ID: uc002ioy.1_intron_1_0_chr17_47536099_r.3p
GENE: AK097622(1)
chr17:47536049-47536298-


(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(2)
B-CELL 		(4)
BRAIN 		(4)
BREAST 		(23)
CELL-LINE 		(4)
CERVIX 		(2)
HELA 		(3)
LIVER 		(3)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GTTCTTTTTTTTTTTTTTTTTTTTTTTCAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCAGTTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACGGGCGCGCGAGACCATGCCCAGCTAATTTTTGTATGTTTTTTTTTAGTAGAGACGTGGTTTCAACACATTGGCCAGGCTGGTCTCGAACTCCTGAAGTCG
...............................................................................((.....))...........(((((((((.(((....((((.((....))....))))..))).))))).)))).................................................................................................
........................................................................73...............................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925PAZD5SRR189785GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................TCCGGAGTAGCTGGGACTAC....................................................................................................20020.0020.00---12.00-3.00-3.00--2.00------------------------------------------
....................................................................................................................................CGGAGTAGCTGGGACTAC....................................................................................................1809.009.00---1.00-3.00-4.00--1.00------------------------------------------
.................................................................................................................................CTCCGGAGTAGCTGGGACTAC....................................................................................................2108.008.00---2.00-4.00-1.00---1.00-----------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAAATT.........................................................................................................................................................................................................................318.000.001.00-1.00-1.00-4.00-1.00--------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGGTT..........................................................................................................................................................................................................................307.000.007.00----------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCGGTT..........................................................................................................................................................................................................................317.000.006.001.00---------------------------------------------------
...................................................................................................................................CCGGAGTAGCTGGGACTAC....................................................................................................1907.007.00---3.00---1.00--2.001.00-----------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATG..........................................................................................................................................................................................................................306.000.00--1.00-2.00-1.00--2.00-------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAAAT..........................................................................................................................................................................................................................306.000.00-1.001.00-1.00---1.002.00-------------------------------------------
...........................................................................................................................CTCAGCCTCCGGAGTAGCTGG..........................................................................................................2105.005.00---1.00-1.00-2.00---1.00-----------------------------------------
.............................................................................................................................CAGCCTCCGGAGTAGCTGGGA........................................................................................................2105.005.00-----2.00-2.00--------------------------------------1.00------
..............................................................................................................................AGCCTCCGGAGTAGCTGGGA........................................................................................................2005.005.00---1.00-2.00----------2.00------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACTTT.........................................................................................................................................................................................................................314.000.00-1.002.00-----1.00--------------------------------------------
.............................................................................TGGCTCACTGCAACCTCCAGGCTC.....................................................................................................................................................244.000.004.00----------------------------------------------------
............................................................................................................................TCAGCCTCCGGAGTAGCTGGG.........................................................................................................2104.004.00---2.00---1.00--1.00------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATA..........................................................................................................................................................................................................................304.000.00------4.00----------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACG...........................................................................................................................................................................................................................293.000.00--1.00-2.00------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTAG...........................................................................................................................................................................................................................303.000.00--2.00-----1.00--------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................................................................................................................................293.000.003.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................................................................................................................................283.000.003.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAAGG..........................................................................................................................................................................................................................293.000.002.00-1.00--------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGGGG..........................................................................................................................................................................................................................293.000.003.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGC...........................................................................................................................................................................................................................293.000.003.00----------------------------------------------------
...................................................................................................................................CCGGAGTAGCTGGGACTA.....................................................................................................1802.002.00----------1.001.00-----------------------------------------
.................................................................................................................ATTCTCCTGCCTCAGCCTCCGGTAA................................................................................................................252.000.00---------------2.00-------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATTG.........................................................................................................................................................................................................................312.000.00----1.00----1.00-------------------------------------------
...............................................................................................................................GCCTCCGGAGTAGCTGGGAC.......................................................................................................2002.002.00-----1.00----1.00------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAAACG.........................................................................................................................................................................................................................312.000.00--1.00-----1.00--------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAAAC..........................................................................................................................................................................................................................292.000.001.00---1.00------------------------------------------------
...............................................................................................................................................................AGACCATGCCCAGCTAATTC.......................................................................202.000.00------2.00----------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAACA..........................................................................................................................................................................................................................302.000.00--1.00---1.00----------------------------------------------
..............................ACGGAGTCTCACTCTGTCACCCAGGCCGGC..............................................................................................................................................................................................302.000.002.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGGGG..........................................................................................................................................................................................................................302.000.002.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGCAG..........................................................................................................................................................................................................................302.000.001.00-----1.00----------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACAT..........................................................................................................................................................................................................................302.000.00--1.00---1.00----------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTCG...........................................................................................................................................................................................................................302.000.00----1.00---1.00--------------------------------------------
