ID: uc002imq.1_intron_0_0_chr17_46048519_f
GENE: CDK5RAP3(1)
chr17:46048469-46048777+


(27)
B-CELL
(1)
BRAIN
(17)
BREAST
(36)
CELL-LINE
(12)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(1)
HELA
(8)
LIVER
(2)
OTHER
(1)
RRP40.ip
(24)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
GGGGCGGGCCACAGTCTCCAGCCTGAAGCGGAAGTGGAGGAAAGATGGAGGTGTGGGGACAGGAGCTGGGTGTGCTGGGGACTGGCCGCGGACCCCTAACCTGTGTCTCCGGTCTCCCTCCGGAAGCGGCTCAACCCAGCCCATCGCTCTGGCCCCGTTCTGGCCCTGCAGGGTGGTGGTTGGGACGTTGAAATGAGCGCGCGAGTGGTACGTCCTCTCTCCGCGCTCACGCCCCCCTCCTCACCGTGTTTCCCGCCAGGACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGGTAG
......................................................((((...(((((..((((.((((((....((((((.(((...........)))(((((.......))))).))))))...)))))).)))))))))..)))).(((..(((((((...)))).)))..)))............................................................................................................................
..................................................51....................................................................................................................................185..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577739(Rovira)
total RNA. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR038860(GSM458543)
MM426. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040030(GSM532915)
G013N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040012(GSM532897)
G648N. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
............................CGGAAGTGGAGGAAAGATGG.....................................................................................................................................................................................................................................................................20117.0017.00-2.00-----1.00------1.00----4.00-------3.00-------1.00-1.00----------------1.00------------1.00-----------------------------1.00-------1.00------------------------------------
......................................................GGGGACAGGAGCTGGGTG.............................................................................................................................................................................................................................................18214.0014.00-1.504.50----2.00-----0.50---------0.50-1.00------1.00------0.50---------------------0.500.50----------------------------------------------------------------------0.500.50---0.50---
..................................................................................................................................................................GCCCTGCAGGGTGGTGGTTGGGA............................................................................................................................23110.0010.00-----10.00----------------------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGATGG.....................................................................................................................................................................................................................................................................2119.009.00-1.00-----1.00----1.00--------------------1.00------2.00-------------------------------1.00-----------------------1.00---------------------------------1.00-----------
.................................GTGGAGGAAAGATGGAGGTG................................................................................................................................................................................................................................................................2019.009.00-5.00-1.00-------1.00-----------1.00-------------------------1.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................TGGTTGGGACGTTGAAATG..................................................................................................................1919.009.00----9.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................................AAGATGGAGGTGTGGGGA..........................................................................................................................................................................................................................................................1827.007.00--4.00---0.50--0.50-------------------------1.00------------------------------------------------------------------------------------------------0.50----0.50----
............................CGGAAGTGGAGGAAAGAT.......................................................................................................................................................................................................................................................................1817.007.00---1.00--------1.00-------3.00---------1.00------------------------------------------------------------------------------------------1.00--------------------
............................CGGAAGTGGAGGAAAGATGGA....................................................................................................................................................................................................................................................................2116.006.00--------------------------1.00---1.00----------------------2.00-------------------1.001.00-------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGATGGA....................................................................................................................................................................................................................................................................2216.006.00--------3.00---------1.00---------------------------------------------------------1.00-----------------------------------1.00-----------------------------
............................................................AGGAGCTGGGTGTGCTGGG......................................................................................................................................................................................................................................1915.005.00-1.001.00-----------------------------------------------------------------------------------------1.00-----1.00-----1.00-------------------------------------
...........................GCGGAAGTGGAGGAAAGA........................................................................................................................................................................................................................................................................1815.005.00---1.00--------1.00---------------------------------------------------------1.00-----------1.00---------------------------------1.00-------------------------
.....................................AGGAAAGATGGAGGTGTG..............................................................................................................................................................................................................................................................1815.005.00--------1.00------1.00-1.00--------------------------1.00-------------------1.00-----------------------------------------------------------------------------
................................................AGGTGTGGGGACAGGAGCTGG................................................................................................................................................................................................................................................2114.004.00-------------------------2.00------2.00-------------------------------------------------------------------------------------------------------------
................................................AGGTGTGGGGACAGGAGCT..................................................................................................................................................................................................................................................1914.004.00---3.00-----------------------------------------------------------------------------------1.00------------------------------------------------------
.............................................TGGAGGTGTGGGGACAGG......................................................................................................................................................................................................................................................1814.004.001.00-----3.00---------------------------------------------------------------------------------------------------------------------------------------
..........................AGCGGAAGTGGAGGAAAGATG......................................................................................................................................................................................................................................................................2114.004.00------------------------------------------------1.00------1.00---------------------------------1.00-----------------------------------1.00----------------
................................................................GCTGGGTGTGCTGGGGA....................................................................................................................................................................................................................................1733.003.001.00---1.67------------------------------------------------------------------------------------------------------------------------------0.33----------
