ID: uc002idt.2_intron_0_0_chr17_41476462_f.5p
GENE: (1)
chr17:41476412-41476661+


(5)
B-CELL 		(5)
BREAST 		(22)
CELL-LINE 		(7)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(2)
LIVER 		(1)
OTHER 		(16)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GCTGCGGTGTTTCACCGGGAAAGGCTCGAGGAGAGCGCGGCTCACGAGAGGTAAACGGACCCTGCAGACCGTGCTGAGGCGGTCCCGGTGCCGGGCCGCTGGAGCTGGGGTCGGCCATCGGAGGAGGGCGGGCGGGCAGGAGAGTGTCGCGGGGCGGTGGGGCGAGGGTCGCGGAGTAAGGAAGGGCACCGTGTCAACGGCTTGGGGCTGCGGAGGGCGGGTGGGAGCCGGACTCAATCTCCGGTCTCAG
............................................................(((((...(((.(((..(((((.((((....)))))))))..)))))).(((.(((.((....)).))).)))..)))))..............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037938(GSM510476)
293Red. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040035(GSM532920)
G001T. (cervix)
........................................................................................................................GAGGAGGGCGGGCGGGAA................................................................................................................188.000.00-------3.00----------1.00----2.00---------------------------1.00-1.00------------
...............................................GAGGTAAACGGACCCTGC.........................................................................................................................................................................................1817.007.005.002.00----------------------------------------------------------------
........................................CTCACGAGAGGTAAACGGACC.............................................................................................................................................................................................2116.006.00-6.00----------------------------------------------------------------
................................................AGGTAAACGGACCCTGCAG.......................................................................................................................................................................................1915.005.005.00-----------------------------------------------------------------
..............CCGGGAAAGGCTCGAGGA..........................................................................................................................................................................................................................1814.004.00--4.00---------------------------------------------------------------
..................GAAAGGCTCGAGGAGAGCGCGGCT................................................................................................................................................................................................................2414.004.00------------------1.00-1.00----------------------------1.00------1.00---------
.............ACCGGGAAAGGCTCGAGGA..........................................................................................................................................................................................................................1914.004.00-----4.00------------------------------------------------------------
................................................AGGTAAACGGACCCTGCAGA......................................................................................................................................................................................2013.003.00---2.00----------------------1.00---------------------------------------
............................................................CCTGCAGACCGTGCTGAGGC..........................................................................................................................................................................2013.003.00--------3.00---------------------------------------------------------
......................................................................................................................................................GGGGCGGTGGGGCGATGG..................................................................................182.000.00-----------------2.00------------------------------------------------
..........................................................ACCCTGCAGACCGTGCTGA.............................................................................................................................................................................1912.002.00--2.00---------------------------------------------------------------
........................................................................................................................GAGGAGGGCGGGCGGGTA................................................................................................................182.000.00--------------1.00---------------------------1.00-----------------------
............................................CGAGAGGTAAACGGACCCTGCAGA......................................................................................................................................................................................2412.002.00---2.00--------------------------------------------------------------
..................GAAAGGCTCGAGGAGAGCGCG...................................................................................................................................................................................................................2112.002.00----------------------2.00-------------------------------------------
....................AAGGCTCGAGGAGAGCGCGGCTCTTT............................................................................................................................................................................................................262.000.00------------2.00-----------------------------------------------------
..................................................................................................................................................................................................................CGGAGGGCGGGTGGGA........................1612.002.00----------1.00-----------------------------------1.00-------------------
..................GAAAGGCTCGAGGAGAGCGCGG..................................................................................................................................................................................................................2212.002.00------1.00----1.00------------------------------------------------------
..................GAAAGGCTCGAGGAGAGCGCGGCTGT..............................................................................................................................................................................................................2612.004.00----2.00-------------------------------------------------------------
............................................................................................................................................................................................................GGGCTGCGGAGGGCGGGTGGGAGCCGGACTC...............3112.002.00---------2.00--------------------------------------------------------
.................GGAAAGGCTCGAGGAGAGCGCGG..................................................................................................................................................................................................................2312.002.00----------------1.00--------------------------------------1.00----------
........................................................................................................................GAGGAGGGCGGGCGGGCA................................................................................................................1821.501.50--------------------------------------------------------------0.500.500.50-
...........................GAGGAGAGCGCGGCTCACGAGAGAT......................................................................................................................................................................................................251.000.00---------------------------1.00--------------------------------------
.....................................................AACGGACCCTGCAGAC.....................................................................................................................................................................................1611.001.00--------------------1.00---------------------------------------------
........................................................................................................................GAGGAGGGCGGGCGGGAAG...............................................................................................................191.000.00-----------------------------1.00------------------------------------
