ID: uc002inz.1_intron_0_0_chr17_46800676_f.3p
GENE: HOXB13-AS1(1)
chr17:46801490-46801739+


(2)
AGO2.ip 		(15)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
LIVER 		(7)
OTHER 		(10)
SKIN 		(1)
UTERUS

Sense strand
CTCCTGTAGCTTAACATAGCCCTTATGTAAAAATAAATATCTGCAGGCGAATATAGGTTTGTAGATTTTGTTGTGATTTAAACACAAATAAGTGAGAGATTTCAATGTGGTCGTCCAGGGATAGGTGGGAGACTAAAATTGGGAAGGGATTCCCAATGAAAGCGTTTAATACAAAACGAAATTAAATATTTTTTGCACAGGTTCCATACAAGTAAATCCGAAAAAAAGTGTGTGTGGGGGGGTCCACACC
.....................................................................................................................(((((..(((.((((.....((((((((....)))))))).....(((((......)))))............)))).)))..))))).............................................
.................................................................................................................114...........................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189782SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR343335SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343336
.........................................................................................................................................................................................ATATTTTTTGCACAGGTTG..............................................1924.000.0021.00---3.00--------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTTTGA................................................................................................................20221.500.50-21.00----------------------------------------------0.50------
.......................................................................................................................GATAGGTGGGAGACTGTGA................................................................................................................1916.000.00---9.00-4.00-----2.00------------------------1.00------------------
.......................................................................................................................GATAGGTGGGAGACTATGA................................................................................................................1911.000.00--1.00-1.00----3.00---1.002.00-----1.00-----1.00----1.00-----------------------
.......................................................................................................................GATAGGTGGGAGACTGTG.................................................................................................................187.000.00---------------2.00---1.00-----1.00---------1.00-1.00---1.00-------------
......................................................................................................................GGATAGGTGGGAGACTGTG.................................................................................................................1926.000.50---1.000.50-2.501.00--0.50----------------------------------0.50---------
........................................................................................................................ATAGGTGGGAGACTATGA................................................................................................................185.000.00----1.00-----------1.00----1.001.00-----1.00--------------------------
........................................................................................................................ATAGGTGGGAGACTATGAA...............................................................................................................193.000.00--------3.00----------------------------------------------
.......................................................................................................................GATAGGTGGGAGACTGAG.................................................................................................................183.000.00--3.00----------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTGTGA................................................................................................................2023.000.50-------0.50----0.50---0.50--0.50-----------------------0.500.50----------
.......................................................................................................................GATAGGTGGGAGACTAAGAA...............................................................................................................203.000.00--2.00---------1.00------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTG...................................................................................................................1722.500.50-------1.00----------0.50---------------------------0.500.50-------
.......................................................................................................................GATAGGTGGGAGACTATGAA...............................................................................................................202.000.00----1.00------------------1.00-------------------------------
......................................................................................................................GGATAGGTGGGAGACTGT..................................................................................................................1822.000.50------0.50----0.50-0.50-----------------------------------0.50-----
......................................................................................................................GGATAGGTGGGAGACTATGA................................................................................................................202.000.00------------------1.00--------------1.00---------------------
........................................................................................................................ATAGGTGGGAGACTAGGAG...............................................................................................................192.000.00--2.00----------------------------------------------------
.......................................................................................................................GATAGGTGGGAGACTGGGA................................................................................................................192.000.00--------------------------------------1.001.00---------------
......................................................................................................................GGATAGGTGGGAGACTATG.................................................................................................................191.000.00----------1.00--------------------------------------------
.........................................................................................................................................................................................ATATTTTTTGCACAGGCTG..............................................191.000.001.00------------------------------------------------------
..............................................................................................................................................GAAGGGATTCCCAATAGCC.........................................................................................191.000.00------------------------1.00------------------------------
.......................................................................................................................GATAGGTGGGAGACTGT..................................................................................................................171.000.00--------------------------------1.00----------------------
.......................................................................................................................GATAGGTGGGAGACTGCG.................................................................................................................181.000.00---------------------------1.00---------------------------
......................................................................................................................GGATAGGTGGGAGACTAT..................................................................................................................181.000.00----------1.00--------------------------------------------
.....................................TATCTGCAGGCGAATATGC..................................................................................................................................................................................................191.000.001.00------------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTAAGA................................................................................................................201.000.00--1.00----------------------------------------------------
..........................................................................................................................................................................................TATTTTTTGCACAGGTTG..............................................181.000.001.00------------------------------------------------------
.....................................TATCTGCAGGCGAATATTG..................................................................................................................................................................................................191.000.001.00------------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTAAGAA...............................................................................................................211.000.00----1.00--------------------------------------------------
........................................................................................................................ATAGGTGGGAGACTAAGA................................................................................................................181.000.00--1.00----------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTAGG.................................................................................................................191.000.00--1.00----------------------------------------------------
.......................................................................................................................GATAGGTGGGAGACTGG..................................................................................................................171.000.00-----------------1.00-------------------------------------
......................................................................................................................GGATAGGTGGGAGACTTGGA................................................................................................................2021.000.50-------1.00-----------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTATGAA...............................................................................................................211.000.00------------1.00------------------------------------------
...............................................................................................................................................................................................................................AAAAGTGTGTGTGGGTGC.........181.000.00-----------------------------1.00-------------------------
.......................................................................................................................GATAGGTGGGAGACTAGGA................................................................................................................191.000.00--1.00----------------------------------------------------
.......................................................................................................................GATAGGTGGGAGACTGGCC................................................................................................................191.000.00----------------------------------------1.00--------------
.......................................................................................................................GATAGGTGGGAGACTGAGA................................................................................................................191.000.00--1.00----------------------------------------------------
........................................................................................................................ATAGGTGGGAGACTAAGAAA..............................................................................................................201.000.00--1.00----------------------------------------------------
.......................................................................................................................GATAGGTGGGAGACTAAGAAG..............................................................................................................211.000.00--1.00----------------------------------------------------
......................................................................................................................GGATAGGTGGGAGAC.....................................................................................................................1560.670.67----------------0.17-----------------------------------0.33-0.17
......................................................................................................................GGATAGGTGGGAGACTGA..................................................................................................................1820.500.50-----0.50-------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTGAG.................................................................................................................1920.500.50-----------------0.50-------------------------------------
......................................................................................................................GGATAGGTGGGAGACT....................................................................................................................1620.500.50-------------0.50-----------------------------------------
......................................................................................................................GGATAGGTGGGAGACTGC..................................................................................................................1820.500.50------0.50------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTGAGA................................................................................................................2020.500.50--0.50----------------------------------------------------
......................................................................................................................GGATAGGTGGGAGACTT...................................................................................................................1720.500.50--------------------0.50----------------------------------
......................................................................................................................GGATAGGTGGGAGACATT..................................................................................................................1860.170.67-----------------------------------------------------0.17-
......................................................................................................................GGATAGGTGGGAGACCGCG.................................................................................................................1960.170.67--------------------------------------------------0.17----
......................................................................................................................GGATAGGTGGGAGACGTTG.................................................................................................................1960.170.67--------------------------------------------------0.17----

