ID: uc002heg.2_intron_15_0_chr17_27908855_r
GENE: GIT1(5)
chr17:27908805-27908994-


(2)
AGO2.ip
(2)
B-CELL
(5)
BRAIN
(12)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(4)
HEART
(7)
LIVER
(1)
OTHER
(20)
SKIN
(1)
XRN.ip

Sense strand
GACCCTGGCTCCCCTGATGTTAATGGCCGCACACCCATTGACTATGCCAGGTGAGGGTCGGCTGAAGGGTGCAGTGTGGGTGGGTGGGGGTGTGGGTGAGGGCTGCTGCTGCAGGTCTGAGCCATACCCCCTCCTCACAGGCAGGCGGGGCACCATGAGCTGGCGGAAAGGCTGGTTGAGTGCCAATATG
...............................................................................(((((.((((((((((...(((.((((....)))).)))...)))))))))).)).)))....................................................
...............................................................................80..........................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040023(GSM532908)
G575T. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
...................................................................................................................TCTGAGCCATACCCCCTCCTCA.....................................................22117.0017.00--2.004.00--2.00--1.00--------1.00---------1.00-----1.00--1.00------1.00-----1.00--1.00-----1.00----------------
...................................................................................................................TCTGAGCCATACCCCCTCCTC......................................................2114.004.00---1.00--------1.00-1.00----------------------------------------1.00--------------------
......................................................................................................................GAGCCATACCCCCTCCTCACAGA.................................................233.000.00--3.00-------------------------------------------------------------------------
.......................................................................................................................AGCCATACCCCCTCCTCACAGA.................................................222.000.00---1.00-----------1.00------------------------------------------------------------
...................................................................................................................................................................CGGAAAGGCTGGTTGAGTGC.......2012.002.00--------------------------------1.00-----1.00-------------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCAT....................................................2312.0017.00-1.00----------------------------------------1.00---------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCT.......................................................2012.002.00---------1.00-----------------1.00------------------------------------------------
....................................................................................................................CTGAGCCATACCCCCTCCTCACAGAA................................................262.000.00----2.00-----------------------------------------------------------------------
.................................................................................................................GGTCTGAGCCATACCCCCTCCTA......................................................232.000.00-2.00--------------------------------------------------------------------------
......................................................................................................................GAGCCATACCCCCTCCTCACAGT.................................................232.000.00--------2.00-------------------------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCAAAG..................................................2511.0017.00-------------1.00--------------------------------------------------------------
...............................CACCCATTGACTATGCCAG............................................................................................................................................1911.001.00-------------------------------1.00--------------------------------------------
.......................................................................................................................AGCCATACCCCCTCCTCACAGT.................................................221.000.00----------------------------------------1.00-----------------------------------
.................................................................................................................................................................GGCGGAAAGGCTGGTTGAGTGC.......2211.001.00----------------------------------------------------------1.00-----------------
...................................................................................................................TCTGAGCCATACCCCCTT.........................................................181.000.00---------------------------------1.00------------------------------------------
...................................................................................................................................................................CGGAAAGGCTGGTTGAGTG........1911.001.00------------------------------------1.00---------------------------------------
..........................................................................................................................................................ATGAGCTGGCGGAAAGGC..................1811.001.00--------------------------------------------------------1.00-------------------
.................................................................................................................GGTCTGAGCCATACCCCCT..........................................................1911.001.00---------------------------------------------------------1.00------------------
....................................................................................TGGGGGTGTGGGTGAGGGCTGCTG..................................................................................2411.001.00----------------------------------------------1.00-----------------------------
...........CCCTGATGTTAATGGAGC.................................................................................................................................................................181.000.00-----------------------1.00----------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCC...........................................................1611.001.00-----------------------------------------1.00----------------------------------
..........CCCCTGATGTTAATGGCCGCACACCCAT........................................................................................................................................................2811.001.00---------------------------------------1.00------------------------------------
.......................................................................................................................AGCCATACCCCCTCCTCATTGT.................................................221.000.00----------------------------------------------------1.00-----------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCTT....................................................2311.004.00-1.00--------------------------------------------------------------------------
.................................................................................................................................................................GGCGGAAAGGCTGGTTGAGT.........2011.001.00---------------------------------------------------1.00------------------------
...................................................................................................................................................GGGCACCATGAGCTGGCGGAAAGGC..................2511.001.00--------------------1.00-------------------------------------------------------
...........................................................................................................GCTGCAGGTCTGAGCCATACCCCCTC.........................................................2611.001.00----------1.00-----------------------------------------------------------------
...............................CACCCATTGACTATGCCAGGTGAGGGTCGGC................................................................................................................................3111.001.00------------------------------------------------1.00---------------------------
.........................................................................GTGTGGGTGGGTGGGGGGGCG................................................................................................211.000.00----------------1.00-----------------------------------------------------------
......................................................................................................................................TCACAGGCAGGCGGGGCAAGAA..................................221.000.00--1.00-------------------------------------------------------------------------
........................................................................................................GCTGCTGCAGGTCTGAGCCATACCCC............................................................2611.001.00-------------------1.00--------------------------------------------------------
.......................................................................................................................................................ACCATGAGCTGGCGGAAA.....................1811.001.00------------------------------1.00---------------------------------------------
..........................................................................................................................................................ATGAGCTGGCGGAAAAAAA.................191.000.00------------------------------------------------------------1.00---------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCAC....................................................2311.001.00-1.00--------------------------------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCACAGA.................................................261.000.00-----------------------------1.00----------------------------------------------
............................................................................................................................................................GAGCTGGCGGAAAGGCTGG...............1911.001.00-----------------------------------1.00----------------------------------------
..........................................................................................................................................................ATGAGCTGGCGGAAAGGCT.................1911.001.00----------1.00-----------------------------------------------------------------
.......................................................................................................................................................ACCATGAGCTGGCGGAAAGGCT.................2211.001.00--------------------------1.00-------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCT.....................................................2211.004.00---------------------1.00------------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCCTCCTCATAAA.................................................2611.0017.00-----------------------------------------------1.00----------------------------
.....................................................................................................................TGAGCCATACCCCCTCCTCACAGT.................................................241.000.00-------------------------1.00--------------------------------------------------
.....................................................................................................................TGAGCCATACCCCCTCCTCACAGA.................................................241.000.00----1.00-----------------------------------------------------------------------
......................................................................................................................................................................AAAGGCTGGTTGAGTGCCG.....191.000.00-1.00--------------------------------------------------------------------------
..........................................................................................................................................................ATGAGCTGGCGGAAAGGCTGG...............2111.001.00-------------------------------------------------------------1.00--------------
.............................................................................................................................................................AGCTGGCGGAAAGGC..................1530.330.33-----------0.33----------------------------------------------------------------
..........................................................................................................................................AGGCAGGCGGGGCACC....................................1640.250.25----------------0.25-----------------------------------------------------------
....................................................................................TGGGGGTGTGGGTGAGGG........................................................................................1870.140.14-----0.14----------------------------------------------------------------------

