ID: uc002iux.2_intron_5_0_chr17_55191998_f.3p
GENE: (6)
chr17:55193272-55193521+


(1)
AGO2.ip
(5)
B-CELL
(4)
BRAIN
(9)
BREAST
(23)
CELL-LINE
(5)
CERVIX
(4)
HEART
(5)
LIVER
(1)
OTHER
(7)
SKIN
(1)
XRN.ip

Sense strand
TTCTCACATCCAGGTTTTTCCCTCGGCTGGTCTTGGGCTTGGGGGAGGCTTTGCTTGGGGCCGGTTGCTGTTCCTGTCCCCTGCACTGTGGAGGTTGCAGGCCTCTGAGAGGTAACGCAGGGAGGTGGGTAGTGGCCAGGTGGCCCTTGGTGCCCTGCCCTGGCCCAGGCGTTCCACGCACTCTGCTCCCTACCCTGCAGTAACGGTCATCTGTGCCGCCCCTGGTGCGGACGGGGCCTGGTGGCGAGCC
....................................................................................................................(((((((((.((((((.(((((((.(((.......)))....)))))))...(((.....)))...))))))))).))))))....................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAGT.................................................23131.0031.007.005.00-5.00-----2.002.00-------2.00--1.00-1.00---------1.001.001.00---1.00---------------------1.00-1.00---
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAG..................................................22120.0020.00-1.00--2.00---1.001.001.002.00-2.00--2.00--2.001.00----1.00-------------------1.00--------1.00----1.00--1.00----
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAGA.................................................23113.0020.00----3.00------1.002.00-------1.00-----1.00----1.001.00---------------1.00------1.00--------1.00--
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAGTA................................................2418.008.003.00----2.00--2.00----------------------------1.00-----------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAGTTT...............................................2516.0031.00--6.00----------------------------------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCATT.................................................2313.002.003.00------------------------------------------------------------------
...................................................................................................................................................................................ACTCTGCTCCCTACCCTGCAG..................................................2112.002.002.00------------------------------------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCA...................................................2112.002.00---------------------1.00------------------------------1.00--------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAA..................................................2212.002.00--------------------------------------------------1.00--1.00-------------
..........................................................................................................................................................................................................ACGGTCATCTGTGCCGCCCCTGGCG.......................252.000.00-------1.00---------1.00-------------------------------------------------
.......................................................................................................................GGGAGGTGGGTAGTGTCAG................................................................................................................191.000.00------------------------------------------1.00------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAT..................................................2211.002.00-----1.00-------------------------------------------------------------
..............................TCTTGGGCTTGGGGGAGGC.........................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00---------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCAGAA................................................2411.0020.00---------------------------1.00---------------------------------------
...........AGGTTTTTCCCTCGGTGCT............................................................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------------------
.................................................................................................................................................................................................................................TGCGGACGGGGCCTGGTGGCGAGC.2411.001.00--------------1.00----------------------------------------------------
...............................................................................................................................................................................................ACCCTGCAGTAACGGTCATC.......................................2011.001.00------1.00------------------------------------------------------------
..................................................TTGCTTGGGGCCGGTAGC......................................................................................................................................................................................181.000.00------------------------------1.00------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTG.....................................................1911.001.00--------------------------------------------------------1.00----------
...................................................................................................................................................................................................................................CGGACGGGGCCTGGTGGCGAG..2111.001.00------------------------------------------------------------1.00------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGCCG..................................................2211.001.00----------------------------------------------------------1.00--------
................TTTCCCTCGGCTGGTAAG........................................................................................................................................................................................................................181.000.00-------------------------------------------1.00-----------------------
..............................................................................................................................................................................................TACCCTGCAGTAACGATTG.........................................191.000.00-1.00-----------------------------------------------------------------
.................................................................................................................AACGCAGGGAGGTGGAGAG......................................................................................................................191.000.00-------1.00-----------------------------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCTGC....................................................2011.001.00------1.00------------------------------------------------------------
.................................TGGGCTTGGGGGAGGCTTTGC....................................................................................................................................................................................................2111.001.00-----------------1.00-------------------------------------------------
......................................................................................................................................................TGCCCTGCCCTGGCCCAGGGGAA.............................................................................231.000.00------1.00------------------------------------------------------------
............................................................................................................................................................................................................................CCTGGTGCGGACGGGGCCTGGTGGCGA...2711.001.00----------------------------1.00--------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCCAGT...................................................211.000.00----------------------1.00--------------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACCCT......................................................1820.500.50-----0.50-------------------------------------------------------------
...................................................................................................................CGCAGGGAGGTGGGTAG......................................................................................................................1720.500.50------------0.50------------------------------------------------------
............................................................................TCCCCTGCACTGTGGAGG............................................................................................................................................................1820.500.50-----------------------------------------------------------------0.50-

Antisense strand
TTCTCACATCCAGGTTTTTCCCTCGGCTGGTCTTGGGCTTGGGGGAGGCTTTGCTTGGGGCCGGTTGCTGTTCCTGTCCCCTGCACTGTGGAGGTTGCAGGCCTCTGAGAGGTAACGCAGGGAGGTGGGTAGTGGCCAGGTGGCCCTTGGTGCCCTGCCCTGGCCCAGGCGTTCCACGCACTCTGCTCCCTACCCTGCAGTAACGGTCATCTGTGCCGCCCCTGGTGCGGACGGGGCCTGGTGGCGAGCC
....................................................................................................................(((((((((.((((((.(((((((.(((.......)))....)))))))...(((.....)))...))))))))).))))))....................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532876(GSM532876)
G547T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................................GGTGCGGACGGGGCCC........... 161.000.00-----------------------------------------1.00-------------------------
...............................................................................................................................................................................................................................GGTGCGGACGGGGCCCCGC........ 191.000.00---------------1.00---------------------------------------------------
.............GTTTTTCCCTCGGCTAAAA.......................................................................................................................................................................................................................... 191.000.00-------------------------------------------------1.00-----------------
...............................................................................................................................................................................................................................GGTGCGGACGGGGCCTCCG........ 191.000.00----------------------------------------1.00--------------------------
.................................................................TGCTGTTCCTGTCCCCTGTGAG................................................................................................................................................................... 221.000.00--------------------------------------1.00----------------------------
...........................TGGTCTTGGGCTTGGAGGC............................................................................................................................................................................................................ 191.000.00--------------------------------------------1.00----------------------
..................................................................................................................................................................................CACTCTGCTCCCTACAATA..................................................... 191.000.00-----------------------------1.00-------------------------------------
......................................................................................................................................................................................................................................ACGGGGCCTGGTGGCGGTCC 201.000.00---------------------------------------------------------1.00---------
...............................................................................................................................................................................................................................GGTGCGGACGGGGCCCCGT........ 191.000.00-----------------------------------------------1.00-------------------
.........................................................................................................................................................................................................................GCCCCTGGTGCGGACCGT............... 181.000.00------------------------1.00------------------------------------------
...........................................................................................................................................................................TTCCACGCACTCTGCTTTT............................................................ 191.000.00---------------1.00---------------------------------------------------
.......................................................TGGGGCCGGTTGCTGCAC................................................................................................................................................................................. 181.000.00------------------------------------1.00------------------------------
...............................................................GTTGCTGTTCCTGTCTGGA........................................................................................................................................................................ 191.000.00--------------1.00----------------------------------------------------
..................................................................................................................................................................................CACTCTGCTCCCTACTATA..................................................... 191.000.00----------------------------------------------1.00--------------------
..................................................................................................................................................................................................................................CCAGGCCCCGTCCGC......... 1560.170.17------------------------------------------------------------------0.17