ID: uc002hcs.4
GENE: TRAF4(5)
chr17:27075392-27075578+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(17)
BREAST 		(31)
CELL-LINE 		(1)
FIBROBLAST 		(7)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189782DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................TGGGTTGCAGGGTAGGTGACA................................................................................................21125.0025.00----2.001.00-4.00---1.00-2.00-----------2.001.00-1.00---1.00-2.00---------1.00--1.00----------------1.00-------1.00---1.00-------1.001.00----1.00------
..........................................................................TTGCAGGGTAGGTGACAGGTAG...........................................................................................22114.0014.0012.00----------------1.00-----1.00-------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTG.........................................................80110.0010.00-6.00-4.00---------------------------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAG...........................................................................................2118.008.002.00----1.001.00----------------------2.00--------------------------------1.00-----1.00----------------------------
......................................................................TGGGTTGCAGGGTAGGTGA..................................................................................................1918.008.00----1.00----1.00---1.00-----1.00------1.00-----1.00--------1.00----1.00--------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAT..................................................2316.003.00--4.00------------------------------------------------------------------------1.00----------1.00----------
..................................................................................................................CCTCTCTACTTCTGTGGCC......................................................1915.005.00------1.00-------1.00---------------------------1.00-----------1.00--------------1.00---------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGG........................................................2315.005.00----------------3.00--------------------------------------1.00--------------------------------1.00--------
..........................................................................TTGCAGGGTAGGTGACAGGTAGA..........................................................................................2315.0014.004.00--------1.00---------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAA..................................................2314.003.00----------4.00--------------------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCC.....................................................8413.003.00-3.00-----------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTG...................................................................................................2013.003.00---------1.00--------------2.00------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTA............................................................................................2013.003.001.00-----------------1.00--------------1.00---------------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACAC................................................................................................................................................2013.003.00------------3.00------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCA...................................................2213.003.00--------------1.00------2.00---------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCATT.................................................2413.003.00--1.00--------------------------------------------------------------------------------1.00-----1.00-------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGT.................................................2413.001.00------1.00-------1.00-----------------------------------------------------------1.00----------------------
......................................................................TGGGTTGCAGGGTAGGTGAC.................................................................................................2013.003.00-----------------2.00---------------------------------------------------------------1.00---------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGT..........................................................................................2313.003.002.00------------------1.00-----------------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTT...............................................................................................................2612.002.001.00-----------------------------------------------1.00------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGACA................................................................................................2312.002.00--------1.00--1.00-------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAA...............................................................................................2212.0025.00-----1.00--1.00----------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGAAA................................................................................................2112.008.00-----2.00-------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGA..................................................................................................2112.002.00----1.00----------------------------------------------------------------------------------1.00---------
....................................................................TGTGGGTTGCAGGGTAGGTGAC.................................................................................................2212.002.00--2.00----------------------------------------------------------------------------------------------
...............................................................................................................CTGCCTCTCTACTTCTGTGGC.......................................................2112.002.002.00------------------------------------------------------------------------------------------------
...............................................................TGAACTGTGGGTTGCAGGGTAGG.....................................................................................................2312.002.00----------------------1.00-----------------------------1.00--------------------------------------------
........................AGGAGTTCGTCTTTGACACCA..............................................................................................................................................2112.002.00------------1.00-----1.00------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAG...........................................................................................2612.002.001.00----------------------------------------------------------------1.00-------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCC......................................................8312.002.00---2.00---------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGT..............................................................................................231.000.00---------------------------------------------------------------1.00---------------------------------
....................................................................TGTGGGTTGCAGGGTAAA.....................................................................................................181.000.00-----------1.00-------------------------------------------------------------------------------------
.......................AAGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2311.001.00-------------------------------------------------------------------------------1.00-----------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCCA..................................................2311.001.00--------1.00----------------------------------------------------------------------------------------
........................AGGAGTTCGTCTTTGACACCAT.............................................................................................................................................2211.001.00----------------------------------------1.00--------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGATT................................................................................................2111.008.00----1.00--------------------------------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGACAGG..............................................................................................2511.001.00--------------------------------------------------------1.00----------------------------------------
..............................................................................................................CCTGCCTCTCTACTTCTGTGG........................................................2111.001.00---------------------------1.00---------------------------------------------------------------------
..................................................GTGAGGCCTTCCCTGAACTGTGGG.................................................................................................................2411.001.00----------------------1.00--------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTG...................................................................................................1811.001.00--------------------1.00----------------------------------------------------------------------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTA.........................................................................................2411.003.00-----------1.00-------------------------------------------------------------------------------------
...................................................................CTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAG.......................................................................................3311.001.00--------------------------------------------------1.00----------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGA..........................................................................................2211.008.001.00------------------------------------------------------------------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCC..........3311.001.00--------------------------------------------------------------------------------1.00----------------
...................................................................................AGGTGACAGGTAGTCAGGATAT..................................................................................2211.001.00------------------------------------------------------------1.00------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTTT........................................................231.000.00--------1.00----------------------------------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTG.........................................................2211.001.00-----------------------------------------------------------------------1.00-------------------------
....................................................................................................................TCTCTACTTCTGTGGCCCCAG..................................................2111.001.001.00------------------------------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTAGTC.........................................................................................2811.001.00-------------------------------------------------------------------1.00-----------------------------