...................................CGCGGCTCACGAGAGGTAAACG.................................................................................................................................................................................................2211.001.00-------------------------------1.00----------------------------------
...........................................................................................................................GAGGGCGGGCGGGCATT..............................................................................................................171.000.00-------------1.00----------------------------------------------------
.................................................GGTAAACGGACCCTGCAG.......................................................................................................................................................................................1811.001.00--------------------------------1.00---------------------------------
.............................................................................................................................GGGCGGGCGGGCAGGAGA...........................................................................................................1811.001.00--------------1.00---------------------------------------------------
......................................GGCTCACGAGAGGTAAACGGA...............................................................................................................................................................................................2111.001.00----------1.00-------------------------------------------------------
...................AAAGGCTCGAGGAGAGCGCGGCT................................................................................................................................................................................................................2311.001.00--------------------------------------------1.00---------------------
......................................................................................................................................................GGGGCGGTGGGGCGAGCG..................................................................................181.000.00------------------------------------------------------------1.00-----
.....................................................AACGGACCCTGCAGACCGTG.................................................................................................................................................................................2011.001.00------------------------------------------------------1.00-----------
.......................................................CGGACCCTGCAGACCGTG.................................................................................................................................................................................1811.001.00------------------------------------1.00-----------------------------
..................GAAAGGCTCGAGGAGAGCGCGGCAT...............................................................................................................................................................................................................2511.001.00----------------------------------------------------1.00-------------
..............................................AGAGGTAAACGGACCCTG..........................................................................................................................................................................................1811.001.00--------------------------------------------------1.00---------------
................................................AGGTAAACGGACCCTGCAGAC.....................................................................................................................................................................................2111.001.00----1.00-------------------------------------------------------------
......GTGTTTCACCGGGAAAGGCT................................................................................................................................................................................................................................2011.001.00--------------------------------------1.00---------------------------
.................................................GGTAAACGGACCCTGCAGA......................................................................................................................................................................................1911.001.00----1.00-------------------------------------------------------------
...............CGGGAAAGGCTCGAGGAGAGCGCGGCT................................................................................................................................................................................................................2711.001.00----1.00-------------------------------------------------------------
..........................................CACGAGAGGTAAACGGACCCTGCAGAC.....................................................................................................................................................................................2711.001.00---------1.00--------------------------------------------------------
..................................................GTAAACGGACCCTGCAGACCGTGC................................................................................................................................................................................2411.001.00-----------------------------------------------1.00------------------
.....................................................................................................................................................................................................................AGGGCGGGTGGGAGCCGT...................181.000.00---------------------1.00--------------------------------------------
...................AAAGGCTCGAGGAGAGCGCGGCTT...............................................................................................................................................................................................................2411.001.00------1.00-----------------------------------------------------------
....................................................................................................................ATCGGAGGAGGGCGGGCGGG..................................................................................................................2011.001.00-------------------------------------1.00----------------------------
.......................................................................................................................GGAGGAGGGCGGGCGTTA.................................................................................................................181.000.00-------------------------------------------1.00----------------------
................GGGAAAGGCTCGAGGAGAGC......................................................................................................................................................................................................................2011.001.00---------------------------------------1.00--------------------------
..................GAAAGGCTCGAGGAGAGCGCGGC.................................................................................................................................................................................................................2311.001.00---------------------------------------------------------1.00--------
............CACCGGGAAAGGCTCGAGGAGAGCG.....................................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------------------------
....................AAGGCTCGAGGAGAGCGCGGCT................................................................................................................................................................................................................2211.001.00-----------------------------------------1.00------------------------
...................................................TAAACGGACCCTGCAGAC.....................................................................................................................................................................................1811.001.00---------------------1.00--------------------------------------------
..........................................................................................................................................................................................................TGGGGCTGCGGAGGGCGGGTA...........................211.000.00------1.00-----------------------------------------------------------