........................................AAAGATGGAGGTGTGGGGA..........................................................................................................................................................................................................................................................1913.003.00--1.00------1.00--------------------------------------------------------------------------------------------------------1.00---------------------------
.......................TGAAGCGGAAGTGGAGGA............................................................................................................................................................................................................................................................................1813.003.00---1.00----------1.00-------------------1.00-----------------------------------------------------------------------------------------------------------
.................................GTGGAGGAAAGATGGAGGTGTGGGGA..........................................................................................................................................................................................................................................................2613.003.003.00---------------------------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGAT.......................................................................................................................................................................................................................................................................1913.003.00---1.00------------------------------------------------1.00------------------------1.00----------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................2213.003.00---1.00---------------------------2.00--------------------------------------------------------------------------------------------------------------
................TCCAGCCTGAAGCGGAAGTGGAGGAA...........................................................................................................................................................................................................................................................................2613.003.00------------------------------------3.00---------------------------------------------------------------------------------------------------------
......................................................GGGGACAGGAGCTGGGTGTG...........................................................................................................................................................................................................................................2013.003.00--------1.00----------------------------------------------------------------------1.00----------------------------------------1.00---------------------
..............................................................................................................................................................................................AAATGAGCGCGCGAGTGGTA...................................................................................................2013.003.00----------------------------3.00-----------------------------------------------------------------------------------------------------------------
..................................................GTGTGGGGACAGGAGCTGGG...............................................................................................................................................................................................................................................2013.003.003.00---------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................GTGCTGGGGACTGGCCGC............................................................................................................................................................................................................................1813.003.00------2.00-------------------------------------------------1.00-------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGGAGG..................................................................................................................................................................................................................................................................2313.003.00-----------1.00--------------------------1.00------------------1.00------------------------------------------------------------------------------------
..........................AGCGGAAGTGGAGGAAAGA........................................................................................................................................................................................................................................................................1913.003.003.00---------------------------------------------------------------------------------------------------------------------------------------------
......................CTGAAGCGGAAGTGGAGGAA...........................................................................................................................................................................................................................................................................2012.002.00-------2.00--------------------------------------------------------------------------------------------------------------------------------------
.....................CCTGAAGCGGAAGTGGAGGA............................................................................................................................................................................................................................................................................2012.002.00----------2.00-----------------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGAA....................................................................................................................................................................................................................................................................2112.002.00-------------------------------------------------------------------------------------1.00----------------------------------------1.00---------------
............................CGGAAGTGGAGGAAAGATG......................................................................................................................................................................................................................................................................1912.002.00---------------------------------------------1.00------------------------------------------------------------------------1.00-----------------------
.............................................................................................CCCTAACCTGTGTCTCCGG.....................................................................................................................................................................................................1912.002.00-2.00--------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................GTGCTGGGGACTGGCCGCG...........................................................................................................................................................................................................................1912.002.00---------------------------------------------------2.00------------------------------------------------------------------------------------------
..............................GAAGTGGAGGAAAGATGGAGGTGTGG.............................................................................................................................................................................................................................................................2612.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------
.........................................AAGATGGAGGTGTGGGGAC.........................................................................................................................................................................................................................................................1912.002.00--2.00-------------------------------------------------------------------------------------------------------------------------------------------
...........................................GATGGAGGTGTGGGGACAGG......................................................................................................................................................................................................................................................2012.002.001.001.00--------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GAGCTGGGTGTGCTGGGGACTGG................................................................................................................................................................................................................................2312.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------