Antisense strand
GACCCTGGCTCCCCTGATGTTAATGGCCGCACACCCATTGACTATGCCAGGTGAGGGTCGGCTGAAGGGTGCAGTGTGGGTGGGTGGGGGTGTGGGTGAGGGCTGCTGCTGCAGGTCTGAGCCATACCCCCTCCTCACAGGCAGGCGGGGCACCATGAGCTGGCGGAAAGGCTGGTTGAGTGCCAATATG
...............................................................................(((((.((((((((((...(((.((((....)))).)))...)))))))))).)).)))....................................................
...............................................................................80..........................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040023(GSM532908)
G575T. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
....................................................................................................................CTGAGCCATACCCCCTGG........................................................ 186.000.001.00-----------0.50-0.50-------0.50---------------------------------------0.500.50-0.50----0.500.500.50--0.50
....................................................................................................................CTGAGCCATACCCCCTG......................................................... 173.500.002.00------------0.50-----------------------------------------------------0.50------0.50-
....................................................................................................................GGGGGTATGGCTCAG........................................................... 1523.003.001.00--------------0.50--------------------------------------------------0.50--0.50---0.50--
....................................................................................................................CTGAGCCATACCCCCTGGT....................................................... 192.500.002.00---------------------0.50-----------------------------------------------------
..........................................................................................................................CATACCCCCTCCTCATA................................................... 172.000.00-------1.00-----------------------------------1.00--------------------------------
....................................................................................................................CTGAGCCATACCCCCGG......................................................... 171.500.00-----------1.50----------------------------------------------------------------
....................................................................................................................CTGAGCCATACCCCCT.......................................................... 161.500.001.50---------------------------------------------------------------------------
..........................................................................................................................CATACCCCCTCCTCATTT.................................................. 181.000.00------------------------1.00---------------------------------------------------
..........................................................................................................................CATACCCCCTCCTCATAT.................................................. 181.000.00-------1.00--------------------------------------------------------------------
..........................................................................................................................CATACCCCCTCCTCATTTT................................................. 191.000.00-------------------------------------------------1.00--------------------------
...............................................................................GTGGGTGGGGGTGTGGGGCAA.......................................................................................... 211.000.00---------------------------------------------1.00------------------------------
....................................................................................................................CTGAGCCATACCCCCTG......................................................... 171.000.00-----------------1.00----------------------------------------------------------
..........................................................................................................................CATACCCCCTCCTCATTTA................................................. 191.000.00------------------------------------------------------1.00---------------------
...................................................................................................................TCTGAGCCATACCCCCGGT........................................................ 1911.000.00-----1.00----------------------------------------------------------------------
...................................................................................................................TCTGAGCCATACCCCCGA......................................................... 1811.000.00-----1.00----------------------------------------------------------------------
....................................................................................................................CTGAGCCATACCCCCTGGG....................................................... 190.500.00-----0.50----------------------------------------------------------------------
....................................................................................................................CTGAGCCATACCCCCGGG........................................................ 180.500.00--------------------------------------------------------------------0.50-------
....................................................................................................................CTGAGCCATACCCCCGTGG....................................................... 190.500.00----------------------------------------------------------------0.50-----------