ID: uc002idu.1_intron_1_0_chr17_41566903_f.5p
GENE: DHX8(2)
chr17:41566853-41567102+


(3)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTTTGATACTTTTAAGGCTTCTCTCGTCAAAAATGGTGCAGAATTTACGGTATGTATATGTGGAGAAGATAATCTGTAGATATTAATGTTTTAATTTATGTTTGTTTGTTTGTTTTTTTTTTTGAGACAGAGTTTTGCTCTGTCGCCTGGGCTGGAGTGCAGTGGCGCCACCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCTTGCCTCAGTCTCCCAAGTAGCTGGGACTACAGG
....................................................................................................((((((....................(((((((.....)))))))...(((((((..((((......)).))..)))))))..)))))).............................................................
....................................................................................................101.....................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
......................................................................................................................................................................CGCCACCTCAGCTCAGACG.................................................................1920.000.00---1.003.00---1.001.001.002.00---1.001.00--1.00--2.00------------------1.001.00----1.00-1.00----------------------1.00--1.00-------
......................................................................................................................................................................CGCCACCTCAGCTCAGAC..................................................................1814.000.00---4.002.00---1.001.00-2.00----1.00-----------------------1.00-----------1.00---------------1.00--------------
......................................................................................................................................................................CGCCACCTCAGCTCAGA...................................................................178.000.00---1.00--3.00-1.00-1.00---------------------------1.00-----------1.00--------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGGCGGG................................................................................278.000.008.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................TTCACGCCATTCTCTTGCCCAG..........................225.000.00--3.00----------1.00----------------------------------------1.00----------------------------
.............................................................................................................................................TGTCGCCTGGGCTGGAGTGCAGTGGCGGG................................................................................295.000.005.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACACGT................................................................204.000.00----1.00----1.00----------1.00--------1.00-----------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCCGGGCCC.............................................304.000.002.002.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACACG.................................................................194.000.00----------------2.00--1.00-------------1.00-------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCCGGGCC..............................................293.000.003.00----------------------------------------------------------------------------------
.........................................................................................................TTTGTTTGTTTTTTTTTTTGCTTG.........................................................................................................................243.000.001.001.00---1.00-----------------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTCGG............................................................................................................................253.000.001.002.00---------------------------------------------------------------------------------
..........................................................................................................................................................................ACCTCAGCTCACTGCAAGCTCCGCCCCAG...................................................292.000.002.00----------------------------------------------------------------------------------
.......................................................................................................TGTTTGTTTGTTTTTTTTTTTCTC...........................................................................................................................242.000.00-2.00---------------------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTTCCT...........................................................................................................................262.000.00-1.00---1.00-----------------------------------------------------------------------------
.................................................................................................................................................GCCTGGGCTGGAGTGCAGTGG....................................................................................2102.002.00------------------------2.00----------------------------------------------------------
.............................................................................................................................................TGTCGCCTGGGCTGGAGTGCAGTGGCGG.................................................................................282.000.002.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................TCACGCCATTCTCTTGCCTCCG.........................222.000.00--2.00--------------------------------------------------------------------------------
...............................................................................................TTTATGTTTGTTTGTTTGTTTTCGAG.................................................................................................................................262.000.001.001.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAG....................................................................162.000.00------2.00----------------------------------------------------------------------------
...............................................................................................TTTATGTTTGTTTGTTTGTTTGTC...................................................................................................................................242.000.002.00----------------------------------------------------------------------------------
..............................................................................................ATTTATGTTTGTTTGTTTGTTTTTTTC.................................................................................................................................272.000.00-2.00---------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAGTCTCCCAAGTAGCTCTG........202.000.00---------------------------2.00-------------------------------------------------------
..........................................................................................................................................................................................................TTCACGCCATTCTCTTGCCCA...........................212.000.00--2.00--------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGAAG.................................................................192.000.00--------1.00-----------1.00--------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTTTCCG............................................................................................................................272.000.001.001.00---------------------------------------------------------------------------------
....................................................................................................................................................................................ACTGCAAGCTCCGCCTCCCGGGCCCT............................................261.000.001.00----------------------------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTCG...............................................................................................................................241.000.00-1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTCTTGCCTCAGTCTCCCACTTA..............231.000.00-------------------------------------------------------------------------------1.00---
.................................................................................................TATGTTTGTTTGTTTGTTTTTTTGAG...............................................................................................................................261.000.00-1.00---------------------------------------------------------------------------------
....................................................ATGTATATGTGGAGACTTT...................................................................................................................................................................................191.000.00---------------------1.00-------------------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCGGGG...................................................241.000.001.00----------------------------------------------------------------------------------