....................GCCTGAAGCGGAAGTGGAGGA............................................................................................................................................................................................................................................................................2112.002.00---1.00-------------------------------------------------------------------------------------------1.00----------------------------------------------
......................................................GGGGACAGGAGCTGGGTGTGC..........................................................................................................................................................................................................................................2112.002.00-----------------------1.00-----------------------------------------1.00----------------------------------------------------------------------------
.......................TGAAGCGGAAGTGGAGGAAAGATGGA....................................................................................................................................................................................................................................................................2612.002.00---------------1.00-----------------------------------------------------------------------------------------------1.00------------------------------
............................................ATGGAGGTGTGGGGACAGGA.....................................................................................................................................................................................................................................................2012.002.00---------1.00------------------------------------------------------------------------------------------------------------------1.00-----------------
...........................GCGGAAGTGGAGGAAAGATG......................................................................................................................................................................................................................................................................2012.002.00-----------------------------------1.00-------------------------------------------------------1.00--------------------------------------------------
...............................AAGTGGAGGAAAGATGGAGG..................................................................................................................................................................................................................................................................2022.002.001.00-----------0.50--------------------------------------------------0.50------------------------------------------------------------------------------
.................................................................CTGGGTGTGCTGGGGACTGG................................................................................................................................................................................................................................2012.002.00------------------------1.00---------------------------1.00-----------------------------------------------------------------------------------------
..........................................................ACAGGAGCTGGGTGTGCTGG.......................................................................................................................................................................................................................................2012.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------
..........................AGCGGAAGTGGAGGAAAGATGGA....................................................................................................................................................................................................................................................................2312.002.00---------1.00---------------------------------------------------------------------------------------------------1.00--------------------------------
...........................GCGGAAGTGGAGGAAAGATGGAGG..................................................................................................................................................................................................................................................................2412.002.00--------------1.00-------------------1.00-----------------------------------------------------------------------------------------------------------
.........................AAGCGGAAGTGGAGGAAAGATGG.....................................................................................................................................................................................................................................................................2312.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTTGAAATGAGCGCGCGAGTGGTACGT................................................................................................2712.002.00------------------------------------------2.00---------------------------------------------------------------------------------------------------
........................................AAAGATGGAGGTGTGGGGAC.........................................................................................................................................................................................................................................................2012.002.00--1.00----------1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGACAGGAGCTGGGTGTGCTGG.......................................................................................................................................................................................................................................2412.002.00-1.00------1.00-------------------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................2312.002.00----------------1.00-----------------------------------------------------------------------1.00-----------------------------------------------------
.................................GTGGAGGAAAGATGGAGG..................................................................................................................................................................................................................................................................1821.501.50-1.00----------0.50---------------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGATTG.....................................................................................................................................................................................................................................................................2111.003.00-1.00--------------------------------------------------------------------------------------------------------------------------------------------
.........................AAGCGGAAGTGGAGGAAAGA........................................................................................................................................................................................................................................................................2011.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------------
..........................AGCGGAAGTGGAGGAAAGAT.......................................................................................................................................................................................................................................................................2011.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................TCTGGCCCTGCAGGGTGGTG...................................................................................................................................2011.001.00--------------------------------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................TGCAGGGTGGTGGTTGGGACG..........................................................................................................................2111.001.00----------------------------------------------------------------------------------------------1.00-----------------------------------------------
...........................GCGGAAGTGGAGGAAAGTTC......................................................................................................................................................................................................................................................................201.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................GGGACTGGCCGCGGACCCCTAACC................................................................................................................................................................................................................2411.001.00----------1.00-----------------------------------------------------------------------------------------------------------------------------------
...................................GGAGGAAAGATGGAGGTG................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------1.00----------------------------------------
..................................TGGAGGAAAGATGGAGGT.................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------------------1.00---------------------------------
