ID: uc002ign.2_intron_3_0_chr17_42398100_r
GENE: SLC25A39(8)
chr17:42398050-42398475-


(3)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(3)
BREAST 		(25)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(10)
SKIN 		(1)
XRN.ip

Sense strand
ACTGTGGCTGGGCTGGGGCCCCACTGCCCTTCGAGATGTGCCCTTCTCAGGTAGGCACCCAAGCTGCAGGGGGTGGGTGAGGGAACCCTGGGGTGATGCACAAAGGGTCTACAGCCAAGTCCCAGCTTTGTGACTAGTGACCATGAAGTTACTTAGCTTTTCTGAGCCATGGGTTTCTCATCTGTGAAGTGGGCCTAGCAGGTAGAGTATTTGCCCAGGCGGTCAGGAGATTAATTCCTACAGAGTGCCTGCTTCTGAGCCTGCATGTAGCAGACAAGACTCACAGCTGGGAGGGAGTGGTGGCAGTGAAAGGTGGACGGTCTGGGGCCACTTCCTTGCCCTTCCCGTCTCTAATCAGTGCATCCCCCACCCCAAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGAGCTGGCTCAATGGGTTC
....................................................................................................................................................................................................................................................................................((((((((.((((..............)))).....)))...))))).......................................................................................................
...............................................................................................................................................................................................................................................................................272...................................................326..................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189787SRR040016(GSM532901)
G645N. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................TGACCATGAAGTTACTTAGCTTTTCTGAGC...................................................................................................................................................................................................................................................................30147.0047.0011.007.009.007.005.00-------------1.00----1.00-1.001.001.00---1.00---------1.00---1.00------------
............................................................................................................................................CCATGAAGTTACTTAGCTTTTCTGAG....................................................................................................................................................................................................................................................................2614.004.00------4.00---------------------------------------------------
.........................................................................................................................................TGACCATGAAGTTACTTAGCTTTTCTGA.....................................................................................................................................................................................................................................................................2813.003.00--------1.00---------1.00-------------------------------1.00-------
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTGAAGAGCTGGC...........1813.003.00-3.00--------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................TACTGGTTCAACTATGAGCTGGTGAAGAGCTGG............3312.002.00----------2.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTGGTGAAGAGCTGG............2012.002.00-------------2.00--------------------------------------------
....................................................................................................................................................................................................................................................................................AGACTCACAGCTGGGAC.....................................................................................................................................172.000.00-----2.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................AACTATGAGCTGGTGAAGAGCTGG............2412.002.00---------------2.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................AACTATGAGCTGGTGAAGA.................1912.002.00-----------------1.00--------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGGTGAAGAGCTG.............1812.002.00----------------------------1.00------1.00----------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTGGTGAAGAGCT..............1812.002.00-------------------2.00--------------------------------------
................................................................................................................................................................................................................................................................................................................AGTGAAAGGTGGACGGTC........................................................................................................1812.002.00------------2.00---------------------------------------------
.........................................................................................................................................TGACCATGAAGTTACTTAGCTTT..........................................................................................................................................................................................................................................................................2311.001.00--------1.00-------------------------------------------------
.........................................................................................................................................TGACCATGAAGTTACTTAGCTTTTCTGAG....................................................................................................................................................................................................................................................................2911.001.00---------------------------------------1.00------------------
......................................................................................................................................................................................................................................................................................................................................................................................................AACTATGAGCTGGTGAAGAGCTG.............2311.001.00--------------------1.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGAAGAGCTGGCTC.........1911.001.00--------------------------------------1.00-------------------
...................................................................................................................................................................................................................................................................................................AGGGAGTGGTGGCAGAAAT....................................................................................................................191.000.00---------1.00------------------------------------------------
.........................................................................................................................................TGACCATGAAGTTACTTAGCTTTTCTTA.....................................................................................................................................................................................................................................................................281.000.00--------1.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCTGGTGAAGAGCTGGCT..........2311.001.00------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................TGTACTGGTTCAACTATGAGCTGGTGAAGAGC...............3211.001.00-------1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................AGGTGGACGGTCTGGAGCT.................................................................................................191.000.00----------------1.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAGCTGGCTCA........1621.001.00---------------------------------1.00------------------------
...................................................................AGGGGGTGGGTGAGGGCA.....................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00-------------------------------------------
................................................................................................................................................................................................................................................................................................GGGAGGGAGTGGTGGCTTTT......................................................................................................................201.000.00------------------------------------------------------1.00---
................................................................................................................................................................................................................................................................................................GGGAGGGAGTGGTGGCTTT.......................................................................................................................191.000.00----------------------------------------------------1.00-----
......................................................................................................................................................................................................................................................................................................................................................................................................AACTATGAGCTGGTGAAGAG................2011.001.00-----------------1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTATGAGCTGGTGA....................1911.001.00------------------------------------------1.00---------------
...............................................................................................................................................................................................................TATTTGCCCAGGCGGTCTCG.......................................................................................................................................................................................................201.000.00----------------1.00-----------------------------------------
....................................................................................................................................................TTACTTAGCTTTTCTTAGC...................................................................................................................................................................................................................................................................191.000.00----------------------------------------------1.00-----------
............................CTTCGAGATGTGCCCTTCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------1.00---------------------
.....GGCTGGGCTGGGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................1501.001.00--------------------------------1.00-------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGAGCTGGCTCAA.......1911.001.00-------------------------------------1.00--------------------
................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGAGCTGGCTCAAT......2011.001.00----------------------------------------1.00-----------------
..................................................................................................................................................................................................................................................................................................................TGAAAGGTGGACGGTCTGG.....................................................................................................1911.001.00-----------------------------------------------1.00----------
...........................................................................................................................................................................................................................................................................................................................................................................................TGTACTGGTTCAACTATGAGC..........................2111.001.00---------1.00------------------------------------------------
...............................CGAGATGTGCCCTTCTCAG........................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------1.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTACTGGTTCAACTATGAGC..........................2511.001.00----------------------1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTGGTGAAGAGCTGGC...........2111.001.00-----------------------------------------------------1.00----
................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGAGCTGGCTCAATGG....2211.001.00------------------------------------------------1.00---------
......................................................................................................................................................................................................................................................................................................................................................................................................AACTATGAGCTGGTGAAGAGC...............2111.001.00--------------------1.00-------------------------------------
...................................................................................................................................................................................................................................................................................................AGGGAGTGGTGGCAGCTGC....................................................................................................................191.000.00---------------------------------------------------1.00------
....................................................................................................................................................................................................................................................................................................................................................................................................TCAACTATGAGCTGGTGAAGAGCTG.............2511.001.00-------------------------------------------1.00--------------
...............................................................................................................................................................................................................TATTTGCCCAGGCGGGCT.........................................................................................................................................................................................................181.000.00-----1.00----------------------------------------------------
............................CTTCGAGATGTGCCCTTC............................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTACTGGTTCAACT................................2020.500.50-------------------------------------------------------0.50--
...............................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGAAGAGCTGGCT..........1720.500.50----------------------0.50-----------------------------------
.CTGTGGCTGGGCTGGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................1830.330.33----------0.33-----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAGCTGGCTC.........1570.140.14---------------------------------------------------------0.14