.............................................................................................................................................TGTCGCCTGGGCTGGAGTGCAGTGACC..................................................................................271.000.00-1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................TCAGCTCACTGCAAGCTCCGCCTGGGG..................................................271.000.001.00----------------------------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTTTCCTG...........................................................................................................................281.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GCCTCAGTCTCCCAAGTAGCTCTG........241.000.00-------------------------------------------1.00---------------------------------------
.........................................................................................................................................................TGGAGTGCAGTGGCGCCACCAAGC.........................................................................241.000.00-1.00---------------------------------------------------------------------------------
.......................................................................................................................................................................GCCACCTCAGCTCACACG.................................................................181.000.00---1.00-------------------------------------------------------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGGGATG................................................................................271.000.00-1.00---------------------------------------------------------------------------------
............................................................................................................................................................AGTGCAGTGGCGCCACCCCCC.........................................................................211.000.00------------------1.00----------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTCCTG...........................................................................................................................261.000.00-----1.00-----------------------------------------------------------------------------
..................................................................................................ATGTTTGTTTGTTTGTTTTTATGG................................................................................................................................241.000.001.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................CTGCAAGCTCCGCCTCCCGGGTTATT...........................................261.000.00-----------------------------------1.00-----------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACACC.................................................................191.000.00---------1.00-------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACGCG.................................................................191.000.00----------1.00------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGTCG.................................................................191.000.00---1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................ACCTCAGCTCACTGCAATCGC...........................................................211.000.001.00----------------------------------------------------------------------------------
...........TTTAAGGCTTCTCTCG...............................................................................................................................................................................................................................1611.001.00------------------------------------------------1.00----------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCCGGTC...............................................281.000.001.00----------------------------------------------------------------------------------
....................................................................................................................................................TGGGCTGGAGTGCAGTGGCTCGC...............................................................................231.000.00---------1.00-------------------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTTACC.............................................................................................................................261.000.001.00----------------------------------------------------------------------------------
..................................................................................................ATGTTTGTTTGTTTGTTTCGGG..................................................................................................................................221.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CAAGTAGCTGGGACTACCG.191.000.00-----------------------------------------------------------1.00-----------------------
..........................................................................................................................................................................ACCTCAGCTCACTGCAAGCTCCGAC.......................................................251.000.00-1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................CCTCCCGGGTTCACGCCAGTTC...................................221.000.00-------------------------1.00---------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAAAT..................................................................181.000.00--------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCCGGGTCACG...........................................321.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................CGCCTGGGCTGGAGTGCAGTGAA...................................................................................231.000.00--------------1.00--------------------------------------------------------------------
............................................................................................................................................................................CTCAGCTCACTGCAAGGGA...........................................................191.000.00-------------------------------------1.00---------------------------------------------
..........................................................................................................................................................................ACCTCAGCTCACTGCAAGCTCCGTG.......................................................251.000.00-1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCCGGGCTA.............................................301.000.001.00----------------------------------------------------------------------------------
..........................................................................................................................................CTCTGTCGCCTGGGCTGGAGCGCG........................................................................................241.000.001.00----------------------------------------------------------------------------------
...............................AAATGGTGCAGAATTTACG........................................................................................................................................................................................................1911.001.00-------------------------------1.00---------------------------------------------------
.....................................................................................................................................................GGGCTGGAGTGCAGTGGCGAAAA..............................................................................231.000.00--------------1.00--------------------------------------------------------------------
..............AAGGCTTCTCTCGTCAAAAATGGTGC..................................................................................................................................................................................................................2611.001.00--------------------------------1.00--------------------------------------------------
.......................................................................................................................................TTGCTCTGTCGCCTGGGCTGGAGCG..........................................................................................251.000.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACTCGT................................................................201.000.00--------------------1.00--------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGGCG.................................................................191.000.00----1.00------------------------------------------------------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGGCGCAATA.............................................................................301.000.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGCG..................................................................181.000.00---------------1.00-------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTCGG..............................................................................................................................231.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGGC..................................................................181.000.00------------------1.00----------------------------------------------------------------