............................................................AGGAGCTGGGTGTGCTGG.......................................................................................................................................................................................................................................1821.001.00-------0.50---------------------------------------------------------------------------------------------------------------------------0.50----------
...................AGCCTGAAGCGGAAGTGG................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------------
.................................................................CTGGGTGTGCTGGGGAC...................................................................................................................................................................................................................................1711.001.00------1.00---------------------------------------------------------------------------------------------------------------------------------------
.........................AAGCGGAAGTGGAGGAAAG.........................................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------------------1.00------------------------------------------
........................................AAAGATGGAGGTGTGGGGACAGG......................................................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------1.00----------------------------
........................GAAGCGGAAGTGGAGGAAA..........................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------1.00-------------------------------------------------------------
............................................................................GGGGACTGGCCGCGGACCC......................................................................................................................................................................................................................1911.001.00------------1.00---------------------------------------------------------------------------------------------------------------------------------
.................................GTGGAGGAAAGATGGAGGT.................................................................................................................................................................................................................................................................1911.001.00---------------------1.00------------------------------------------------------------------------------------------------------------------------
..........................................................................CTGGGGACTGGCCGCGGACCCCT....................................................................................................................................................................................................................2311.001.00------------------------------------------------1.00---------------------------------------------------------------------------------------------
........................GAAGCGGAAGTGGAGGAA...........................................................................................................................................................................................................................................................................1811.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------------------
................................AGTGGAGGAAAGATGGAGGTGTGGGGACA........................................................................................................................................................................................................................................................2911.001.00---------------------------------------------------------------------------------------------------------------------------------1.00------------
.................................................................................................................................................................................GGTTGGGACGTTGAAATGAGCGCGCGAGTGGTAC..................................................................................................3411.001.00--------------------------1.00-------------------------------------------------------------------------------------------------------------------
....................GCCTGAAGCGGAAGTGGAGGAA...........................................................................................................................................................................................................................................................................2211.001.00----------1.00-----------------------------------------------------------------------------------------------------------------------------------
.....................................AGGAAAGATGGAGGTGTGGGGA..........................................................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------1.00---------------------------------------------------------
..........................AGCGGAAGTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................2411.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGATAGAG...................................................................................................................................................................................................................................................................2311.003.00----------------1.00-----------------------------------------------------------------------------------------------------------------------------
..................................TGGAGGAAAGATGGAGGTG................................................................................................................................................................................................................................................................1911.001.00---------------------------------1.00------------------------------------------------------------------------------------------------------------
....................................GAGGAAAGATGGAGGTGTGG.............................................................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATTGAG...................................................................................................................................................................................................................................................................2211.007.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ATCGCTCTGGCCCCGTTCTGGCC................................................................................................................................................2311.001.00---------------1.00------------------------------------------------------------------------------------------------------------------------------
..........................................AGATGGAGGTGTGGGGACAA.......................................................................................................................................................................................................................................................201.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................CCCATCGACATCCAGACCAGCAAGCTGCA......291.000.00------------------------------------------------------------------------------1.00---------------------------------------------------------------
...........................................................................TGGGGACTGGCCGCGGACCC......................................................................................................................................................................................................................2011.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................AGGAAAGATGGAGGTGTGGGG...........................................................................................................................................................................................................................................................2111.001.00---------------------1.00------------------------------------------------------------------------------------------------------------------------
................................................................GCTGGGTGTGCTGGGGACTGG................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------------------1.00-------------------------------
...................AGCCTGAAGCGGAAGTGGAGGAAA..........................................................................................................................................................................................................................................................................2411.001.00-----------------------------------------------------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................................................................................CTCCTCACCGTGTTTCCCGCCAG..................................................2311.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGGAGGTG................................................................................................................................................................................................................................................................2511.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------------------
