ID: uc002hbn.8
GENE: PIGS(2)
chr17:26890876-26891125-


(1)
AGO1.ip 		(1)
AGO2.ip 		(4)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(16)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN

Sense strand
GCTGCGGCAGATGGGCGAAATGGGTGTCATGTGTTTGATATCATCTATGCAGAAATCATTAGAGTTGGCTGCAGCTGCTTGGTCTTTTTCTGTAAACAGCCATCTTGCTGTCCTCAGATGCTGGACAGTGTTAGGTCTGGGAAGGTGGGCAGAGGCATGATGCTTGCCCTTTTCATTGTGCTACTTCTTATCCCTCCCAGACAAAATGAAAATCAAATGCCGTTTCCAGAAGGCCTATCGGAGGGCTTTG
........................................................................................................................................((((((.((((((.((.((((..(((...........)))..)))).)).)))).)).))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR343335SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................CTACTTCTTATCCCTCCCAG..................................................2016.006.005.00---------1.00-----------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCA.............................................................................................2215.005.00--------------1.00--------1.00-1.001.00------1.00------------
....................................................................................................................................................................................CTACTTCTTATCCCTCCCAGA.................................................2115.005.00-5.00--------------------------------------------
.................................................................................................................................................................................GTGCTACTTCTTATCCCTCCCAGA.................................................2414.004.00--4.00-------------------------------------------
..................................................................................................................................................................................TGCTACTTCTTATCCCTCCCAG..................................................2213.003.003.00---------------------------------------------
...................................................................................................................................................................................GCTACTTCTTATCCCTCCCAG..................................................2113.003.001.00------2.00--------------------------------------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCATGAT.........................................................................................2412.002.00-----------1.00----------------------1.00-----------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCATGA..........................................................................................2312.002.00--------2.00-------------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGG...............................................................................................2012.002.00----2.00-----------------------------------------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCA.............................................................................................2012.002.00------------1.00-------1.00-------------------------
............................................................................................................................ACAGTGTTAGGTCTGGGAAGGTGGG.....................................................................................................2512.002.00------2.00---------------------------------------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCAT............................................................................................2112.002.00---------------1.00---------------1.00--------------
........................................................................................................................................................AGGCATGATGCTTGCAGCG...............................................................................191.000.00---1.00------------------------------------------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCATAA..........................................................................................2311.002.00---------1.00------------------------------------
..................................................................................................................................TTAGGTCTGGGAAGGTGGGCAGAGGCAC............................................................................................281.000.00-----1.00----------------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCAA............................................................................................2311.005.00--------------------------------1.00-------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCAAGA..........................................................................................2511.005.00----------------------1.00-----------------------
.........................................................................................................................................................................................TCTTATCCCTCCCAGACAAAATGAAA.......................................2611.001.00---------------------------1.00------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCAT............................................................................................2311.001.00---1.00------------------------------------------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGC..............................................................................................1911.001.00----------------------------1.00-----------------
............................................................................................................................................................................................................................CGTTTCCAGAAGGCCTATCGGAA.......231.000.00-----------------------------------------1.00----
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCATGT..........................................................................................251.000.00--------------------------------------1.00-------
.........................................................................................................................................TGGGAAGGTGGGCAGAGGCATGAA.........................................................................................2411.002.00------------------1.00---------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGC..............................................................................................2111.001.00-------------1.00--------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGAAGG...........................................................................................2411.002.00-------------------1.00--------------------------
........................................................................................................................................CTGGGAAGGTGGGCAGAGGCATGATGCT......................................................................................2811.001.00----------------1.00-----------------------------
....................................................................................................................................................................................CTACTTCTTATCCCTCCCAGT.................................................2111.006.001.00---------------------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCAAC...........................................................................................2411.005.00---1.00------------------------------------------
.....................................................................................................................................................................................TACTTCTTATCCCTCCCAG..................................................1911.001.001.00---------------------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCAAT...........................................................................................2411.005.00-----------------------------------1.00----------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCATTAT.........................................................................................2611.001.00-----------------1.00----------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAAGA..............................................................................................211.000.00----------------------------------------1.00-----
....................................................................................................................................................................................CTACTTCTTATCCCTCTCAG..................................................201.000.001.00---------------------------------------------
..................................................................................................................................................................................TGCTACTTCTTATCCCTCCCA...................................................2111.001.001.00---------------------------------------------
....................................................................................................................................................................................CTACTTCTTATCCCTCCCAGAT................................................2211.005.001.00---------------------------------------------
........................................................................................................................CTGGACAGTGTTAGGTCTG...............................................................................................................1911.001.00---------------------1.00------------------------
................................................................................................................................................................................................................AAAATCAAATGCCGTTTCCAG.....................2111.001.001.00---------------------------------------------
.......................................................................................................................................TCTGGGAAGGTGGGCAGAGGCATGTT.........................................................................................261.000.00-------------------------------------1.00--------
.............................................................................................................................................................................CATTGTGCTACTTCTTATCCCTCCCAG..................................................2711.001.00------------------------1.00---------------------
.......................................................................................................................GCTGGACAGTGTTAGATG.................................................................................................................181.000.00------------------------------------1.00---------
.................................................................................................................................................................................GTGCTACTTCTTATCCCTCCCAGT.................................................241.000.00-----------------------------1.00----------------
...........................................................TAGAGTTGGCTGCAGCTGCTTGTCTT.....................................................................................................................................................................261.000.00-----1.00----------------------------------------
..................................................................................................................................................................................TGCTACTTCTTATCCCTCCCATT.................................................2311.001.001.00---------------------------------------------
..............................................................AGTTGGCTGCAGCTGCT...........................................................................................................................................................................1720.500.50-------------------------------------------0.50--
.....................................................AATCATTAGAGTTGG......................................................................................................................................................................................1540.250.25---------------------------------------------0.25

Antisense strand
GCTGCGGCAGATGGGCGAAATGGGTGTCATGTGTTTGATATCATCTATGCAGAAATCATTAGAGTTGGCTGCAGCTGCTTGGTCTTTTTCTGTAAACAGCCATCTTGCTGTCCTCAGATGCTGGACAGTGTTAGGTCTGGGAAGGTGGGCAGAGGCATGATGCTTGCCCTTTTCATTGTGCTACTTCTTATCCCTCCCAGACAAAATGAAAATCAAATGCCGTTTCCAGAAGGCCTATCGGAGGGCTTTG
........................................................................................................................................((((((.((((((.((.((((..(((...........)))..)))).)).)))).)).))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR343335SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................................AGACAAAATGAAAATCAAATTAC............................. 231.000.00------------------------------------------1.00---
.............................................................................................................................................................TGATGCTTGCCCTTTTAGC.......................................................................... 191.000.00------------------------------1.00---------------
.............................................................................................................................................................TGATGCTTGCCCTTTAGC........................................................................... 181.000.00---------------------------------------1.00------
.....................................TCTGCATAGATGATAT..................................................................................................................................................................................................... 1640.250.25--------------------------------------------0.25-