............................................................................................................................................................................................CTCCGCCTCCCGGGTTCACGCCAGAG....................................261.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................CGCCTGGGCTGGAGTGCAGTTGCA..................................................................................241.000.00-----------------------------1.00-----------------------------------------------------
......................................................................................................TTGTTTGTTTGTTTTTTTTTTTCTTC..........................................................................................................................261.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAAACG.................................................................191.000.00----1.00------------------------------------------------------------------------------
................................AATGGTGCAGAATTTACG........................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00----------------------
....................................................................................................................................................................................ACTGCAAGCTCCGCCTCCGG..................................................201.000.00-----------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................TCAGCTCACTGCAAGCTCCGCCTCCCGGGCC..............................................311.000.001.00----------------------------------------------------------------------------------
.....................CTCTCGTCAAAAATGGTGCAGAATTTACG........................................................................................................................................................................................................2911.001.00------------------1.00----------------------------------------------------------------
..............................................................................................ATTTATGTTTGTTTGTTTGTTTCTA...................................................................................................................................251.000.001.00----------------------------------------------------------------------------------
......................................................................................................TTGTTTGTTTGTTTTTTTTTGGG.............................................................................................................................231.000.001.00----------------------------------------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCACAC....................................................231.000.00-----1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................CCTCCCGGGTTCACGCCCTC.....................................201.000.00-------------------------------------------------------------------1.00---------------
.............................................................................................................................................................................TCAGCTCACTGCAAGCTCCGCCTCCCGGGCCC.............................................321.000.00-1.00---------------------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTCTGG............................................................................................................................251.000.00-1.00---------------------------------------------------------------------------------
.......................................................................................................................................................................GCCACCTCAGCTCACTCCCC...............................................................201.000.00-------------1.00---------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTCG...............................................................................................................................221.000.001.00----------------------------------------------------------------------------------
...........................................................................................................................................TCTGTCGCCTGGGCTGGAGTGCAGTGGCGGG................................................................................311.000.001.00----------------------------------------------------------------------------------
..................................................................................................ATGTTTGTTTGTTTGTTTTTAAGC................................................................................................................................241.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................TTGTTTGTTTTTTTTTTTGCCTC.........................................................................................................................231.000.00-1.00---------------------------------------------------------------------------------
..................................................................................................................................................CCTGGGCTGGAGTGCAGTGTCCT.................................................................................231.000.00-1.00---------------------------------------------------------------------------------
....................................................................................................GTTTGTTTGTTTGTTTTTTTTTTTAATG..........................................................................................................................281.000.00-----1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCCCC.....................................271.000.001.00----------------------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTCGCT............................................................................................................................251.000.001.00----------------------------------------------------------------------------------
...............................................................................................................................................................................AGCTCACTGCAAGCTCCGCCTCCGGGC................................................271.000.001.00----------------------------------------------------------------------------------
.............................AAAAATGGTGCAGAATTTACGGAT.....................................................................................................................................................................................................241.000.00--------------------------------------------------------1.00--------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTTGAT...........................................................................................................................261.000.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACAC..................................................................181.000.00---------------1.00-------------------------------------------------------------------
...................................................................................................................................................CTGGGCTGGAGTGCAGTGGCG..................................................................................2101.001.00-------1.00---------------------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTCGG..............................................................................................................................251.000.00-1.00---------------------------------------------------------------------------------
............................................................................................................................................CTGTCGCCTGGGCTGGAGTGCAGTGGCGGG................................................................................301.000.001.00----------------------------------------------------------------------------------
............................CAAAAATGGTGCAGAATTTACG........................................................................................................................................................................................................2211.001.00----------------------------------1.00------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACTCG.................................................................191.000.00---------------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................CCTCAGTCTCCCAAGTAGCTCTG........231.000.00-------------------------------------------------------------------------1.00---------
....................................................................................................................................................................................ACTGCAAGCTCCGCCTCCCGGGGCCA............................................261.000.00-1.00---------------------------------------------------------------------------------