.................................................GGTGTGGGGACAGGAGCTGGGTGTG...........................................................................................................................................................................................................................................2511.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAAAGAA.......................................................................................................................................................................................................................................................................1911.005.00---------------------------------------------------------------------1.00------------------------------------------------------------------------
................................................................................ACTGGCCGCGGACCCCTAACC................................................................................................................................................................................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................GTGTGCTGGGGACTGGCCG.............................................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------------------------1.00---------------------------------------
........................................AAAGATGGAGGTGTGGGGACAG.......................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TCACGCCCCCCTCCTATCG................................................................191.000.00-------------------------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................GGGTGTGCTGGGGACTGGCCG.............................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------1.00---------------------------------------------------------------------------
....................................................................GGTGTGCTGGGGACTGGCCGCGG..........................................................................................................................................................................................................................2311.001.00---------------1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................GCACGTGCCCATCGACATCCAGACCAGC..............2811.001.00--------------------------------------------------------------------------------------1.00-------------------------------------------------------
..............................GAAGTGGAGGAAAGATGGAGGTGTGGG............................................................................................................................................................................................................................................................2711.001.00------------------------------------------------------1.00---------------------------------------------------------------------------------------
...........................GCGGAAGTGGAGGAATTGG.......................................................................................................................................................................................................................................................................191.000.00---------------------------------------------1.00------------------------------------------------------------------------------------------------
.......................................GAAAGATGGAGGTGTGGGGAA.........................................................................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00---------------------------------------------------
...............................AAGTGGAGGAAAGATGGAGGT.................................................................................................................................................................................................................................................................2111.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------------------
....................GCCTGAAGCGGAAGTGGAGGAAA..........................................................................................................................................................................................................................................................................2311.001.00--------------------------------------1.00-------------------------------------------------------------------------------------------------------
...............................AAGTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................1921.001.00----------------------------------------------1.00-----------------------------------------------------------------------------------------------
.........................................AAGATGGAGGTGTGGGGACAGGA.....................................................................................................................................................................................................................................................2311.001.00---------1.00------------------------------------------------------------------------------------------------------------------------------------
.......................................................................GTGCTGGGGACTGGCCGCGGC.........................................................................................................................................................................................................................211.000.00------------------------------------------------------------1.00---------------------------------------------------------------------------------
............................................................................GGGGACTGGCCGCGGACCCCTA...................................................................................................................................................................................................................2211.001.00----------------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................................AAGATGGAGGTGTGGGGACAGGAGCCG.................................................................................................................................................................................................................................................271.000.00----------------------------------------------------------------------------------------------------1.00-----------------------------------------
.....................................AGGAAAGATGGAGGTGTGG.............................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------1.00------------------------------------------------------------------------------
....................................................GTGGGGACAGGAGCTGGGT..............................................................................................................................................................................................................................................1911.001.001.00---------------------------------------------------------------------------------------------------------------------------------------------
.............GTCTCCAGCCTGAAGCGGAAGTGGAGGAAAGA........................................................................................................................................................................................................................................................................3211.001.00-----------------------------------------------------------------------1.00----------------------------------------------------------------------
.......................................GAAAGATGGAGGTGTGGGGACTGG......................................................................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------------------------------------------1.00------------------------
..........................................AGATGGAGGTGTGGGGACAGT......................................................................................................................................................................................................................................................211.000.00----------------1.00-----------------------------------------------------------------------------------------------------------------------------
..............................GAAGTGGAGGAAAGATGGAGG..................................................................................................................................................................................................................................................................2121.001.00--------------0.50-------------------------------------------------------------------------------------------------------------------------0.50-----
.....................................AGGAAAGATGGAGGTGTGGG............................................................................................................................................................................................................................................................2011.001.00---------------------1.00------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................GTGGTGGTTGGGACGTCT.......................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------------------1.00--------------------------