....................................................................................................................................................GCGGGGCGGTGGGGCCTGT...................................................................................191.000.00------------------------------1.00-----------------------------------
..................................................GTAAACGGACCCTGCAGACC....................................................................................................................................................................................2011.001.00-------------------1.00----------------------------------------------
..............................................................................................................................................................................AGTAAGGAAGGGCACCGTGTCA......................................................2211.001.00-----------1.00------------------------------------------------------
..............................................AGAGGTAAACGGACCCGTC.........................................................................................................................................................................................191.000.00------1.00-----------------------------------------------------------
.............................................GAGAGGTAAACGGACCCTGCAGA......................................................................................................................................................................................2311.001.00------------------------1.00-----------------------------------------
..............................................................................................GCCGCTGGAGCTGGGGTCGG........................................................................................................................................2011.001.00---1.00--------------------------------------------------------------
.................................................................................................GCTGGAGCTGGGGTCGT........................................................................................................................................171.000.00----------------------------------------1.00-------------------------
..........................................................................................................................GGAGGGCGGGCGGGCATC..............................................................................................................181.000.00-----------------------------------1.00------------------------------
................................................AGGTAAACGGACCCTGCAGACCG...................................................................................................................................................................................2311.001.00-------------------1.00----------------------------------------------
..........................................................................................................................................................................................................TGGGGCTGCGGAGGGCGGGTG...........................2111.001.00----------------1.00-------------------------------------------------
...................AAAGGCTCGAGGAGAGCGCGGCTTT..............................................................................................................................................................................................................2511.001.00-------------1.00----------------------------------------------------
......................................................................................................................................................GGGGCGGTGGGGCGAGGGTCG...............................................................................2111.001.00---------------------------------------------1.00--------------------
.................................................GGTAAACGGACCCTGC.........................................................................................................................................................................................1611.001.00----------------------------------------------------------1.00-------
..............................................................................................................................................................................................................GCTGCGGAGGGCGGGGGGT.........................191.000.00---------------------------------1.00--------------------------------
.......................................................................................................................................................GGGCGGTGGGGCGAGGGTCGCGG............................................................................2311.001.00---1.00--------------------------------------------------------------
...................AAAGGCTCGAGGAGAGCGCGG..................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------1.00------
........................................................................................................................GAGGAGGGCGGGCGGGCAA...............................................................................................................1920.501.50------------------------0.50-----------------------------------------
............................................................................................................................AGGGCGGGCGGGCAGGAG............................................................................................................1820.500.50-------------------------------------------------------------0.50----
.......................................................................................................................GGAGGAGGGCGGGCGGG..................................................................................................................1780.250.25-------0.25----------------------------------------------------------
.....................................................................................................................................................................................................................AGGGCGGGTGGGAGC......................1570.140.14-------------------------0.14----------------------------------------
.....................................................................................................................................................................................................................AGGGCGGGTGGGAGCGGT...................1870.140.14-----------------------------------------------------------------0.14

Antisense strand
GCTGCGGTGTTTCACCGGGAAAGGCTCGAGGAGAGCGCGGCTCACGAGAGGTAAACGGACCCTGCAGACCGTGCTGAGGCGGTCCCGGTGCCGGGCCGCTGGAGCTGGGGTCGGCCATCGGAGGAGGGCGGGCGGGCAGGAGAGTGTCGCGGGGCGGTGGGGCGAGGGTCGCGGAGTAAGGAAGGGCACCGTGTCAACGGCTTGGGGCTGCGGAGGGCGGGTGGGAGCCGGACTCAATCTCCGGTCTCAG
............................................................(((((...(((.(((..(((((.((((....)))))))))..)))))).(((.(((.((....)).))).)))..)))))..............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037938(GSM510476)
293Red. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR040035(GSM532920)
G001T. (cervix)
..................................................CTCAGCACGGTCTGCAGGGTCCGTTTAC............................................................................................................................................................................ 2812.002.00---------------2.00--------------------------------------------------
...................................................................................................................................................CGCGGGGCGGTGGGGGA...................................................................................... 171.000.00-------------------------1.00----------------------------------------
...................................................................................................................................................CGCGGGGCGGTGGGGCGT..................................................................................... 181.000.00----------------------------1.00-------------------------------------
...................................................................................................................................................................................................TCCCACCCGCCCTCCGCAGCCCCAAGCCGTT........................ 3111.001.00------------------------------------------------1.00-----------------