Antisense strand
CTCCTGTAGCTTAACATAGCCCTTATGTAAAAATAAATATCTGCAGGCGAATATAGGTTTGTAGATTTTGTTGTGATTTAAACACAAATAAGTGAGAGATTTCAATGTGGTCGTCCAGGGATAGGTGGGAGACTAAAATTGGGAAGGGATTCCCAATGAAAGCGTTTAATACAAAACGAAATTAAATATTTTTTGCACAGGTTCCATACAAGTAAATCCGAAAAAAAGTGTGTGTGGGGGGGTCCACACC
.....................................................................................................................(((((..(((.((((.....((((((((....)))))))).....(((((......)))))............)))).)))..))))).............................................
.................................................................................................................114...........................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189782SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR343335SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343334SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343336
...............................................................................................................CGTCCAGGGATAGGTGGGAGATA.................................................................................................................... 231.000.00------------------------------1.00------------------------
..........................................................................................................................................................................................................................CGAAAAAAAGTGTGTT................ 161.000.00------------------------------------------1.00------------
...................................................................................................................CAGGGATAGGTGGGAGC...................................................................................................................... 171.000.00----------------------------------1.00--------------------
..................................................................................................................................................................................................................................GGACCCCCCCACACACACT..... 1930.330.33---------------------------------------------------0.33---