................................................................................................................................. 252.000.00-2.00----------------------
..................................................................................AAAAAAAAAAAAAAACGACGG................................................................................................................................................... 211.000.00--1.00---------------------
...............................................................................AAAAAAAAAAAAAAAAAACGCGAC................................................................................................................................................... 2401.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACGC................................................................................................................................................... 241.000.00--1.00---------------------
..............................................................................................................TTCAACAAGATATTTTTG.......................................................................................................................... 181.000.00--------1.00---------------
...............................................................................AAAAAAAAAAAAAAAAAACGACGTT.................................................................................................................................................. 251.000.00-1.00----------------------
....................................................................................AAAAAAAAAAAAACGAAGTT.................................................................................................................................................. 201.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGAATT................................................................................................................................................... 241.000.00-1.00----------------------
................................................................................AAAAAAAAAAAAAAAAACGATCTT.................................................................................................................................................. 241.000.00-1.00----------------------
.............................................................GCAAGACCCTGTCTCCACCTT........................................................................................................................................................................ 211.000.00--1.00---------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGACTTC.................................................................................................................................................. 261.000.00-1.00----------------------
............................GATCACGCCACTGTACTCACTGG....................................................................................................................................................................................................... 231.000.00--1.00---------------------
........................CCATGATCACGCCACTAAA............................................................................................................................................................................................................... 191.000.00-----------1.00------------
...............................................................................AAAAAAAAAAAAAAAAAACGAAGG................................................................................................................................................... 241.000.00--1.00---------------------
...............................................GCCTGGGTGACAGAGCAAGACCCTGGGAG.............................................................................................................................................................................. 291.000.00--1.00---------------------
....................................................................................AAAAAAAAAAAAACGATAGTA................................................................................................................................................. 211.000.00-------------------1.00----
.................................................................................AAAAAAAAAAAAAAAACGAATG................................................................................................................................................... 221.000.00----1.00-------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGAAAC................................................................................................................................................... 251.000.00-1.00----------------------
.........................................................................CTCCAAAAAAAAAAAAAAAAAACGAG....................................................................................................................................................... 261.000.00--1.00---------------------
...................................................................................AAAAAAAAAAAAAACGAATG................................................................................................................................................... 201.000.00----1.00-------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGG...................................................................................................................................................... 251.000.00-1.00----------------------
...................................................................................AAAAAAAAAAAAAACGAATTG.................................................................................................................................................. 211.000.00----------1.00-------------
...........................................................GAGCAAGACCCTGTCTCCAAAACGGC..................................................................................................................................................................... 261.000.00-1.00----------------------
............................................................................CAAAAAAAAAAAAAAAAAAAACGAAGG................................................................................................................................................... 271.000.00--1.00---------------------
.....................................................................................AAAAAAAAAAAACGACGTT.................................................................................................................................................. 191.000.00----1.00-------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGAATGC.................................................................................................................................................. 261.000.00-1.00----------------------
......................................CTGTACTCAGCCTGGGTGACGGC............................................................................................................................................................................................. 2301.000.00--1.00---------------------
................................................................................AAAAAAAAAAAAAAAAACGACTTT.................................................................................................................................................. 241.000.00--1.00---------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGATAAAG................................................................................................................................................. 271.000.00-----1.00------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACGTG.................................................................................................................................................. 251.000.00-1.00----------------------
.................................................................................AAAAAAAAAAAAAAAACGATCCTG................................................................................................................................................. 241.000.00--1.00---------------------
...................................................................CCCTGTCTCCAAAAAAAAATTC................................................................................................................................................................. 221.000.00-1.00----------------------
..................................................................................AAAAAAAAAAAAAAACGATAC................................................................................................................................................... 211.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGAATC................................................................................................................................................... 261.000.00-1.00----------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGCTCT................................................................................................................................................... 2501.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACGAG.................................................................................................................................................. 271.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATAAAG................................................................................................................................................. 281.000.00-1.00----------------------
..................................................................................AAAAAAAAAAAAAAACGATGT................................................................................................................................................... 211.000.00--1.00---------------------
........................................GTACTCAGCCTGGGTGTTT............................................................................................................................................................................................... 191.000.00------------------1.00-----
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGTTT.................................................................................................................................................... 271.000.00--1.00---------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACTCC..................................................................................................................................................... 261.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACTC................................................................................................................................................... 261.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACAAA.................................................................................................................................................. 271.000.00----1.00-------------------