..............................................................................................................................AGCCTCCGGAGTAGCTGGGACGGG....................................................................................................2402.002.001.001.00---------------------------------------------------
.............TTTTTTTTTTTTTTCAGACGAG.......................................................................................................................................................................................................................222.000.002.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATTAG.........................................................................................................................................................................................................................312.000.00--1.00-----1.00--------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAGC...........................................................................................................................................................................................................................302.000.002.00----------------------------------------------------
....................................................................................................................................CGGAGTAGCTGGGACTACGGGCACG.............................................................................................252.000.001.001.00---------------------------------------------------
...............................................................................................AGTTCCCGGGTTCAAAT..........................................................................................................................................172.000.00--------------------------------1.00------------------1.00-
................................................ACCCAGGCTGGAGTGCAGTGGCGCAACCG.............................................................................................................................................................................292.000.001.001.00---------------------------------------------------
..............................................................................................................................AGCCTCCGGAGTAGCTGGGAC.......................................................................................................2102.002.00---1.00------------1.00------------------------------------
.....................................................................................................................TCCTGCCTCAGCCTCCGGAGTAGCTGGGAGC......................................................................................................312.000.002.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGCG...........................................................................................................................................................................................................................282.000.001.00---1.00------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTGGC..........................................................................................................................................................................................................................312.000.001.001.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATCT.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
...........TTTTTTTTTTTTTTTTCAGACGGGGAC....................................................................................................................................................................................................................271.000.001.00----------------------------------------------------
.......................................................................................................................................................................................................................ACATTGGCCAGGCTGGGTT................191.000.00-------------1.00---------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAATAG.........................................................................................................................................................................................................................321.000.00----1.00------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATTGG.........................................................................................................................................................................................................................311.000.00--------1.00--------------------------------------------
.............................................................................................................................CAGCCTCCGGAGTAGCTGGGACT......................................................................................................2301.001.00-------1.00---------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACCAG.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
.................................................................................................................................................................................................TTAGTAGAGACGTGGTATA......................................191.000.00------------------------------------------------1.00----
............................................................................................................................TCAGCCTCCGGAGTAGCTGGGACTACCAT.................................................................................................291.000.00-1.00---------------------------------------------------
...................................................................................................................................................................................TTGTATGTTTTTTTTTGAT....................................................191.000.00--1.00--------------------------------------------------
......................................................................................................................................GAGTAGCTGGGACTACGGCAA...............................................................................................211.000.00----------------------------------1.00------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGGAC.........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAGGGAG........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTAAA..........................................................................................................................................................................................................................311.000.00------1.00----------------------------------------------
................................................................................................................................................................................................................TTTCAACACATTGGCCAGGTG.....................211.000.00------1.00----------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAAAG..........................................................................................................................................................................................................................311.000.00---------1.00-------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAAAT..........................................................................................................................................................................................................................311.000.00----1.00------------------------------------------------
......TTTTTTTTTTTTTTTTTTTTTCAGACTT........................................................................................................................................................................................................................281.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGCCA..........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATATC.........................................................................................................................................................................................................................311.000.00--------1.00--------------------------------------------
...................................................................................................................................................................................................................................CTGGTCTCGAACTCCTGAAAAAA231.000.00---------------------------------1.00-------------------
............TTTTTTTTTTTTTTTCAGACGGTGTT....................................................................................................................................................................................................................261.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACAAG.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
.........................................................................................................................................................................................................................ATTGGCCAGGCTGGTCTCGGCC...........221.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGATTGT.......................................................................................................................................................................................................................331.000.00--1.00--------------------------------------------------
.................................................................................................................................CTCCGGAGTAGCTGGGTCTG.....................................................................................................201.000.00-------------------------------1.00---------------------
...................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT..........................................................................................................................291.000.00------------------------------------------1.00----------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACAAA.........................................................................................................................................................................................................................311.000.00------1.00----------------------------------------------