.......................TGAAGCGGAAGTGGAGGAAA..........................................................................................................................................................................................................................................................................2011.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGGAGGTGTGGGGA..........................................................................................................................................................................................................................................................3111.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------------------
............................................ATGGAGGTGTGGGGACAGGAG....................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------------------1.00----------------------------------
..........................AGCGGAAGTGGAGGAAAGATGG.....................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------1.00------------------------------------------------------------------
.............................................................................................................................................................................................................................................................CGCCAGGACCATCAGCACGTGCCCA...............................2511.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------------------
.........................AAGCGGAAGTGGAGGAAAGAT.......................................................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------------------
..................................................................................TGGCCGCGGACCCCTAACC................................................................................................................................................................................................................1911.001.001.00---------------------------------------------------------------------------------------------------------------------------------------------
...................AGCCTGAAGCGGAAGTGGAG..............................................................................................................................................................................................................................................................................2011.001.00---------------------------------------1.00------------------------------------------------------------------------------------------------------
....................................GAGGAAAGATGGAGGTGTGGGGACAGGA.....................................................................................................................................................................................................................................................2811.001.00------------------------1.00---------------------------------------------------------------------------------------------------------------------
.................................................................CTGGGTGTGCTGGGGACTCAG...............................................................................................................................................................................................................................211.000.00-------------------------------------------1.00--------------------------------------------------------------------------------------------------
............................................................AGGAGCTGGGTGTGCTGGGGA....................................................................................................................................................................................................................................2111.001.00------------------------------1.00---------------------------------------------------------------------------------------------------------------
............................................ATGGAGGTGTGGGGACAGGAGCTGG................................................................................................................................................................................................................................................2511.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------
..........................................................ACAGGAGCTGGGTGTGCTGGGGA....................................................................................................................................................................................................................................2311.001.00--------------------------1.00-------------------------------------------------------------------------------------------------------------------
..................................................................TGGGTGTGCTGGGGACTG.................................................................................................................................................................................................................................1811.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................TGGAGGTGTGGGGACAGGAGCTGG................................................................................................................................................................................................................................................2411.001.00--------------------------------------1.00-------------------------------------------------------------------------------------------------------
..............................GAAGTGGAGGAAAGATGGAGGTG................................................................................................................................................................................................................................................................2311.001.00------------------------1.00---------------------------------------------------------------------------------------------------------------------
..................................TGGAGGAAAGATGGAGGTGTGGG............................................................................................................................................................................................................................................................2311.001.001.00---------------------------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAGATGGT....................................................................................................................................................................................................................................................................2111.0017.00--------------------------------------------------------1.00-------------------------------------------------------------------------------------
.................................GTGGAGGAAAGATGGAGGTGTGGGG...........................................................................................................................................................................................................................................................2511.001.00-------------1.00--------------------------------------------------------------------------------------------------------------------------------
..........................................AGATGGAGGTGTGGGGACAGGAGCTGGGCG.............................................................................................................................................................................................................................................301.000.00-------------------------------------------------------------------------------------------------------1.00--------------------------------------
...........................................................CAGGAGCTGGGTGTGCTGGGGA....................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------------------------1.00----------------------
............................................................................................................................................................................GTGGTGGTTGGGACGTTGAAATGAGCGC.............................................................................................................2811.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------------------
.......................................................GGGACAGGAGCTGGGTGTGCTGGGGAC...................................................................................................................................................................................................................................2711.001.00------------------1.00---------------------------------------------------------------------------------------------------------------------------
.........................................AAGATGGAGGTGTGGGGACAGG......................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------------1.00------------------------------------------------------------------------------------
........................................................................TGCTGGGGACTGGCCG.............................................................................................................................................................................................................................1611.001.00----------------------------------------------------------------------------------------------------------1.00-----------------------------------