...................................................................................................................................................................................................TCCCGGGTTCACGCCATTCTCTACAA.............................261.000.00------------------------------1.00----------------------------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGGCGGGCG..............................................................................291.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACCCGT................................................................201.000.00-------------------1.00---------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTTAAGG..........................................................................................................................271.000.00-----1.00-----------------------------------------------------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGAAAC.................................................................................261.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTCACC...........................................211.000.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCAGC...................................................................171.000.00------1.00----------------------------------------------------------------------------
.............................................................................................................................................TGTCGCCTGGGCTGGAGTGCACGCC....................................................................................251.000.001.00----------------------------------------------------------------------------------
.............................................................................................................TTTGTTTTTTTTTTTGATTC.........................................................................................................................201.000.001.00----------------------------------------------------------------------------------
.................................................................................................TATGTTTGTTTGTTTGTTTTGCTC.................................................................................................................................241.000.001.00----------------------------------------------------------------------------------
.....................................................................................................TTTGTTTGTTTGTTTTTTTTTTTGCTT..........................................................................................................................271.000.00-----1.00-----------------------------------------------------------------------------
.......................................................................................................................................................GCTGGAGTGCAGTGGCGCCGT..............................................................................211.000.00---------------------------------------1.00-------------------------------------------
....................................................................................................................................................................................ACTGCAAGCTCCGCCTCCCGGGGCC.............................................251.000.001.00----------------------------------------------------------------------------------
.................................................................................................................................................GCCTGGGCTGGAGTGCAGTGGCGTGT...............................................................................261.000.00--------------1.00--------------------------------------------------------------------
..................................................GTATGTATATGTGGAGAAAG....................................................................................................................................................................................2021.000.50---------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................TTCACGCCATTCTCTTGCCTAAG.........................231.000.00--1.00--------------------------------------------------------------------------------
.........................................................................................................................TTTGAGACAGAGTTTTGCTCCGCC.........................................................................................................241.000.001.00----------------------------------------------------------------------------------
..........................................................................................................................................................................ACCTCAGCTCACTGCAAGCTCCGCCCCC....................................................281.000.00-1.00---------------------------------------------------------------------------------
.................................................................................................TATGTTTGTTTGTTTGTTTTTCCC.................................................................................................................................241.000.00-1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................TCACGCCATTCTCTTGCCCCC..........................211.000.00--1.00--------------------------------------------------------------------------------
......................................................................................................TTGTTTGTTTGTTTTTTTTTTCGAG...........................................................................................................................251.000.00-1.00---------------------------------------------------------------------------------
...................................................................................................TGTTTGTTTGTTTGTTTTTTTTTGGTG............................................................................................................................271.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCATGCG.................................................................191.000.00---------------1.00-------------------------------------------------------------------
...............................................................................................................................................TCGCCTGGGCTGGAGTGCAGTGCGCG.................................................................................261.000.001.00----------------------------------------------------------------------------------
......................................................................................................................................................................CGCCACCTCAGCTCACGCGT................................................................201.000.00----------1.00------------------------------------------------------------------------
....................................................................................................GTTTGTTTGTTTGTTTTTTTTTCTGG............................................................................................................................261.000.001.00----------------------------------------------------------------------------------
....................................................................................................GTTTGTTTGTTTGTTTTTTTTTTCTTC...........................................................................................................................271.000.001.00----------------------------------------------------------------------------------
..................................................................................................ATGTTTGTTTGTTTGTTCGAG...................................................................................................................................211.000.00-1.00---------------------------------------------------------------------------------
..................................................................................................................................................................................TCACTGCAAGCTCCGCCTCCCGGGGGC.............................................271.000.001.00----------------------------------------------------------------------------------
.......................................................................................TGTTTTAATTTATGTTTGTTTGTTTGCTTG.....................................................................................................................................301.000.001.00----------------------------------------------------------------------------------
...........................................................................................................TGTTTGTTTTTTTTTTTGGGAG.........................................................................................................................221.000.00-1.00---------------------------------------------------------------------------------
..................................................GTATGTATATGTGGAGAA......................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------------0.50-

Antisense strand
CCTTTGATACTTTTAAGGCTTCTCTCGTCAAAAATGGTGCAGAATTTACGGTATGTATATGTGGAGAAGATAATCTGTAGATATTAATGTTTTAATTTATGTTTGTTTGTTTGTTTTTTTTTTTGAGACAGAGTTTTGCTCTGTCGCCTGGGCTGGAGTGCAGTGGCGCCACCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCTTGCCTCAGTCTCCCAAGTAGCTGGGACTACAGG
....................................................................................................((((((....................(((((((.....)))))))...(((((((..((((......)).))..)))))))..)))))).............................................................