....................................................................................................................................CGGAGTAGCTGGGACTACCGT.................................................................................................2101.009.00-----------------------1.00-----------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGCTG.........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAGTTGC........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAGACTC........................................................................................................................................................................................................................331.000.00---------1.00-------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAACG..........................................................................................................................................................................................................................301.000.00--------1.00--------------------------------------------
...................................................................................................................................CCGGAGTAGCTGGGACGGG....................................................................................................1901.001.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATAT.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
.............................................................................................................................CAGCCTCCGGAGTAGCTGGT.........................................................................................................201.000.00-----1.00-----------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGTAG.........................................................................................................................................................................................................................311.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATTCG.........................................................................................................................................................................................................................311.000.00---------1.00-------------------------------------------
...................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG............................................................................................................................271.000.00---------------------------------------1.00-------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGGTT..........................................................................................................................................................................................................................291.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGCC...........................................................................................................................................................................................................................291.000.001.00----------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCAAATT.........................................................................................................................................................................................................................321.000.00----1.00------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATAG.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
........................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA.........................................................................................................................251.000.00-----------1.00-----------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAATCG.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTATG..........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
.........................................................................................................................................TAGCTGGGACTACGGGCCACC............................................................................................211.000.00-1.00---------------------------------------------------
.............TTTTTTTTTTTTTTCAGACGGTGTT....................................................................................................................................................................................................................251.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATACG.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGAT...........................................................................................................................................................................................................................281.000.00----1.00------------------------------------------------
...............TTTTTTTTTTTTCAGACGGAGGCCC..................................................................................................................................................................................................................251.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGCTG..........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
....................................................................................................................................................................................................................................TGGTCTCGAACTCCTGAAAAA.211.000.00------------------------1.00----------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGAAG..........................................................................................................................................................................................................................291.000.001.00----------------------------------------------------
..........TTTTTTTTTTTTTTTTTCAGACCCAC......................................................................................................................................................................................................................261.000.00-1.00---------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAATCT.........................................................................................................................................................................................................................301.000.00--------1.00--------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCATCG..........................................................................................................................................................................................................................291.000.00--1.00--------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGGCG..........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCACAAG.........................................................................................................................................................................................................................301.000.00--1.00--------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTCCG..........................................................................................................................................................................................................................311.000.00----1.00------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAACTG.........................................................................................................................................................................................................................311.000.00--------1.00--------------------------------------------
............................................................................................................................TCAGCCTCCGGAGTAGCTGGGGCG......................................................................................................2401.004.00-1.00---------------------------------------------------
.........................................................................................................................................TAGCTGGGACTACGGGCGCGCCA..........................................................................................231.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAAGG..........................................................................................................................................................................................................................301.000.00--------1.00--------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGTG...........................................................................................................................................................................................................................291.000.00------1.00----------------------------------------------
....TTTTTTTTTTTTTTTTTTTTTTTCAGACGGGAG.....................................................................................................................................................................................................................331.000.00-1.00---------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCGGCT..........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
...................................................................................................................................CCGGAGTAGCTGGGACTATCGG.................................................................................................2201.002.00------------------------------1.00----------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCATTAG.........................................................................................................................................................................................................................301.000.00---------1.00-------------------------------------------
............................................................................................................................TCAGCCTCCGGAGTAGCTGGGAAAA.....................................................................................................251.000.00----------------------1.00------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAACAT.........................................................................................................................................................................................................................301.000.00--1.00--------------------------------------------------