..............................GAAGTGGAGGAAAGATGGAGGTGTG..............................................................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------------------
................................................................GCTGGGTGTGCTGGGGACTGGCCG.............................................................................................................................................................................................................................2411.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------------
......................CTGAAGCGGAAGTGGACTG............................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................TCTGGCCCTGCAGGGTGGTGGT.................................................................................................................................2211.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................TGGAGGTGTGGGGACAGGA.....................................................................................................................................................................................................................................................1911.001.00------------------1.00---------------------------------------------------------------------------------------------------------------------------
.......................................................GGGACAGGAGCTGGGTGTGCTGGGGACTG.................................................................................................................................................................................................................................2911.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------------------
....................GCCTGAAGCGGAAGTGGAGGGA...........................................................................................................................................................................................................................................................................221.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------------------
...........................................GATGGAGGTGTGGGGACAGGA.....................................................................................................................................................................................................................................................2111.001.001.00---------------------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGACAGGAGCTGGGTGTGCTG........................................................................................................................................................................................................................................2311.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................CCGGTCTCCCTCCGGGA........................................................................................................................................................................................171.000.00--------------------------------------------------1.00-------------------------------------------------------------------------------------------
....................GCCTGAAGCGGAAGTGGAG..............................................................................................................................................................................................................................................................................1911.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................TGTGTCTCCGGTCTCC................................................................................................................................................................................................1611.001.00---------------------------------------------------------------------------------1.00------------------------------------------------------------
.......................................GAAAGATGGAGGTGTGGGGAC.........................................................................................................................................................................................................................................................2111.001.00---------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................................TGGGTGTGCTGGGGACTT.................................................................................................................................................................................................................................181.000.00--------------------------------------------------------------------------------------------------------------------------1.00-------------------
..................................................GTGTGGGGACAGGAGCTGGGT..............................................................................................................................................................................................................................................2111.001.00---------------------------------------1.00------------------------------------------------------------------------------------------------------
................................AGTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................1821.001.00---0.50-----------------------------------------------------------------------------------------------------------------------------------0.50------
......................................................GGGGACAGGAGCTGG................................................................................................................................................................................................................................................1501.001.00------------------1.00---------------------------------------------------------------------------------------------------------------------------
....................................................GTGGGGACAGGAGCTGG................................................................................................................................................................................................................................................1740.750.75----0.75-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................TGGGGACAGGAGCTGGGT..............................................................................................................................................................................................................................................1830.670.67------------------------------------------------------------0.67---------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TCGACATCCAGACCAGCAAGCTGCT......2520.500.50----------------------0.50-----------------------------------------------------------------------------------------------------------------------
........................................................GGACAGGAGCTGGGTGTG...........................................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------0.50-----------------------------------------------------------------------------
.......................................................GGGACAGGAGCTGGGTGTG...........................................................................................................................................................................................................................................1920.500.50---0.50------------------------------------------------------------------------------------------------------------------------------------------
...............................................GAGGTGTGGGGACAGGAG....................................................................................................................................................................................................................................................1820.500.500.50---------------------------------------------------------------------------------------------------------------------------------------------
.............................GGAAGTGGAGGAAAGATG......................................................................................................................................................................................................................................................................1820.500.50---0.50------------------------------------------------------------------------------------------------------------------------------------------
...............................AAGTGGAGGAAAGATGG.....................................................................................................................................................................................................................................................................1750.400.40-----------------------------------------------------------------0.40----------------------------------------------------------------------------
.......................................GAAAGATGGAGGTGTGG.............................................................................................................................................................................................................................................................1750.400.400.40---------------------------------------------------------------------------------------------------------------------------------------------