....................................................................................................101.....................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.............................................................................................................................................................................................TCCGCCTCCCGGGTTCACGCCATTAAAT................................. 282.000.00--------------------------------------------------------------1.00------1.00-------------
..............................................................................................................................................................................................CCGCCTCCCGGGTTCACGCGGGT..................................... 232.000.00--------------------------------1.00-----------1.00--------------------------------------
.......................................................................................................................................................................................................................CTTGCCTCAGTCTCCCT.................. 172.000.00----------------------------2.00------------------------------------------------------
.............................................................................................................................................................................................TCCGCCTCCCGGGTTCACGCCATACTT.................................. 272.000.00------------1.00-------------------------------------------------------------1.00--------
...................................................................................................................................................................................CACTGCAAGCTCCGCCTCCCGGGTTCTCT.......................................... 292.000.00-----------------------2.00-----------------------------------------------------------
......................................................................................................................................................................................TGCAAGCTCCGCCTCCCGGGTTTAA........................................... 252.000.00-------------2.00---------------------------------------------------------------------
..............................................................................................................................................GTCGCCTGGGCTGGAGTGCAGTTGAC.................................................................................. 262.000.002.00----------------------------------------------------------------------------------
........................................................................................................................................................................................CAAGCTCCGCCTCCCGGGTTCACGCCTAG..................................... 291.000.00------------1.00----------------------------------------------------------------------
..................................................................................................................................CGACAGAGCAAAACTC........................................................................................................ 1601.001.00-------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATTT.................................... 231.000.00--------------------------------------------------------------------------------1.00--
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATTTTT.................................. 251.000.00---------------------1.00-------------------------------------------------------------
......................................................................................................................................................................................TGCAAGCTCCGCCTCCCGGGTTCACGCCATA..................................... 311.000.00------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCATTCCC.................................. 301.000.00-------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................CCATTCTCTTGCCTCAGAGG...................... 201.000.00------------------------------------1.00----------------------------------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATTCTTC................................. 261.000.00-1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................TCCGCCTCCCGGGTTCACGACT....................................... 221.000.00-------------------------------------------------------------1.00---------------------
...................................................................................................................................................................................CACTGCAAGCTCCGCCTCCCGGGTTCTT........................................... 281.000.001.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGCGA............................................. 191.000.00--------------1.00--------------------------------------------------------------------
............................................................................................................................................CTGTCGCCTGGGCTGGAGTGCAGTGGGG.................................................................................. 281.000.001.00----------------------------------------------------------------------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATTAAT.................................. 251.000.00-------1.00---------------------------------------------------------------------------
..................................................................................................................................................................................TCACTGCAAGCTCCGCCTCCCGGGTTTT............................................ 281.000.00---------------------------------------------------------1.00-------------------------
.............................................................................................................................................................................................................................CCCAGCTACTTGGGAGACTGA........ 2101.001.00----------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................CTTGGGAGACTGAGGCAAGA................ 2001.001.00-----------------------------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................CTTGCCTCAGTCTCCCAACACA............. 221.000.00-1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................TGCAAGCTCCGCCTCCCGGGTTT............................................. 231.000.00-----------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................CACGCCATTCTCTTGCCTCGCC........................ 221.000.00-----------------------------------------------------1.00-----------------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACCCGC....................................... 201.000.00-------------------------------------------------------1.00---------------------------
....................................................................................................................................................................................ACTGCAAGCTCCGCCTCCCGGGTTTCT........................................... 271.000.00------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCATCGA................................... 291.000.001.00----------------------------------------------------------------------------------
