uc002hon.1_intron_4_0_chr17_36233932

GGGGAAATGATTAAGAATGCTTTTTCTAGTAGTGGTTTGAGTATCCTCAAGCAATGGAAGTAAGACAGCAATGAGAATTTGTTAATGTCCTTGTTATGCATTTGTTTCAATAGACATTGTAGGGATCTGTTAAGGAAATTAATGATGTTAATTTGCTTTTGATAAAACTGAAAAGATGACATTTATTTATTTATTTTTAGGCTGGGCCCATGAGGTGTGTGCTCTGTATATTCCGGAGGTACAATTTGCC ............................................................................................................................(((....(((.((((((((...)))))))).)))..)))....((((((((((((.......)))))..))))))).................................................. ............................................................................................................................125........................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189784	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	TAX577739(Rovira) total RNA. (breast)	SRR037932(GSM510470) 293cand4_rep1. (cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR189785
..................................................................................................................................................................................ACATTTATTTATTTATTTTTCG..................................................	22		81.00	0.00	46.00	21.00	9.00	5.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTCACG...................................................	21		4.00	0.00	-	-	2.00	2.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTCTTG..................................................	22		4.00	0.00	-	-	4.00	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTCATG................................................	24		3.00	0.00	-	2.00	-	1.00	-	-	-	-	-	-	-
...................................................................................................................................................................................CATTTATTTATTTATTTTCTAG.................................................	22		2.00	0.00	-	-	-	2.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTCTTG...................................................	21		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTCG...................................................	21		2.00	0.00	-	-	-	-	-	2.00	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTCTTG.................................................	23		2.00	0.00	-	-	-	-	1.00	-	1.00	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTCATG...................................................	21		2.00	0.00	-	-	1.00	1.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTCACG................................................	24		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTAGGCTGGGCCC.........................................	31	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-
........GATTAAGAATGCTTTTGAT...............................................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-
..............................................................................................................................................................................................TTATTTTTAGGCTGGGAAGA........................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTCA..................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................TTAAGGAAATTAATGAAAAG.....................................................................................................	20		1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTCTCG..................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
..........................TAGTAGTGGTTTGAGCCTA.............................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-
...................................................................................................................................................................................CATTTATTTATTTATTGTGG...................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTCAAG................................................	24		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTCTCG...................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTGAGC................................................	24		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-
..................................................................................................................................................................................ACATTTATTTATTTATTTTTAG..................................................	22	6	0.67	0.67	0.17	0.17	-	-	-	-	-	-	-	-	0.33

GGGGAAATGATTAAGAATGCTTTTTCTAGTAGTGGTTTGAGTATCCTCAAGCAATGGAAGTAAGACAGCAATGAGAATTTGTTAATGTCCTTGTTATGCATTTGTTTCAATAGACATTGTAGGGATCTGTTAAGGAAATTAATGATGTTAATTTGCTTTTGATAAAACTGAAAAGATGACATTTATTTATTTATTTTTAGGCTGGGCCCATGAGGTGTGTGCTCTGTATATTCCGGAGGTACAATTTGCC
............................................................................................................................(((....(((.((((((((...)))))))).)))..)))....((((((((((((.......)))))..)))))))..................................................
............................................................................................................................125........................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

TAX577739(Rovira)
total RNA. (breast)

SRR037932(GSM510470)
293cand4_rep1. (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR189785

..................................................................................................................................................................................ACATTTATTTATTTATTTTTCG..................................................

81.00

0.00

46.00

21.00

9.00

5.00

..................................................................................................................................................................................ACATTTATTTATTTATTCACG...................................................

4.00

0.00

2.00

..................................................................................................................................................................................ACATTTATTTATTTATTTCTTG..................................................

4.00

0.00

4.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTCATG................................................

3.00

0.00

2.00

1.00

...................................................................................................................................................................................CATTTATTTATTTATTTTCTAG.................................................

2.00

0.00

2.00

..................................................................................................................................................................................ACATTTATTTATTTATTCTTG...................................................

2.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTCG...................................................

2.00

0.00

2.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTCTTG.................................................

2.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTCATG...................................................

2.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTCACG................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTAGGCTGGGCCC.........................................

1.00

........GATTAAGAATGCTTTTGAT...............................................................................................................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................................................................................TTATTTTTAGGCTGGGAAGA........................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTCA..................................................

1.00

0.00

1.00

.................................................................................................................................TTAAGGAAATTAATGAAAAG.....................................................................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTCTCG..................................................

1.00

0.00

1.00

..........................TAGTAGTGGTTTGAGCCTA.............................................................................................................................................................................................................

1.00

0.00

1.00

...................................................................................................................................................................................CATTTATTTATTTATTGTGG...................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTCAAG................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTCTCG...................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTGAGC................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACATTTATTTATTTATTTTTAG..................................................

0.67

0.17

0.33