........................................AAAGATGGAGGTGTGGG............................................................................................................................................................................................................................................................1750.400.40-------------------------------------------------------------------------------------------------------------------------------------------0.40--
.................................GTGGAGGAAAGATGGAG...................................................................................................................................................................................................................................................................1730.330.33---------------------0.33------------------------------------------------------------------------------------------------------------------------
........................................AAAGATGGAGGTGTGG.............................................................................................................................................................................................................................................................1670.290.29------0.14-------------------------------------------------------------------------------------------------------------------------------------0.14-
................................AGTGGAGGAAAGATGGA....................................................................................................................................................................................................................................................................1740.250.25---------------------0.25------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAAG.........................................................................................................................................................................................................................................................................1670.140.14---------------------------------------------------------------------------------------------------------------------------------------------0.14
...............................AAGTGGAGGAAAGATG......................................................................................................................................................................................................................................................................1670.140.14---------------------------------------0.14------------------------------------------------------------------------------------------------------
...............................AAGTGGAGGAAAGATGTACC..................................................................................................................................................................................................................................................................2070.140.14---------------0.14------------------------------------------------------------------------------------------------------------------------------
............................CGGAAGTGGAGGAAA..........................................................................................................................................................................................................................................................................1590.110.11------------------------0.11---------------------------------------------------------------------------------------------------------------------

Antisense strand
GGGGCGGGCCACAGTCTCCAGCCTGAAGCGGAAGTGGAGGAAAGATGGAGGTGTGGGGACAGGAGCTGGGTGTGCTGGGGACTGGCCGCGGACCCCTAACCTGTGTCTCCGGTCTCCCTCCGGAAGCGGCTCAACCCAGCCCATCGCTCTGGCCCCGTTCTGGCCCTGCAGGGTGGTGGTTGGGACGTTGAAATGAGCGCGCGAGTGGTACGTCCTCTCTCCGCGCTCACGCCCCCCTCCTCACCGTGTTTCCCGCCAGGACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCGGTAG
......................................................((((...(((((..((((.((((((....((((((.(((...........)))(((((.......))))).))))))...)))))).)))))))))..)))).(((..(((((((...)))).)))..)))............................................................................................................................
..................................................51....................................................................................................................................185..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577739(Rovira)
total RNA. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR038860(GSM458543)
MM426. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040024(GSM532909)
G613N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040030(GSM532915)
G013N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR040012(GSM532897)
G648N. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
.............................................................................................................................TGGGCTGGGTTGAGCCGC...................................................................................................................................................................... 1813.003.00------3.00---------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCCTCCTCACCGGC............................................................. 172.000.00----------------------------------------------------------2.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCCTCCTCACCGGG............................................................. 172.000.00----------------------------------------------1.00--------------------------------------------------------------------------------1.00--------------
................................................................GCTGGGTGTGCTGGGGAAGAA................................................................................................................................................................................................................................ 2131.000.00-----------------------------1.00----------------------------------------------------------------------------------------------------------------
..........ACAGTCTCCAGCCTGAATAG....................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------1.00----------------------------------------------------------------------------------------------------------------
.................................................................................................................................CTCAACCCAGCCCATAGGG................................................................................................................................................................. 191.000.00-------------------------------------------------------------1.00--------------------------------------------------------------------------------
..........ACAGTCTCCAGCCTGAAGTT....................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------------------------1.00----------------------------------------------------------------------------------------------
.......GCCACAGTCTCCAGCTAC............................................................................................................................................................................................................................................................................................ 181.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-------------
..............................................................................................................................................................................................................................................CTGGCGGGAAACACGGTGAGG.................................................. 2111.001.00---------------------------------------------------------------------------------------------------------------------------1.00------------------
............................................................................................................................................................................................................................CCGCGCTCACGCCCCCCGAG..................................................................... 201.000.00-----------------------------1.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCCTCCTCACCGGCA............................................................ 181.000.00-------------------------------------------------1.00--------------------------------------------------------------------------------------------
................................................................................................................................GCTCAACCCAGCCCATGGGA................................................................................................................................................................. 201.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................AGCGATGGGCTGGGTTG................................................................................................................................................................. 1711.001.00---------------------------------1.00------------------------------------------------------------------------------------------------------------