.............................................................................................................TCCTGCCTCTCTACTTCTGTGGC.......................................................2311.001.00-----------------------------------------------------------------------------1.00-------------------
.......................AAGGAGTTCGTCTTTGACACCATCCA..........................................................................................................................................2611.001.00---------------------------------------------------1.00---------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGGTGAAT................................................................................................2311.002.00----------------------------------------------------------------------------------1.00--------------
..........................................................................TTGCAGGGTAGGTGACAGGTAGTCA........................................................................................2511.001.00---------------------------------------------------------1.00---------------------------------------
...............ACTGCACTAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2911.001.00-------------------------------1.00-----------------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGA.......................................................2411.005.00-------------------------------------------------------------------------1.00-----------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCTTT...................................................2211.005.00------1.00------------------------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGCAGT..........................................................................................221.000.001.00------------------------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGA.................................................2411.001.00-------------------------------------------1.00-----------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCC.....................................................2011.001.00---------------------------1.00---------------------------------------------------------------------
....................................................................TGTGGGTTGCAGGGTAGG.....................................................................................................1811.001.00-------------------------------------------------1.00-----------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCC....................................................2111.001.00---------------------------------1.00---------------------------------------------------------------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCTG...........................................................2711.001.00---------------1.00---------------------------------------------------------------------------------
................................GTCTTTGACACCATCCAG.........................................................................................................................................1821.001.00-------------------------------------------------------------------------------------------0.50-0.50---
................................................................................................................................................AGTACCAGTGCCCAAGGCTGCCTG...................2411.001.00------------------------------1.00------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAG..................................................2311.001.00----------------------------------------------------------------------1.00--------------------------
......................TAAGGAGTTCGTCTTTGACACC...............................................................................................................................................2211.001.00-----------------------------------------------------------1.00-------------------------------------
.....................................................................GTGGGTTGCAGGGTAGGTGACAG...............................................................................................2311.001.00--------------------1.00----------------------------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAT...............................................................................................2211.0025.00------------------------------------------------------------------------------1.00------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAGC.................................................2411.001.00------------------------------------1.00------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGATA............................................................................................201.000.00------------------1.00------------------------------------------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAA.................................................2411.003.00----------------------------------------------------------1.00--------------------------------------
................................................................................................................................................AGTACCAGTGCCCAAGG..........................1711.001.00---------------------------------------------1.00---------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGT..........................................................................................2211.001.00-----------------------1.00-------------------------------------------------------------------------
...........................................................................TGCAGGGTAGGTGACAGGTAGTC.........................................................................................2311.001.00--1.00----------------------------------------------------------------------------------------------
............................................................................GCAGGGTAGGTGACAGGTAGT..........................................................................................2111.001.00----------------------------1.00--------------------------------------------------------------------
.....................................................................................................ATATTGACTCCTGCCTCTCTACTTCT............................................................2611.001.00---------------1.00---------------------------------------------------------------------------------
.....................CTAAGGAGTTCGTCTTTGACACCATCC...........................................................................................................................................2711.001.00-------------------------------1.00-----------------------------------------------------------------
.................................................................................GTAGGTGACAGGTAGTC.........................................................................................1711.001.00-----------------------------------------------------1.00-------------------------------------------
..................................................................................................................CCTCTCTACTTCTGTGGCCCCAAT.................................................2411.003.00-------------------------------------1.00-----------------------------------------------------------
............................................................................................................CTCCTGCCTCTCTACTTCTGTGGC.......................................................2411.001.00--------------------------------------1.00----------------------------------------------------------
......................................................................TGGGTTGCAGGGTAGGTGACAGGTA............................................................................................2511.001.00---------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................CTGTTGCCTGCCCCAACC....1820.500.50--------------------------------------------------------------------------------------------0.50----
..................................................................................................................CCTCTCTACTTCTGTGG........................................................1730.330.33------0.33------------------------------------------------------------------------------------------
....................................................................................................GATATTGACTCCTGCC.......................................................................1630.330.33----------------------------------------------------------------------------------------------0.33--

Antisense strand
CTCAGCCCTGCACCTACTGCACTAAGGAGTTCGTCTTTGACACCATCCAGGTGAGGCCTTCCCTGAACTGTGGGTTGCAGGGTAGGTGACAGGTAGTCAGGATATTGACTCCTGCCTCTCTACTTCTGTGGCCCCAGAGCCACCAGTACCAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAACCAATG
...................................................................(((.((((..(((((((((.((((((.((((((....))))))))))..)))))))).)))..)))))))..................................................
.................................................................66.....................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189782DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................GTGCCCAAGGCTGCCTGTTGCCTGCCCCAACGG... 331.000.00------------------------------1.00------------------------------------------------------------------
...............................................................................................................................................................GGCTGCCTGTTGCCTG............ 161.000.00------------------------------------------------------------------1.00------------------------------
................................................................................................................................................AGTACCAGTGCCCAATGGG........................ 191.000.00---------------------------------------1.00---------------------------------------------------------
................CTGCACTAAGGAGTTCGGA........................................................................................................................................................ 191.000.00---------------1.00---------------------------------------------------------------------------------
..........................................................................................AGGTAGTCAGGATATCTG............................................................................... 181.000.00-------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................CTGGTACTGGTGGCTCTGGGG................................... 2111.001.00-----------------------------------1.00-------------------------------------------------------------
.....................................................................................................................................CTGGTACTGGTGGCTCTGG................................... 1920.500.50-----------------------------------0.50-------------------------------------------------------------
......................................................................................................................GGGGCCACAGAAGTAGA.................................................... 1730.330.33-----------------------------------------------------------------------------------------------0.33-
.............TCCTTAGTGCAGTAG............................................................................................................................................................... 1570.140.14------------------------------------------------------------------------------------------------0.14