ID: uc002hhj.3_intron_0_0_chr17_30677346_f.3p
GENE: (1)
chr17:30678605-30678854+


(2)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
OTHER 		(19)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
AGCTGGCCTTCTAGGAAATTGAAAATACTGAAATAACATGGCAAGTGTAGTCCCTAATTGTGTAATAAATATAAAAAGCAGAGTTTCTATACAGTACCATTTTGGTTTTAGCTGTTCCCATATTGTAATGTTATCCATATGTTTTTATTATAGGCAGTGTCATCATTAGGCTGTCTTTGTGCCTTAACAGTATTGATCAGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAGCACCAAA
...........................................................................................................................................((((........(((((((...........))))))).........)))).............................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGA.................................................23150.0011.0033.005.00-2.00--3.00-----1.001.00---1.00-1.00-------1.00--------1.00-----1.00----
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGA.................................................22111.0010.004.003.00-1.00----------------------------1.00--------1.00--1.00--
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAG..................................................22111.0011.004.00-------1.002.00------------1.00---------------1.001.00---1.00---
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAG..................................................21110.0010.008.001.00---------------------1.00-----------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGT.................................................2319.0011.005.003.00-------------1.00-------------------------------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGT.................................................2218.0010.001.00---6.00--------------------------------1.00---------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGAA................................................2416.0011.005.00---------------------------1.00------------------
...............................................................................................................................................TTTATTATAGGCAGTGTCATCATTAGGCTGTCTTTGTGCCTTAACAGTATTGATCAG..................................................5716.006.00--6.00--------------------------------------------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGAG................................................2315.0010.003.002.00---------------------------------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCA...................................................2115.005.001.004.00---------------------------------------------
....................................................................................................................................................................................GCCTTAACAGTATTGATCAGG.................................................2115.005.00-5.00---------------------------------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGG.................................................2314.004.003.00--------------------------------1.00-------------
.............................................................................................................................................................................................GTATTGATCAGGTATTGTAATAGAGATT.................................2814.004.004.00----------------------------------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGAG................................................2413.0011.003.00----------------------------------------------
.................................................................................................................................................................................TGTGCCTTAACAGTATTGATCAG..................................................2312.002.001.00-------1.00--------------------------------------
............................TGAAATAACATGGCAAGTGTAG........................................................................................................................................................................................................2212.002.002.00----------------------------------------------
.................................................................................................................................................................................................................TAGAGATTTTGATGATGAGAAGATC................2512.002.00-----2.00-----------------------------------------
.......CTTCTAGGAAATTGAAAATACT.............................................................................................................................................................................................................................2212.002.00----------2.00------------------------------------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGAA................................................2312.0010.001.00----------------------------------1.00-----------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCA...................................................2011.001.001.00----------------------------------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGAGA...............................................2511.0011.00-1.00---------------------------------------------
...........................................................................................................................................................................................................TTGTAATAGAGATTTTGATGATGAGAAGAT.................3011.001.00---------------------------------------------1.00-
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGGTA...............................................2511.001.00--------------------1.00--------------------------
..............................................................................................................................................TTTTATTATAGGCAGTGTCAAG......................................................................................221.000.001.00----------------------------------------------
........................................................................................................................................................................................................................TTTGATGATGAGAAGATC................1811.001.00-----------1.00-----------------------------------
...........................................................................................................................................................................TGTCTTTGTGCCTTAACAGTATTGATCAG..................................................2911.001.00---1.00-------------------------------------------
......................................................................................................................................................TAGGCAGTGTCATCAGC...................................................................................171.000.00------------------------1.00----------------------
................................................................................................................................................................................................................ATAGAGATTTTGATGATGAGAAGATC................2611.001.00-------1.00---------------------------------------
..................................................................................................ATTTTGGTTTTAGCTGTTCC....................................................................................................................................2011.001.00---------------------1.00-------------------------
......................................................................................................................................................................................................................ATTTTGATGATGAGAAGA..................1811.001.00----------------1.00------------------------------
..............................................................................................................................................................................................................TAATAGAGATTTTGATGATGAGAAGATC................2811.001.00-------1.00---------------------------------------
....................................................................................................TTTGGTTTTAGCTGTATGA...................................................................................................................................191.000.00------------------1.00----------------------------
..............................................................................................................................................................................................................TAATAGAGATTTTGATGATGAGAAGA..................2611.001.00-----1.00-----------------------------------------
..................................................................................................................................................................................................................AGAGATTTTGATGATGAGAAGA..................2211.001.00-------------------------------1.00---------------
..............................................................................................................................................................................................................TAATAGAGATTTTGATGAT.........................1911.001.00----------------------------------1.00------------
....GGCCTTCTAGGAAATTGAAAATACTGA...........................................................................................................................................................................................................................2711.001.00-----------------------------1.00-----------------
......................................TGGCAAGTGTAGTCCCTAA.................................................................................................................................................................................................1911.001.00----------------------------------------1.00------
..............................AAATAACATGGCAAGGGAC.........................................................................................................................................................................................................191.000.00--------------1.00--------------------------------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGTT................................................2311.0010.001.00----------------------------------------------
.................................................................................................................................................................................TGTGCCTTAACAGTATTGATCAGA.................................................2411.002.00---1.00-------------------------------------------
..................................AACATGGCAAGTGTAGTCCCTAATTG..............................................................................................................................................................................................2611.001.00--1.00--------------------------------------------
...................................................................................................................................................................................TGCCTTAACAGTATTGATCAGAT................................................2311.0010.00---1.00-------------------------------------------
......................................................................................................................................................................................................................ATTTTGATGATGAGAAGATCC...............2111.001.00--------------------------1.00--------------------
..................................................................................................................................................................................GTGCCTTAACAGTATTGATCAGAAA...............................................2511.0011.001.00----------------------------------------------
..................................................................................................ATTTTGGTTTTAGCTGGTTG....................................................................................................................................201.000.00------------------------------1.00----------------
...............................................................................................................................................................................................................AATAGAGATTTTGATGATGAGAAGATC................2711.001.001.00----------------------------------------------
.........................................................................................................................................................................................................................TTGATGATGAGAAGAT.................1650.200.20----------------------------------------------0.20

Antisense strand
AGCTGGCCTTCTAGGAAATTGAAAATACTGAAATAACATGGCAAGTGTAGTCCCTAATTGTGTAATAAATATAAAAAGCAGAGTTTCTATACAGTACCATTTTGGTTTTAGCTGTTCCCATATTGTAATGTTATCCATATGTTTTTATTATAGGCAGTGTCATCATTAGGCTGTCTTTGTGCCTTAACAGTATTGATCAGGTATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAGCACCAAA
...........................................................................................................................................((((........(((((((...........))))))).........)))).............................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................GTGTAATAAATATAAAAATT........................................................................................................................................................................... 201.000.00-------------------------1.00---------------------