................................................................................................................................................................................................AAGAGAATGGCGTGAACCCGGGAGGC................................ 2601.001.00-------1.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................ATTCTCTTGCCTCAGTCTCCCAAGTATCTG.......... 301.000.00---------------------------------------------------1.00-------------------------------
...........................................................................................................................................................................................................CAAGAGAATGGCGTGA............................... 1601.001.00-------1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCACCC.................................... 281.000.001.00----------------------------------------------------------------------------------
...............................AAATGGTGCAGAATTCG.......................................................................................................................................................................................................... 171.000.00---------------------------------------------1.00-------------------------------------
..............................................................................................................................................................................................CCGCCTCCCGGGTTCACGCCATTGGCA................................. 271.000.00-1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................CTCCGCCTCCCGGGTTCACGCCATAA.................................... 261.000.00----------------------------------------------------------------------1.00------------
......................................................................................................................................................GGCTGGAGTGCAGTGGCGCCAGGCA........................................................................... 251.000.001.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCAAA.......................................... 221.000.00----------------------------------------------------------------1.00------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATT..................................... 221.000.00-------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................CTGCAAGCTCCGCCTCCCGGGAGG............................................. 241.000.00-------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCATAAC................................... 291.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................................................GGTGGCGCCACTGCACTCC............................................................................. 1901.001.00------------------------------------------------------------------1.00----------------
....................................................................................................................................................................................................CAAGAGAATGGCGTGAACCCGGG............................... 2301.001.00--------------------------1.00--------------------------------------------------------
............................................................................................................................................................................................................AGGCAAGAGAATGGCGTG............................ 1801.001.00-----------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................CGCCTCCCGGGTTCACGCCATTTAA.................................. 251.000.00-----------------------------------------------------------------------1.00-----------
......................................................................................................................................................................................................CGGGTTCACGCCATTCTTGAT............................... 211.000.00----------------------------------------------1.00------------------------------------
.............................................................................................................................................TGTCGCCTGGGCTGGAGTGCAGTGGTAG................................................................................. 281.000.00-----1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................TTCTCTTGCCTCAGTCTCCCAACCAC............. 261.000.00-1.00---------------------------------------------------------------------------------
..............................................................................................................................................................................................CCGCCTCCCGGGTTCATG.......................................... 181.000.00------------1.00----------------------------------------------------------------------
.............................................................................................................................................................................TCAGCTCACTGCAAGCTCCGA........................................................ 211.000.00------------------------------------------------------------------------------1.00----
.............................................................................................................................................................................TCAGCTCACTGCAAGCTCCGCCAA..................................................... 241.000.00--------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................CAGCTCACTGCAAGCTCCGCCTCGGG.................................................. 261.000.00----------------------------------------------------------------------------1.00------
......................................................................................................................................................................................TGCAAGCTCCGCCTCCCGGGTTCACGCCACG..................................... 311.000.001.00----------------------------------------------------------------------------------
.....................................................................................................................................................GGGCTGGAGTGCAGTGGCGCCAGGCG........................................................................... 261.000.001.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACTTGGGAGACTGAGGCAAGAG............... 2201.001.00-----------------------------------------------------------------------------1.00-----
..........................................................................................................................................................................................AGCTCCGCCTCCCGGGTTCACGCCACTG.................................... 281.000.00-1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................CCTCAGCTCACTGCAAGCTCCGCCTCC.................................................... 271.000.00-1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................TTGGGAGACTGAGGCAAGAGAATGG................. 2590.110.11----------------------------------------------------------------------------------0.11