ID: uc002idu.1_intron_18_0_chr17_41597636_f
GENE: DHX8(19)
chr17:41597586-41598168+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(3)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(4)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CACTGGGGGCCCTGGATGACGAGGGCCTGCTCACTCGCTTGGGCCGCCGGGTAAGGGACAGACTCAACTTCCTGTGCTTTTGGGAAGATTCCCTGGTCAGCCTTTCACATCCTTCGGTCTGTACAAAATCAGGCTGAGGCCGTGGATAAGCTTTGAGTAAAATTCTAAATGTTTGTTTTTAACCTGAATTTCTCCACTGTCACTTTAAACTGTTTCTTCTTTATACAAAAAGGTGTTCTGTTCATAATTTTGCCTGAGGATGTATTACTGAATGTAGCCTTAATTAGAAACGGCATCTGCAAAATTCTCATCTACCCCAACAGTAGTTATATGCTTGGTCACATACATCCCGTTGGAGTTTATTTGGGAAAAGAATAAACAACAGCATTCTTCTGATAGAGAAAGGCATCCCAAGGCATCATTATGCTTTGGGAAAATCTGTGTTGTTACCCACTCTGACCAAGGTCTTGCTCTGGTGAATCCAAATGTGTCTTCCACAGGGAAGCAGTTGTAGTCTTTTTTTGTCCCTCTAGATGGCAGAGTTCCCTCTGGAGCCAATGCTATGCAAAATGCTCATCATGTC
........................................................................................................................................................................................(((((.....((((.......((((..........))))........))))....)))))......((.(((((.(((((((((((...((((.....((.((((...((....))....)))).)))))).....))))))).)))).))))).))..................................................................................................................................................................................................................................................
.....................................................................................................................................................................................182................................................................................................................................................................345............................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189786SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532877(GSM532877)
G691N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTCTC..................................................................................................................................................................................................................................................2037.000.0037.00----------------------------
..................................................................................................................................................................................................................................................................................................................................GTAGTTATATGCTTGTCTC..................................................................................................................................................................................................................................................1919.000.0019.00----------------------------
................................................................................................................................................................................................................................................................................................................................CAGTAGTTATATGCTTGTCTC..................................................................................................................................................................................................................................................216.000.006.00----------------------------
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTCT...................................................................................................................................................................................................................................................194.000.004.00----------------------------
..................................................................................................................................................................................................................................................................................................................................GTAGTTATATGCTTGTCTA..................................................................................................................................................................................................................................................192.000.002.00----------------------------
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTC....................................................................................................................................................................................................................................................182.000.002.00----------------------------
................................................................................................................................................................................................................................................................................................................................CAGTAGTTATATGCTTGTCT...................................................................................................................................................................................................................................................202.000.002.00----------------------------
................................................................................................................................................................................................................................................................................................................................CAGTAGTTATATGCTTGTC....................................................................................................................................................................................................................................................192.000.002.00----------------------------
.ACTGGGGGCCCTGGATGACGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00----2.00------------------------
..CTGGGGGCCCTGGATGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------1.00--------------
...........CTGGATGACGAGGGCCTGCTCACTCGCTTGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00-------1.00---------------------
..........CCTGGATGACGAGGGCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------1.00----------------
...............ATGACGAGGGCCTGCTCACTCGCTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00---1.00-------------------------
..........................................................................................................................................................................................AATTTCTCCACTGTCACTTTAA.......................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------1.00---------------
......................................................................................................TTTCACATCCTTCGGTCTGTACAAAATCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00-----1.00-----------------------
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTATC..................................................................................................................................................................................................................................................201.000.001.00----------------------------
......................................................................................................................................................................................................................................................................TATTACTGAATGTAGCCTTAATTAGAAACG...................................................................................................................................................................................................................................................................................................3011.001.00-----------------1.00-----------
................................................................................................................................................................................................................................................................................................................................CAGTAGTTATATGCTTGTCA...................................................................................................................................................................................................................................................201.000.001.00----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGCAGAGTTCCCTCT.................................1911.001.00---------------------1.00-------
..CTGGGGGCCCTGGATGACGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTCTA..................................................................................................................................................................................................................................................201.000.001.00----------------------------
...........CTGGATGACGAGGGCCTGCTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------1.00------------
...............................................................................................................................................................................................................................................................GAGGATGTATTACTGGCGA.....................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00-----
