| (1) B-CELL | (1) BRAIN | (1) BREAST | (7) CELL-LINE | (4) CERVIX | (1) HEART | (1) HELA | (1) LIVER | (2) OTHER | (7) SKIN | (1) XRN.ip |
| AAGGAAATCGAGACCTACCACAACCTCCTTGAGGGAGGCCAGGAAGACTTGTAGGTCCCCCAGGATTTGGTGGAACCCCTGGGGGTCCCTAGGCCTCTGATACTACTTCTGTCCCTCTGGATAGAGGCAGCTGGGGGAAGTTCTTATACACAGGGTCTTATGGGTTGAGGACTTCTTCATCCTGGGGGCCGGGGGGACCTCAGTGCATTTGGGCTTTGGGAAAGGAGGATGGTGACACTGAGAGAACGGGCTGCCTCCCTGCTCCAGGGAGGGGAGGGCTCCACAGTCTCAGCTGGAGGCTCTCCTCTCCCAGCTGTGGTGCCCGCCCAGACTCTGTCCTCTGCCTCCCAGGAAGGAAAACAGAAAGATTCATGTTTGGGTCCTGACTCTGTCCAGGTCCATCCTCATATATGTGTATGGGGGCCGCTCATTTTAACTCTCTTGTTTTCTTTCTTTCTTAGTGAATCCTCCGGAGCTGGAAAAATTGGCCTTGGAGGTCGAGGAGGAAGTG ..................................................(((((((((((((...((((.((....((((((....)))))))).))))..((.(((((((((....))))))))).))))))))))....)))))............................................................................................................................................................................................................................................................................................................................................................................ ..................................................51.................................................................................................150....................................................................................................................................................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR189784 | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040035(GSM532920) G001T. (cervix) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330888(SRX091726) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR189787 | SRR330910(SRX091748) tissue: normal skindisease state: normal. (skin) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR040009(GSM532894) G727T. (cervix) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR040023(GSM532908) G575T. (cervix) | SRR037937(GSM510475) 293cand2. (cell line) | SRR040007(GSM532892) G601T. (cervix) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | TAX577589(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................GAAGTTCTTATACACTCAG.................................................................................................................................................................................................................................................................................................................................................................... | 19 | 42.00 | 0.00 | 24.00 | 15.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGAGCTGGAAAAAA.......................... | 16 | 3.00 | 0.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCCGGAGCTGGGG.............................. | 17 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................TCCTTGAGGGAGGCCAGGAAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGAGGAAGAGA | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTTTTCTTTCTTTTTTG................................................... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTAACTCTCCTAA.................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................GCTGGAGGCTCTCCTGTGT......................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTCCTGACTCTGTAG..................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTTTCTTTCTAGTC................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................GAAGTTCTTATACACTCCG.................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AGGCAGCTGGGGGAAGTGGAA.............................................................................................................................................................................................................................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ................................................................................................................................................TATACACAGGGTCTTTCTT............................................................................................................................................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTGGAGGTCGAGGA....... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TCTGGATAGAGGCAGCTGGGGGGGG................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTGTTTTCTTTCTTTCTTTTG................................................. | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................GGGCTCCACAGTCTCCTC.......................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................GGTGGAACCCCTGGGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................GAAGTTCTTATACACACAG.................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................TGACACTGAGAGAACTGT..................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................ATCCTGGGGGCCGGGGGGCGA........................................................................................................................................................................................................................................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTTCTTTCTTTCTA.................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................GAAGTTCTTATACACTCA..................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTTCTTTCTTTCGA.................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................CAGTCTCAGCTGGAGGC................................................................................................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TCCAGGGAGGGGAGGGC........................................................................................................................................................................................................................................ | 17 | 7 | 0.29 | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | 0.14 |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTCTTTCTTTCTTA................................................... | 19 | 6 | 0.17 | 0.17 | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................CTTCATCCTGGGGGC.................................................................................................................................................................................................................................................................................................................................. | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAGGAAATCGAGACCTACCACAACCTCCTTGAGGGAGGCCAGGAAGACTTGTAGGTCCCCCAGGATTTGGTGGAACCCCTGGGGGTCCCTAGGCCTCTGATACTACTTCTGTCCCTCTGGATAGAGGCAGCTGGGGGAAGTTCTTATACACAGGGTCTTATGGGTTGAGGACTTCTTCATCCTGGGGGCCGGGGGGACCTCAGTGCATTTGGGCTTTGGGAAAGGAGGATGGTGACACTGAGAGAACGGGCTGCCTCCCTGCTCCAGGGAGGGGAGGGCTCCACAGTCTCAGCTGGAGGCTCTCCTCTCCCAGCTGTGGTGCCCGCCCAGACTCTGTCCTCTGCCTCCCAGGAAGGAAAACAGAAAGATTCATGTTTGGGTCCTGACTCTGTCCAGGTCCATCCTCATATATGTGTATGGGGGCCGCTCATTTTAACTCTCTTGTTTTCTTTCTTTCTTAGTGAATCCTCCGGAGCTGGAAAAATTGGCCTTGGAGGTCGAGGAGGAAGTG ..................................................(((((((((((((...((((.((....((((((....)))))))).))))..((.(((((((((....))))))))).))))))))))....)))))............................................................................................................................................................................................................................................................................................................................................................................ ..................................................51.................................................................................................150....................................................................................................................................................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR189784 | SRR189785 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR040035(GSM532920) G001T. (cervix) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330888(SRX091726) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR189787 | SRR330910(SRX091748) tissue: normal skindisease state: normal. (skin) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR040009(GSM532894) G727T. (cervix) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR040023(GSM532908) G575T. (cervix) | SRR037937(GSM510475) 293cand2. (cell line) | SRR040007(GSM532892) G601T. (cervix) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | TAX577589(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................................................................AGGGCTCCACAGTCTCAGCTGGAGGCTCTCCG............................................................................................................................................................................................................. | 32 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................................................................................................CTCTCCTCTCCCAGCTCCC................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTCCATCCTCATTG..................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................GCTGCCTCCCTGCTCCAAGCC................................................................................................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................CTTCATCCTGGGGGCCGGA.............................................................................................................................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................GACTCTGTCCTCTGCATA.................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................AGGGCTCCACAGTCTCAG........................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................................................................GGGTCCTGACTCTGTCCACTGG................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................................GGCTGCCTCCCTGCTATA..................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................CTTCATCCTGGGGGCCTGA.............................................................................................................................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................ACTTCTGTCCCTCTGTT...................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTCTTCATCCTGGGGCGCA................................................................................................................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............TCAAGGAGGTTGTGGTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |