ID: uc002hsj.2_intron_1_0_chr17_37829509_r
GENE: (6)
chr17:37829459-37829816-


(3)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(9)
BREAST
(14)
CELL-LINE
(13)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(13)
SKIN
(1)
UTERUS

Sense strand
CCTCATCCGCTTCGACTATGGCTACAACCTGGTGGCCAACGTGGCTATTGGTGAGGCCCTGGGGGGCTTGGGCCATCTGCAGAAGTGCTAGCTTGGGGTGCGAGTGGGAGGTTGGTGCCATTCCTGGAGAAGGAGGTTCTAGAGAGACTCTTGGGGTAGAGGAATGGAGAAGAATTTGAGGTGGGAGAGAGAGGAGGCTGGGAGGAGAGTCCGAGGATGATCCTGGGGTCAGAGAGCATGGAGTTGGGGGTGGCCTTGGGGAGAAGGAGCCGAAGGAATGAGTCTCTCCTGCCCCCACTGGCACCCAGGCCTGGTCAACGTGGTGTGGTGGCTGGCCTGGTGCCTGTGGAACCAGCGG
.......................................................((((..((.(((....)))....(((....)))...))..))))..((((......((((.(((..((((.....))))))).))))....))))................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040028(GSM532913)
G026N. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR191495(GSM715605)
159genomic small RNA (size selected RNA from . (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR040017(GSM532902)
G645T. (cervix)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040024(GSM532909)
G613N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
............................................................................................TTGGGGTGCGAGTGGTCCC.......................................................................................................................................................................................................................................................197.000.00-1.00-1.00--------------1.00-1.00-1.00---------1.00-------------------1.00-----
............................................................................................TTGGGGTGCGAGTGGTCC........................................................................................................................................................................................................................................................184.000.00----------1.00------------1.001.00------------------1.00--------------
.....................................................................................................................................................................................................................................................................................................CCCACTGGCACCCAGGCCTGGTC..........................................2313.003.00--3.00-------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................CCCACTGGCACCCAGGCCTGGTCT.........................................2413.003.00---------------1.00-------------1.00---------1.00------------------
..............................................................................................................................................................................................................................................................................................TCCTGCCCCCACTGGCACCCAGT.................................................232.000.00------1.001.00--------------------------------------------------
..............................................................................................................................................................................................................................................................................................TCCTGCCCCCACTGGCACCC....................................................2012.002.00-1.00------------------------------------1.00-------------------
........................................................................................TAGCTTGGGGTGCGAGTGGGAGGCTGG...................................................................................................................................................................................................................................................272.000.00--------2.00-------------------------------------------------
................................................................................................................................................................................................................................................................................................CTGCCCCCACTGGCACCCAGT.................................................212.000.00------1.00-------1.00-------------------------------------------
........................................................................................TAGCTTGGGGTGCGATAGG...........................................................................................................................................................................................................................................................192.000.00-------------------------------1.00--------------1.00-----------
..........................................................................................................................................................GGTAGAGGAATGGAGAAGAATTT.....................................................................................................................................................................................2311.001.00---------------------------------------------------1.00------
..........................................................................................GCTTGGGGTGCGAGTGGTCC........................................................................................................................................................................................................................................................201.000.00---------------------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................TGGTGTGGTGGCTGGCCTGGGGGC..............241.000.00------------------------------------------------1.00---------
..............................................................................................................................................................................................................................................................................................TCCTGCCCCCACTGGCACCCAGAAT...............................................251.000.00--------------------------------------------------1.00-------
...........................................................................................................................................................GTAGAGGAATGGAGAAGAATTTGAGG.................................................................................................................................................................................2611.001.00---------------------------------------------1.00------------
...........................................................................................................................................................................................................................................................................................................................................CTGGCCTGGTGCCTGTGGATT......211.000.00-------------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................CCTGCCCCCACTGGCACCCAGTT................................................231.000.00----------------------------------1.00-----------------------
...............................................................................................................................................................................................................................................................TTGGGGAGAAGGAGCTA......................................................................................171.000.00---------1.00------------------------------------------------
............................................................................................TTGGGGTGCGAGTGGTC.........................................................................................................................................................................................................................................................171.000.00-----------------------------------------1.00----------------
.................................................................................................................................................................GAATGGAGAAGAATTAGCT..................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................CTGGCCTGGTGCCTGTGGAT.......201.000.00-----------------------------------1.00----------------------
............................................................................................TTGGGGTGCGAGTGGTCCG.......................................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------------------
...........................................................................................CTTGGGGTGCGAGTGG...........................................................................................................................................................................................................................................................1611.001.00--------------------------------------------1.00-------------
.................................................................................................................GGTGCCATTCCTGGAGAAG..................................................................................................................................................................................................................................1911.001.00-----------1.00----------------------------------------------
.......................................................................................................................................................TGGGGTAGAGGAATGGAGAAGAATT......................................................................................................................................................................................2511.001.00---------1.00------------------------------------------------
....................................................................................................................................................................................GTGGGAGAGAGAGGAGGCACC.............................................................................................................................................................211.000.00-----------------------------------------------------1.00----
..............................................ATTGGTGAGGCCCTGTGTG.....................................................................................................................................................................................................................................................................................................191.000.00---1.00------------------------------------------------------
............................................................................................TTGGGGTGCGAGTGGTCT........................................................................................................................................................................................................................................................181.000.00----------------------------------------1.00-----------------
.......................................................................................................................................................................................................................GATGATCCTGGGGTCAGAGAGCATGGAGT..................................................................................................................2911.001.00-------------------------1.00--------------------------------
............................................................................................TTGGGGTGCGAGTGGTCGC.......................................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................GGTGCCTGTGGAACCAGCG.1911.001.00-------------------------------------------------------1.00--
.........................................................................................................................................................................AAGAATTTGAGGTGGAGTT..........................................................................................................................................................................191.000.00-----------------------------------------------1.00----------
..........................................................................................GCTTGGGGTGCGAGTG............................................................................................................................................................................................................................................................1611.001.00------------------------------------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................CTGGCCTGGTGCCTGTGGAA.......2011.001.00----------------------------1.00-----------------------------
..............................................................................................................................................................................................................................CTGGGGTCAGAGAGCATGGAGTTT................................................................................................................241.000.00---------------------------1.00------------------------------
...............................................................................................................................................................................................................................................................................................CCTGCCCCCACTGGCACCCAGA.................................................221.000.00-----------------1.00----------------------------------------
..................................................................................................................................................................................................................................................................GGGAGAAGGAGCCGACCT..................................................................................181.000.00----1.00-----------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GCTGGCCTGGTGCCTGTGGAAC......2211.001.00---------------------1.00------------------------------------
................................................................................................................................................................................................................................................................................................CTGCCCCCACTGGCACCCAGTT................................................221.000.00------------------------------------------1.00---------------
......................................................................................................................................................................................................................................................................................................................................GGTGGCTGGCCTGGTGCCT.............1911.001.00----1.00-----------------------------------------------------
............................................................................................TTGGGGTGCGAGTGGATAA.......................................................................................................................................................................................................................................................191.000.00------------------------------1.00---------------------------
..........................................................CTGGGGGGCTTGGGCCAT..........................................................................................................................................................................................................................................................................................1811.001.00------------------------------------------------------1.00---
.................................................................................................................................................................................................................................................................................................TGCCCCCACTGGCACCCAGT.................................................201.000.00-------------------------------------1.00--------------------
............................................................................................TTGGGGTGCGAGTGGTGCC.......................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------
..............................................................................................GGGGTGCGAGTGGGATAA......................................................................................................................................................................................................................................................181.000.00--------------------------1.00-------------------------------
............................................................................................TTGGGGTGCGAGTGGTAC........................................................................................................................................................................................................................................................181.000.00---1.00------------------------------------------------------
..................................................................................................................................AGGAGGTTCTAGAGATAA..................................................................................................................................................................................................................181.000.00-------------------1.00--------------------------------------
..............................................ATTGGTGAGGCCCTGTG.......................................................................................................................................................................................................................................................................................................171.000.00----------------1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GCTGGCCTGGTGCCTGTGGAAT......221.000.00-------1.00--------------------------------------------------
..............................GGTGGCCAACGTGGCTATT.....................................................................................................................................................................................................................................................................................................................1920.500.50----0.50-----------------------------------------------------
..............................................................................................................................................................................................................................................................CTTGGGGAGAAGGAGCC.......................................................................................1720.500.50--------------------------------------------------------0.50-
................................................................................................................................GAAGGAGGTTCTAGAG......................................................................................................................................................................................................................1630.330.33-----------0.33----------------------------------------------

Antisense strand
CCTCATCCGCTTCGACTATGGCTACAACCTGGTGGCCAACGTGGCTATTGGTGAGGCCCTGGGGGGCTTGGGCCATCTGCAGAAGTGCTAGCTTGGGGTGCGAGTGGGAGGTTGGTGCCATTCCTGGAGAAGGAGGTTCTAGAGAGACTCTTGGGGTAGAGGAATGGAGAAGAATTTGAGGTGGGAGAGAGAGGAGGCTGGGAGGAGAGTCCGAGGATGATCCTGGGGTCAGAGAGCATGGAGTTGGGGGTGGCCTTGGGGAGAAGGAGCCGAAGGAATGAGTCTCTCCTGCCCCCACTGGCACCCAGGCCTGGTCAACGTGGTGTGGTGGCTGGCCTGGTGCCTGTGGAACCAGCGG
.......................................................((((..((.(((....)))....(((....)))...))..))))..((((......((((.(((..((((.....))))))).))))....))))................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040028(GSM532913)
G026N. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR191495(GSM715605)
159genomic small RNA (size selected RNA from . (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR040017(GSM532902)
G645T. (cervix)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040024(GSM532909)
G613N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................AGAGGAATGGAGAAGAGCTT..................................................................................................................................................................................... 201.000.001.00---------------------------------------------------------
..............................................................................................................................................................GAGGAATGGAGAAGAGGCC..................................................................................................................................................................................... 191.000.001.00---------------------------------------------------------
.............................................................................................................................................................AGAGGAATGGAGAAGAGAT...................................................................................................................................................................................... 191.000.001.00---------------------------------------------------------
................................................................................................................................................................CAAATTCTTCTCCATTCC.................................................................................................................................................................................... 1811.001.001.00---------------------------------------------------------
............................................................................................................................................................TAGAGGAATGGAGAAGATTT...................................................................................................................................................................................... 201.000.001.00---------------------------------------------------------
..............................................................................................................................................................GAGGAATGGAGAAGAGGCT..................................................................................................................................................................................... 191.000.001.00---------------------------------------------------------
.....................................................................................................................................................................................................................................................................AGAAGGAGCCGAAGGAGGG.............................................................................. 191.000.00------------1.00---------------------------------------------
...........................................................................................................................................................................................................................................CCACCCCCAACTCCATGC......................................................................................................... 1830.330.33----------0.33-----------------------------------------------
...............................................................................AAGCTAGCACTTCTG........................................................................................................................................................................................................................................................................ 1580.120.12---------------------------------------------------------0.12