Antisense strand
ACTGTGGCTGGGCTGGGGCCCCACTGCCCTTCGAGATGTGCCCTTCTCAGGTAGGCACCCAAGCTGCAGGGGGTGGGTGAGGGAACCCTGGGGTGATGCACAAAGGGTCTACAGCCAAGTCCCAGCTTTGTGACTAGTGACCATGAAGTTACTTAGCTTTTCTGAGCCATGGGTTTCTCATCTGTGAAGTGGGCCTAGCAGGTAGAGTATTTGCCCAGGCGGTCAGGAGATTAATTCCTACAGAGTGCCTGCTTCTGAGCCTGCATGTAGCAGACAAGACTCACAGCTGGGAGGGAGTGGTGGCAGTGAAAGGTGGACGGTCTGGGGCCACTTCCTTGCCCTTCCCGTCTCTAATCAGTGCATCCCCCACCCCAAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGAGCTGGCTCAATGGGTTC
....................................................................................................................................................................................................................................................................................((((((((.((((..............)))).....)))...))))).......................................................................................................
...............................................................................................................................................................................................................................................................................272...................................................326..................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189787SRR040016(GSM532901)
G645N. (cervix)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................................................................................................GGAGGGAGTGGTGGCAACCG..................................................................................................................... 201.000.00------------------------------1.00---------------------------
......................................................................................................................................................................................................................................................................................................................AGGTGGACGGTCTGGGCAG................................................................................................. 191.000.00---------------------1.00------------------------------------
....................................................................................................................................................................................................AGCAGGTAGAGTATTTTG.................................................................................................................................................................................................................... 181.000.00-----------1.00----------------------------------------------
..............................................................................................................ACAGCCAAGTCCCAGCTTT......................................................................................................................................................................................................................................................................................................... 191.000.00---------1.00------------------------------------------------
.....................................................................................................................................................................................................................................ATTAATTCCTACAGAG..................................................................................................................................................................................... 161.000.00--------------1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................GTGGCAGTGAAAGGTGG.............................................................................................................. 171.000.00-----1.00----------------------------------------------------
...............................................................................................................................................................................................................TATTTGCCCAGGCGGTGGG........................................................................................................................................................................................................ 191.000.00-----------1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................GCCCTTCCCGTCTCTGG........................................................................ 171.000.00-------------------------------------------------1.00--------
...............................................................................................................CAGCCAAGTCCCAGCTTTGGGA..................................................................................................................................................................................................................................................................................................... 221.000.00-----------------------------1.00----------------------------
.................................................................................................................................................................................................................GACCGCCTGGGCAAA.......................................................................................................................................................................................................... 1520.500.50---------------------0.50------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................TGAACCAGTACAGGG................................... 1550.200.20--------------------------------------------------------0.20-