.................................................................................................................................................................................................................................................................................................................................AGTAGTTATATGCTTGTCCC..................................................................................................................................................................................................................................................201.000.001.00----------------------------
................TGACGAGGGCCTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---1.00-------------------------
................................................................................................................................................................................................................................................................................................................................CAGTAGTTATATGCTTGTATA..................................................................................................................................................................................................................................................211.000.001.00----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGAGTTCCCTCTGGAGCCAATGCTACGC.................321.000.00---1.00-------------------------
....................................................AAGGGACAGACTCAACTTCCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------1.00----------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGAAGCAGTTGTAG.....................................................................1820.500.50-------------------------0.50---
..........................................................CAGACTCAACTTCCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50--------------------------0.50--
...........................................................................................................................................................................................................................................................................................................................................TGCTTGGTCACATACA............................................................................................................................................................................................................................................1630.330.33---------------------------0.33-
..................................................................................................................................................................................................................................................................................................CGGCATCTGCAAAAT......................................................................................................................................................................................................................................................................................1530.330.33------0.33----------------------
.............................................................................................................................................................................................................................................................................................................................................CTTGGTCACATACAT...........................................................................................................................................................................................................................................1560.170.17----------------------------0.17

Antisense strand
CACTGGGGGCCCTGGATGACGAGGGCCTGCTCACTCGCTTGGGCCGCCGGGTAAGGGACAGACTCAACTTCCTGTGCTTTTGGGAAGATTCCCTGGTCAGCCTTTCACATCCTTCGGTCTGTACAAAATCAGGCTGAGGCCGTGGATAAGCTTTGAGTAAAATTCTAAATGTTTGTTTTTAACCTGAATTTCTCCACTGTCACTTTAAACTGTTTCTTCTTTATACAAAAAGGTGTTCTGTTCATAATTTTGCCTGAGGATGTATTACTGAATGTAGCCTTAATTAGAAACGGCATCTGCAAAATTCTCATCTACCCCAACAGTAGTTATATGCTTGGTCACATACATCCCGTTGGAGTTTATTTGGGAAAAGAATAAACAACAGCATTCTTCTGATAGAGAAAGGCATCCCAAGGCATCATTATGCTTTGGGAAAATCTGTGTTGTTACCCACTCTGACCAAGGTCTTGCTCTGGTGAATCCAAATGTGTCTTCCACAGGGAAGCAGTTGTAGTCTTTTTTTGTCCCTCTAGATGGCAGAGTTCCCTCTGGAGCCAATGCTATGCAAAATGCTCATCATGTC
........................................................................................................................................................................................(((((.....((((.......((((..........))))........))))....)))))......((.(((((.(((((((((((...((((.....((.((((...((....))....)))).)))))).....))))))).)))).))))).))..................................................................................................................................................................................................................................................
.....................................................................................................................................................................................182................................................................................................................................................................345............................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189786SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532877(GSM532877)
G691N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................................TCTCCACTGTCACTTTATA...................................................................................................................................................................................................................................................................................................................................................................................... 193.000.00-3.00---------------------------
............................................................................................................................................................................................TAAAGTGACAGTGGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................ 1913.003.00-2.001.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTCCCTCTGGGTGG........................... 192.000.00--------1.00-1.00------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTCCCTCTGGGTG............................ 181.000.00---------1.00-------------------
..............................................................................................CCGAAGGATGTGAAAGGCTGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2311.001.00------1.00----------------------
..........................................................................................................................................................................................AATTTCTCCACTGTCACTTTAGA...................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00-1.00---------------------------
............................................................................................................................................................................................TTTCTCCACTGTCACTTTAGCGG.................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00--1.00--------------------------
.................................................................................................................................................................................TTTAACCTGAATTTCTTAAT.................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00-------------------1.00---------
..............................................................................................................................................................................................TCTCCACTGTCACTTTATAA..................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTGGAGCCAAGG....................... 191.000.00--1.00--------------------------
..........................................................................................................ACATCCTTCGGTCTGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------1.00-----------------
........................................................................................................................................................................................................................................................................................................................................................................................AAACAACAGCATTCTTCTTTTA......................................................................................................................................................................................... 221.000.00----------------------1.00------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTGGAGCCAAG........................ 181.000.00--1.00--------------------------
...............................................................................................................................ATCAGGCTGAGGCCGTGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00--------------------1.00--------
.........CCTCGTCATCCAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1520.500.50------------------------0.50----
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGTGGAAGACACA................................................................................ 1720.500.50-----0.50-----------------------