ID: uc002hby.2_intron_21_0_chr17_27014244_f
GENE: (22)
chr17:27014194-27014371+


(1)
B-CELL 		(2)
BRAIN 		(9)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(3)
HELA 		(7)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TGTGCAGTTCCGATGAAGACATCCTGTGTCTCAAGTTTCACCCCTTGCAGGTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAATGTCCACAGGAGCATGTGGTGAAAGAGGAGCTGCTCAACGCCTTGTACTGTGAATTTAT
......................................................((.((((......(((((((..(((((.(((..............))))))))..)))))))....))))))....................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029124(GSM416753)
HeLa. (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925PAZD5SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAA...........................................................69111.0011.0011.00--------------------------------------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAATGTCC......................................................74111.0011.0011.00--------------------------------------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAATGTCCAATTT.................................................797.000.007.00--------------------------------------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAATGTCCACAG..................................................7815.005.004.001.00-------------------------------------
..................................................GTGAGTAGGATTTGACAGGCAGGCT.......................................................................................................2514.004.00-------2.002.00------------------------------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGC...............................................................6513.003.00-3.00-------------------------------------
.....................................................................................................................................TGTGGTGAAAGAGGAGCTGCTCAACG...................2612.002.00-----2.00---------------------------------
..................................................................................................................................GCATGTGGTGAAAGAGGAG.............................1912.002.00--------------------------1.00--------1.00---
.....................................................................................................TTACTCCTGCCTGCTGAATGTCCT.....................................................242.000.00----2.00----------------------------------
.............................................................................................................................CAGGAGCATGTGGTGAAAGAGG...............................2211.001.00------------------------------------1.00--
..................................................GTGAGTAGGATTTGACAGGCA...........................................................................................................2111.001.00---------------------------1.00-----------
....................ATCCTGTGTCTCAAGTTTCACCCCT.....................................................................................................................................2511.001.00------------------1.00--------------------
.........................................CCCTTGCAGGTGAGTAGGATTTGACAGGCAG..........................................................................................................3111.001.00----------------------1.00----------------
..............................................................................................................................................AGAGGAGCTGCTCAACGCCTTGTACTGTG.......2911.001.00---1.00-----------------------------------
........................TGTGTCTCAAGTTTCACC........................................................................................................................................1811.001.00---------1.00-----------------------------
............................................................................................................................................AAAGAGGAGCTGCTCAACGCCTTG..............2411.001.00------1.00--------------------------------
.GTGCAGTTCCGATGAAGACA.............................................................................................................................................................2011.001.00------1.00--------------------------------
..................................................GTGAGTAGGATTTGACAGG.............................................................................................................1911.001.00-------------1.00-------------------------
.................................................................................................................................AGCATGTGGTGAAAGAGGAGCTGCTCA......................2711.001.00-------------------------------1.00-------
........................................................AGGATTTGACAGGCAGGCTCGG....................................................................................................2211.001.00-----------------------1.00---------------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGGGA................................................................................................3211.001.00----------------------------------1.00----
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGG...................................................................................................2911.001.00----------------1.00----------------------
..............................................................................................................................AGGAGCATGTGGTGAAAGAGGA..............................2211.001.00--1.00------------------------------------
..............................................................................................................................AGGAGCATGTGGTGAAAGAGGAGC............................2411.001.00--1.00------------------------------------
....................................................................................................CTTACTCCTGCCTGCTGAATGTCA......................................................241.000.00----------------------------1.00----------
..................................................GTGAGTAGGATTTGACAGGCAGGCTCGGGT..................................................................................................3011.001.00--------------------1.00------------------
.....................................................AGTAGGATTTGACAGGC............................................................................................................1711.001.00---------------------------------1.00-----
.....................................................................................................TTACTCCTGCCTGCTGAATGTC.......................................................2211.001.00---------------------1.00-----------------
...........................................CTTGCAGGTGAGTAGGAT.....................................................................................................................1811.001.00-------------------1.00-------------------
.....................................................................CAGGCTCGGGTGAAG..............................................................................................1511.001.00-----------------------------1.00---------
..............................................................................................................................................AGAGGAGCTGCTCAACGCCTTGTACT..........2611.001.00------------------------1.00--------------
.............................................................................................................GCCTGCTGAATGTCCATC...................................................181.000.00------------------------------1.00--------
...............................CAAGTTTCACCCCTTGCAG................................................................................................................................1911.001.00------------1.00--------------------------
.............................................................................................................................CAGGAGCATGTGGTGCAAG..................................191.000.00----------1.00----------------------------
..................................................GTGAGTAGGATTTGACAGGCAG..........................................................................................................2211.001.00--------------1.00------------------------
.............................................................TTGACAGGCAGGCTCGGGTG.................................................................................................2011.001.00-----------------1.00---------------------
.............................................................................................................................CAGGAGCATGTGGTGAAAGAGGAGCTG..........................2711.001.00--------------------------------1.00------
.................................................................CAGGCAGGCTCGGGTGAAGGGAAAGGC......................................................................................2711.001.00---------------1.00-----------------------
..............................................................................................................................AGGAGCATGTGGTGAAAGAGGAGCTGC.........................2711.001.00---1.00-----------------------------------
................AGACATCCTGTGTCTCAAGTTTCAC.........................................................................................................................................2511.001.00--1.00------------------------------------
.............................................................................................................................CAGGAGCATGTGGTGA.....................................1620.500.50---0.50-----------------------------------
............................................................TTTGACAGGCAGGCTC......................................................................................................1630.330.33-------------------------------------0.33-
...............................................CAGGTGAGTAGGATT....................................................................................................................1550.200.20--------------------------------------0.20

Antisense strand
TGTGCAGTTCCGATGAAGACATCCTGTGTCTCAAGTTTCACCCCTTGCAGGTGAGTAGGATTTGACAGGCAGGCTCGGGTGAAGGGAAAGGCAGAGTAACCTTACTCCTGCCTGCTGAATGTCCACAGGAGCATGTGGTGAAAGAGGAGCTGCTCAACGCCTTGTACTGTGAATTTAT
......................................................((.((((......(((((((..(((((.(((..............))))))))..)))))))....))))))....................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029124(GSM416753)
HeLa. (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925PAZD5SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................ATGTGGTGAAAGAGGCAAG........................... 191.000.00-----------1.00---------------------------
....................................................................................................CTTACTCCTGCCTGCCGA............................................................ 181.000.00-------------------------1.00-------------