.........................................................................................................................................TAGCTGGGACTACGGGGCG..............................................................................................191.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGCCC..........................................................................................................................................................................................................................291.000.001.00----------------------------------------------------
......................................................................................................................................GAGTAGCTGGGACTACGGGCCCTG............................................................................................241.000.00----------------------------1.00------------------------
...............TTTTTTTTTTTTCAGACGGAGCCCC..................................................................................................................................................................................................................251.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACATC.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
...........................................................................................................CAAGTGATTCTCCTGCCTAAAA.........................................................................................................................221.000.00--------------------------1.00--------------------------
..................................................................................................................................TCCGGAGTAGCTGGGACTA.....................................................................................................1901.001.00-------1.00---------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAACA..........................................................................................................................................................................................................................291.000.00--------1.00--------------------------------------------
...............................................................................................................................GCCTCCGGAGTAGCTGGGACGAA....................................................................................................2301.002.00--------------1.00--------------------------------------
..........................................................................................................................................AGCTGGGACTACGGGCGCGGG...........................................................................................211.000.001.00----------------------------------------------------
..................................................................................................................................TCCGGAGTAGCTGGGACTGCAG..................................................................................................2201.001.00-----1.00-----------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCATAAG.........................................................................................................................................................................................................................321.000.00----1.00------------------------------------------------
.................................................................................................................ATTCTCCTGCCTCAGCCTCCGGTTT................................................................................................................251.000.00--------------------------------------------1.00--------
...............................................CACCCAGGCTGGAGTGCAGTGGCGCAACCG.............................................................................................................................................................................301.000.001.00----------------------------------------------------
.................................................................................................................................................................................TTTTGTATGTTTTTTTTGTTC....................................................211.000.00------------1.00----------------------------------------
..............................................TCACCCAGGCTGGAGTGCAGTGGCGCACCC..............................................................................................................................................................................301.000.001.00----------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTGC...........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
.................................................................................................................................CTCCGGAGTAGCTGGGAC.......................................................................................................1801.001.00-----1.00-----------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCGGAC..........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
............................................................................................................................TCAGCCTCCGGAGTAGCTGG..........................................................................................................2001.001.00-------1.00---------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCGCAG..........................................................................................................................................................................................................................291.000.00-1.00---------------------------------------------------
.............................................................................................................AGTGATTCTCCTGCCTCAGCCTCCGGACC................................................................................................................291.000.001.00----------------------------------------------------
..................................................................................................................................................................................................TAGTAGAGACGTGGTATA......................................181.000.00-------------1.00---------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTAAG..........................................................................................................................................................................................................................311.000.00---------1.00-------------------------------------------
.................................................................................................................................CTCCGGAGTAGCTGGGACTGACG..................................................................................................231.000.00-----------------------------1.00-----------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCATATT.........................................................................................................................................................................................................................301.000.00----1.00------------------------------------------------
...........................................................................................................................................GCTGGGACTACGGGCTAT.............................................................................................181.000.00-------------------1.00---------------------------------
.......................................................................................................................................................................................................................ACATTGGCCAGGCTGGGGTC...............201.000.00-1.00---------------------------------------------------
..............................................................................................................................................GGGACTACGGGCGCGCATC.........................................................................................191.000.00--------------1.00--------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAACAA.........................................................................................................................................................................................................................311.000.00----1.00------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAGGTGG........................................................................................................................................................................................................................321.000.00------1.00----------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCACTA..........................................................................................................................................................................................................................301.000.00---------1.00-------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTCAG..........................................................................................................................................................................................................................311.000.00----1.00------------------------------------------------
........................................................................................................................................GTAGCTGGGACTACGGG.................................................................................................1701.001.00-----1.00-----------------------------------------------
.......TTTTTTTTTTTTTTTTTTTTCAGACTGT.......................................................................................................................................................................................................................281.000.00-1.00---------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCGCAG..........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGAGC..........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCAACG..........................................................................................................................................................................................................................291.000.00----1.00------------------------------------------------
.............................................................................TGGCTCACTGCAACCTCCAGGCCC.....................................................................................................................................................241.000.001.00----------------------------------------------------
..............TTTTTTTTTTTTTCAGACGGAGCCCC..................................................................................................................................................................................................................261.000.001.00----------------------------------------------------