................................................................................AAAAAAAAAAAAAAAAACGAGCT................................................................................................................................................... 231.000.00--1.00---------------------
.........................................................................CTCCAAAAAAAAAAAAAAAAAAAACGAG..................................................................................................................................................... 281.000.00--1.00---------------------
...................................................................................AAAAAAAAAAAAAACGATCTTA................................................................................................................................................. 221.000.00-1.00----------------------
............................................................................CAAAAAAAAAAAAAAAAAAAACGACCCC.................................................................................................................................................. 281.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACAG................................................................................................................................................... 241.000.00-1.00----------------------
................................................................................AAAAAAAAAAAAAAAAACGACCGG.................................................................................................................................................. 241.000.00-----1.00------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGATC.................................................................................................................................................... 251.000.00-1.00----------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGAATA................................................................................................................................................... 251.000.00-------1.00----------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGCGCA................................................................................................................................................... 261.000.00------1.00-----------------
...................................................................CCCTGTCTCCAAAAAAAAAAAAGCC.............................................................................................................................................................. 251.000.00--1.00---------------------
....................................................................CCTGTCTCCAAAAAAAAAAAAAAAAAAAACCC...................................................................................................................................................... 321.000.00--1.00---------------------
...................................................................CCCTGTCTCCAAAAAAAAAAAAAAAAAAAATT....................................................................................................................................................... 321.000.00--1.00---------------------
..................................................................................AAAAAAAAAAAAAAACGAATC................................................................................................................................................... 211.000.00--1.00---------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGCC..................................................................................................................................................... 261.000.00-1.00----------------------
...................................................................CCCTGTCTCCAAAAAAAAAAAAAAAGCG........................................................................................................................................................... 281.000.00-1.00----------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACTGTC.................................................................................................................................................... 271.000.00-1.00----------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGAAGCG.................................................................................................................................................. 261.000.00--1.00---------------------
...............................................................................AAAAAAAAAAAAAAAAAACGCTCT................................................................................................................................................... 2401.000.00------1.00-----------------
..............................................................................AAAAAAAAAAAAAAAAAAACGATC.................................................................................................................................................... 241.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACCCC.................................................................................................................................................. 251.000.00-1.00----------------------
..........................................................................TCCAAAAAAAAAAAAAAAAAAAACAC...................................................................................................................................................... 261.000.00--1.00---------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACAC................................................................................................................................................... 261.000.00-----1.00------------------
...............................................GCCTGGGTGACAGAGCAAGACCCTGTCTGGAC........................................................................................................................................................................... 321.000.00-1.00----------------------
............................................................................CAAAAAAAAAAAAAAAAAAAACGATTGG.................................................................................................................................................. 281.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGAGGCG.................................................................................................................................................. 251.000.00-1.00----------------------
................................................................................AAAAAAAAAAAAAAAAACGAGGG................................................................................................................................................... 231.000.00-1.00----------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGCTTG................................................................................................................................................... 261.000.00-1.00----------------------
...............................................................................AAAAAAAAAAAAAAAAAACGACTAG.................................................................................................................................................. 251.000.00------1.00-----------------
..............................................................................AAAAAAAAAAAAAAAAAAACGATATG.................................................................................................................................................. 261.000.00----1.00-------------------
...............................................................................AAAAAAAAAAAAAAAAAACGAGGCT.................................................................................................................................................. 251.000.00--1.00---------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACATA.................................................................................................................................................. 271.000.00----1.00-------------------
.............................................................................AAAAAAAAAAAAAAAAAAAACGACA.................................................................................................................................................... 251.000.00----1.00-------------------
..............................................................................AAAAAAAAAAAAAAAAAAACGACACG.................................................................................................................................................. 261.000.00-1.00----------------------
.........................................................................TCGTTTTTTTTTTTTTTTTTTTTGGAG...................................................................................................................................................... 2720.500.50-0.50----------------------
...........................................................................TCGTTTTTTTTTTTTTTTTTTTTGG...................................................................................................................................................... 2540.500.50-0.25--------0.25-------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGACA.................................................................................................................................................... 270.250.00--0.25---------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGAT..................................................................................................................................................... 260.250.00-0.25----------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGAGTGG.................................................................................................................................................. 290.250.00-0.25----------------------
...............................AGGCTGAGTACAGTGGCGTG....................................................................................................................................................................................................... 2040.250.25--0.25---------------------
...........................................................................CCAAAAAAAAAAAAAAAAAAAACGAGGG................................................................................................................................................... 280.250.00-0.25----------------------