..............................................................................................................................................................................................TTTTTAGTAGAGACGTGGTTT.......................................2101.001.00------------------1.00----------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTTGC..........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATTCT.........................................................................................................................................................................................................................311.000.00--1.00--------------------------------------------------
...............................................................................................................................................................AGACCATGCCCAGCTAGGTG.......................................................................201.000.001.00----------------------------------------------------
.......................................................................................................................................AGTAGCTGGGACTACGGGCCGTC............................................................................................231.000.00-1.00---------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAAGC..........................................................................................................................................................................................................................301.000.00--1.00--------------------------------------------------
................................................................................................................................................................................................................................AGGCTGGTCTCGAACTCCTGAAAAGA261.000.00-----------------------------------------1.00-----------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCTGGT..........................................................................................................................................................................................................................311.000.001.00----------------------------------------------------
.................................................................................................................................................................................................TTAGTAGAGACGTGGTTCACC....................................211.000.00-1.00---------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCACTGG.........................................................................................................................................................................................................................301.000.00---------1.00-------------------------------------------
............................................................................................................................................CTGGGACTACGGGCGGG.............................................................................................171.000.00--------------------1.00--------------------------------
..............................................................................................................................AGCCTCCGGAGTAGCTGGGCTTG.....................................................................................................231.000.00--------------------------------------------------1.00--
..............................................................................................................................................................................................TTTTTAGTAGAGACGTGGTTTGTC....................................2401.001.00-1.00---------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCATCTG.........................................................................................................................................................................................................................301.000.00---------1.00-------------------------------------------
..................................................................................................................................TCCGGAGTAGCTGGGAC.......................................................................................................1701.001.00----------1.00------------------------------------------
...................................................................................................................................CCGGAGTAGCTGGGAC.......................................................................................................1601.001.00-----1.00-----------------------------------------------
.........................................................................................................................................................................................................................ATTGGCCAGGCTGGTGACA..............191.000.001.00----------------------------------------------------
.................................................................................................................................................................ACCATGCCCAGCTAATTTTTGTAAGC...............................................................261.000.001.00----------------------------------------------------
.................................................................................................................................................................................TTTTGTATGTTTTTTTTTGG.....................................................201.000.00------------1.00----------------------------------------
.......................................................................................................................................AGTAGCTGGGACTACGG..................................................................................................1701.001.00------------------1.00----------------------------------
...............................................................................................AGTTCCCGGGTTCAAATGG........................................................................................................................................191.000.00------------1.00----------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCGTCG..........................................................................................................................................................................................................................301.000.00--1.00--------------------------------------------------
..................................................................................................................................TCCGGAGTAGCTGGGACT......................................................................................................1801.001.00---1.00-------------------------------------------------
..............................................TCACCCAGGCTGGAGTGCAGTGGCGCAACCG.............................................................................................................................................................................311.000.001.00----------------------------------------------------
...CTTTTTTTTTTTTTTTTTTTTTTTCATAAA.........................................................................................................................................................................................................................301.000.00----1.00------------------------------------------------
...........................................................................................................................................GCTGGGACTACGGGCTGAT............................................................................................191.000.00--------------------1.00--------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCATTTC.........................................................................................................................................................................................................................321.000.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCAACT..........................................................................................................................................................................................................................301.000.00----1.00------------------------------------------------
.TTCTTTTTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................................................................................................................................301.000.001.00----------------------------------------------------
.............................................................................TGGCTCACTGCAACCTCCAGTTCCCGGG.................................................................................................................................................2821.001.001.00----------------------------------------------------
..TCTTTTTTTTTTTTTTTTTTTTTTTCATAC..........................................................................................................................................................................................................................301.000.00--------1.00--------------------------------------------
.....................................................................................................................TCCTGCCTCAGCCTCCGGAGTAGGGGA..........................................................................................................271.000.001.00----------------------------------------------------
.....................................................................................................................................................................................................TAGAGACGTGGTTTCAAC...................................1830.330.33-------------0.33---------------------------------------
....................................................................................................................................................................................TGTATGTTTTTTTTTAGTAGAG................................................2230.330.33----------------------------------------------------0.33
.......................................................................................................................................AGTAGCTGGGACTACGGGCGCGC............................................................................................2390.110.11-0.11---------------------------------------------------

Antisense strand
GTTCTTTTTTTTTTTTTTTTTTTTTTTCAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCAGTTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACGGGCGCGCGAGACCATGCCCAGCTAATTTTTGTATGTTTTTTTTTAGTAGAGACGTGGTTTCAACACATTGGCCAGGCTGGTCTCGAACTCCTGAAGTCG
...............................................................................((.....))...........(((((((((.(((....((((.((....))....))))..))).))))).)))).................................................................................................
........................................................................73...............................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925PAZD5SRR189785GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
.....................................................GGCTGGAGTGCAGTGGCGCAATGAGC........................................................................................................................................................................... 264.000.002.002.00---------------------------------------------------
.................................................................................................................TCCGGAGGCTGAGGCAGGAGAAT.................................................................................................................. 2303.003.00---1.00-------------2.00-----------------------------------
.................................................................................................................................................................................................................................GGCTGGTCTCGAACTCCTGAAGGCC 253.000.002.001.00---------------------------------------------------
.....................................................GGCTGGAGTGCAGTGGCGCAATGTGC........................................................................................................................................................................... 262.000.002.00----------------------------------------------------
...................................................................................................................TCCGGAGGCTGAGGCAGGAGA.................................................................................................................. 2101.001.00-------1.00---------------------------------------------
.............................................................................................................................................................ATTAGCTGGGCATGGTCTCG......................................................................... 2011.001.00--------------1.00--------------------------------------
...............................CGGAGTCTCACTCTGTGCCC....................................................................................................................................................................................................... 201.000.00-1.00---------------------------------------------------
........................................................................................................................ACTCCGGAGGCTGAGGCA................................................................................................................ 1801.001.00--------------------------------------1.00--------------
...........................................................................................................................................GCGCCCGTAGTCCCAGC.............................................................................................. 1701.001.00-----------1.00-----------------------------------------
....TTTTTTTTTTTTTTTTTTTTTTTCATTTA......................................................................................................................................................................................................................... 291.000.00-------------------------------------------------1.00---
...............................................................................GCTCACTGCAACCTCCAGTTGCG.................................................................................................................................................... 231.000.00-1.00---------------------------------------------------
..............................................................................................................................................................GAGACCATGCCCAGCTAAA......................................................................... 191.000.00-------------------------1.00---------------------------
..............................ACGGAGTCTCACTCTGTCACCCAGAG.................................................................................................................................................................................................. 261.000.00-------------------1.00---------------------------------
..................................................................................................................................................................................................................TCAACACATTGGCCAGGCTGGACT................ 241.000.00---------------1.00-------------------------------------
......................................................................................................................CCTGCCTCAGCCTCCGGACCA............................................................................................................... 211.000.001.00----------------------------------------------------
......................................................................................................................ACTCCGGAGGCTGAGGCAGG................................................................................................................ 2001.001.00---------------------------------------------1.00-------
.....................................................GGCTGGAGTGCAGTGGCGCAATGAAC........................................................................................................................................................................... 261.000.001.00----------------------------------------------------
...................................................................................................................GTCCCAGCTACTCCGGAGGCTGAGGCAGGAGA....................................................................................................... 3201.001.00-------1.00---------------------------------------------
......................TTTTTCAGACGGAGTCTCACTCT............................................................................................................................................................................................................. 231.000.00-----------------------------------1.00-----------------
.....................................................GGCTGGAGTGCAGTGGCGCAATCTTGGGT........................................................................................................................................................................ 291.000.001.00----------------------------------------------------
......................................................................................................................CCTGCCTCAGCCTCCGGAGTAGCTGGGG........................................................................................................ 281.000.00-1.00---------------------------------------------------
......................................................................................................................CCTGCCTCAGCCTCCGGAGTCTAA............................................................................................................ 241.000.00-1.00---------------------------------------------------
...................................................................................................................TCTCCTGCCTCAGCCTCCGGAGTCC.............................................................................................................. 251.000.001.00----------------------------------------------------
................................................................................................................................................................GACCATGCCCAGCTAATTTTTACTT................................................................. 251.000.001.00----------------------------------------------------
........................................................................................................................CCCAGCTACTCCGGAGGCTGAGGCA......................................................................................................... 2501.001.00----------------------------------------1.00------------
...........................................................................CTTGGCTCACTGCAACCTCCACTAG...................................................................................................................................................... 251.000.001.00----------------------------------------------------
..................................................................................................................TTCTCCTGCCTCAGCCTCCGGACCCC.............................................................................................................. 261.000.00-1.00---------------------------------------------------
........................................................................................................................................................................................................................CATTGGCCAGGCTGGTCTCGAAGTA......... 251.000.001.00----------------------------------------------------
................................................................................................................GATTCTCCTGCCTCAGCCTCCGGAGTTCTA............................................................................................................ 301.000.00-------------------------------------------1.00---------
...................................................................................ACTGCAACCTCCAGTCCCC.................................................................................................................................................... 191.000.001.00----------------------------------------------------
........................................................................................................................................................................................................................CATTGGCCAGGCTGGTCTCGAGCT.......... 241.000.00-1.00---------------------------------------------------
....................TTTTTTTCAGACGGAGTCTAGG................................................................................................................................................................................................................ 221.000.00---------------------1.00-------------------------------
....................................................AGGCTGGAGTGCAGTGGCGCAATCTCCGC......................................................................................................................................................................... 291.000.00-1.00---------------------------------------------------
.......................................................................................CAACCTCCAGTTCCCGGAGT............................................................................................................................................... 201.000.00-------------1.00---------------------------------------
...................................................................................................................TCTCCTGCCTCAGCCTCCGGAGTCCT............................................................................................................. 261.000.001.00----------------------------------------------------
...................................................................................................CCCGGGTTCAAGTGATTCTCCTT................................................................................................................................ 231.000.00---1.00-------------------------------------------------
.....................................................GGCTGGAGTGCAGTGGCGCAAGAGC............................................................................................................................................................................ 251.000.00-1.00---------------------------------------------------
......................................................................................................................CCTGCCTCAGCCTCCGGGAT................................................................................................................ 201.000.00---------------------------1.00-------------------------
..................................................................................................................TTCTCCTGCCTCAGCCTCCGGAAA................................................................................................................ 241.000.00------------------------------------1.00----------------
..........................................................................................................................CCCAGCTACTCCGGAGGCTGAGG......................................................................................................... 2301.001.00---1.00-------------------------------------------------
.....................................................GGCTGGAGTGCAGTGGCGCAATGGTC........................................................................................................................................................................... 261.000.001.00----------------------------------------------------
.....................................................GGCTGGAGTGCAGTGGCGCAATGGAC........................................................................................................................................................................... 261.000.001.00----------------------------------------------------
........................................................................................................................CTACTCCGGAGGCTGAGGCA.............................................................................................................. 2001.001.00-------------------------------------1.00---------------
....TTTTTTTTTTTTTTTTTTTTTTTCAGCG.......................................................................................................................................................................................................................... 281.000.00-----------------------------------------------1.00-----
..................................................................................................................TTCTCCTGCCTCAGCCTCCGGAGTACAC............................................................................................................ 281.000.00-1.00---------------------------------------------------
................................GGAGTCTCACTCTGTCACCCAGGTAA................................................................................................................................................................................................ 261.000.00------------1.00----------------------------------------
..............................................................................CCCGGGAACTGGAGGTTGCAGTGAGCC................................................................................................................................................. 2740.250.250.25----------------------------------------------------
.............................................................................................................................................................................................................................ACTTCAGGAGTTCGAGACCAGCCTGGC.. 2760.170.170.17----------------------------------------------------