ID: uc002hau.1_intron_2_0_chr17_26657255_r
GENE: IFT20(3)
chr17:26657205-26657518-


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(19)
CELL-LINE 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
TTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATGAAGGTAAGATCAGCATGTCTTCCGCCTACATCTTGGCCTGGGACCCTAGTTCACTACCCTCTCATCCCTCTTCCCTCTTGATTTATTTAGAGGGGTAGAGGGCTGGGTGGGTGAATTTTTATTTAAGATTTTAATAACTTCTGGTCCACTTAACCTACTGAACTTTTGCCAATCTTTATTTCCTTTAATCTTTATTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTGTGTCACCCAGGCTGGAGTGCACTGGTGCAATCTCGGCTCA
.....................................................................................................................................(((((((((((((((....(((((((.............(((...........)))..........)))))))...))))))))...........)))))))...............................................................................
.................................................................................................................................130...................................................................................................................................264................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785SRR390723(GSM850202)
total small RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM956925PAZD5SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTTAG.....................................................25102.000.0054.0044.001.00--2.001.00-----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAG.......................................................2376.000.0047.0026.00---2.001.00-----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAT......................................................2414.000.007.007.00----------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTATG......................................................229.000.003.006.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAAG.....................................................258.000.005.001.00---1.001.00-----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAAG......................................................247.000.003.003.00---1.00------------------------------
......................................................................................................................................................................................................................................................................................ACCCAGGCTGGAGTGCACGGCG..............225.000.00--2.003.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTTGG.....................................................255.000.003.002.00----------------------------------
......................................................................................................................................TAGAGGGGTAGAGGGCTGGGTTT.............................................................................................................................................................234.000.00---------4.00--------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTAAG.......................................................234.000.002.002.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAAA......................................................244.000.002.00--2.00--------------------------------
..................................................................................................................................................................................................................................................................................TGTCACCCAGGCTGGAGTGCACGGCG..............2603.001.00--2.001.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTAAAG......................................................243.000.001.002.00----------------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACGGCG..............243.000.00--2.001.00--------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTAG......................................................253.000.002.00-----1.00-----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAAA.....................................................252.000.002.00-----------------------------------
................................................................................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGGCG................262.000.00--1.001.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTCAG..........................................................202.000.00-----1.00-------1.00----------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTCCTT......................................................222.000.00---1.00-1.00------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTAG.........................................................222.000.001.00------1.00----------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTCTT.....................................................262.000.00-1.00----1.00-----------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTAAG......................................................232.000.001.001.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAA......................................................242.000.001.001.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTATT.....................................................252.000.001.001.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTAAG..........................................................212.000.00-1.00---1.00------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTATAG.....................................................252.000.001.001.00----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTGTT......................................................232.000.00---1.00--1.00-----------------------------
................................GAAAATGAAAAGATGAAG........................................................................................................................................................................................................................................................................1831.671.67---------------1.67--------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAGAG.....................................................251.000.001.00-----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTGTTTG....................................................261.000.00-------1.00----------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTAAG..........................................................221.000.00-----1.00------------------------------
..........................................................................................................................................................................................................................................................................................AGGCTGGAGTGCACTGGTGCAA..........2201.001.00--------------------1.00---------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTGATTT....................................................241.000.00---1.00--------------------------------
................................................................................................................................................................................................................................................................................TGTGTCACCCAGGCTGGAGTGCGAC.................251.000.00---1.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTATAG......................................................241.000.001.00-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTGGTC.......................................................241.000.00--1.00---------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTTTA.....................................................261.000.00-------1.00----------------------------
..................................................................................................................................................................................................................................................................................TGTCACCCAGGCTGGAGTGCACCAC...............2501.001.00---1.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCTAG.......................................................231.000.00-1.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTAAT.....................................................261.000.001.00-----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAAAG.....................................................251.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTATAT...........................................................211.000.00-------1.00----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTCAAG......................................................241.000.00-----1.00------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCTC........................................................221.000.00-----1.00------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTATA.........................................................211.000.001.00-----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCAT......................................................231.000.001.00-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTACTG.......................................................241.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTCTTC......................................................231.000.00-----1.00------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTATAT.....................................................241.000.00-1.00----------------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACCGCG..............241.000.00---1.00--------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCAAG.....................................................241.000.00-1.00----------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTATA......................................................221.000.001.00-----------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTCATC......................................................221.000.00-------1.00----------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTATCG.......................................................241.000.00-1.00----------------------------------
................................GAAAATGAAAAGATGAAGGC......................................................................................................................................................................................................................................................................201.000.00----------------1.00-------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTATA.....................................................251.000.001.00-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTTCA.....................................................261.000.00--1.00---------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTCTG.....................................................261.000.00-1.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTTCC.....................................................251.000.00-----1.00------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTCTA.....................................................251.000.00------1.00-----------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCTAG.....................................................241.000.00-1.00----------------------------------
..........................................................................................................................................................................................TCTGGTCCACTTAACCTACTGAACTCTG....................................................................................................281.000.00-----------------------------1.00------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTATTG......................................................241.000.001.00-----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTCCG.......................................................221.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTCCAG......................................................231.000.001.00-----------------------------------
.................................................................................................................................................................................................................................................................................................AGTGCACTGGTGCAAGGG.......181.000.00--------1.00---------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTATCT.....................................................241.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTAGTC.....................................................241.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTGAGTTAG..................................................271.000.00-----1.00------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTCAT.........................................................211.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................TCTTGCTGTGTCACCCAGGCGGAG........................241.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTATG......................................................241.000.00-----1.00------------------------------
.............................................................................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGCC...................261.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCCG......................................................231.000.00------1.00-----------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTGAGACC...................................................251.000.00---1.00--------------------------------
.....................................................................................................................................................CTGGGTGGGTGAATTCTG...................................................................................................................................................181.000.00------------------------1.00-----------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTGAGGTA...................................................261.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTATAG.....................................................241.000.00-1.00----------------------------------
..GAGCTTGTTGATCAATGTA.....................................................................................................................................................................................................................................................................................................191.000.00--------1.00---------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTATG.......................................................231.000.001.00-----------------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACGCAG..............241.000.00---1.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTTAA.....................................................251.000.001.00-----------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTGACC.....................................................231.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTCAAG........................................................221.000.00-1.00----------------------------------
..................................................................................................................................................................................................................................................................................TGTCACCCAGGCTGGAGTGCAC..................2201.001.00-----------------------1.00------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTCTCT......................................................251.000.00-------1.00----------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACTATCG.............251.000.00-------------1.00----------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTAAG......................................................251.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCATG.....................................................241.000.00-------1.00----------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTCTT...........................................................211.000.00-------1.00----------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCCCC.....................................................241.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCAAG.......................................................231.000.001.00-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTCATT.......................................................241.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTATG.....................................................251.000.001.00-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTAATG.........................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTGGCC.....................................................271.000.00--1.00---------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTCTAT......................................................221.000.00------1.00-----------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTGG......................................................241.000.001.00-----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCCAT.......................................................231.000.00-1.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTTAG.....................................................261.000.00-1.00----------------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACTGGTCC............261.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTAGCT.....................................................241.000.00----------------------------1.00-------
...............................................................................................................................................................................................................................................TATTTTTTTTTTTTTTTTGACGGG...................................................241.000.00--1.00---------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTAAG.......................................................241.000.001.00-----------------------------------
......................................................................................................................................TAGAGGGGTAGAGGGCTG..................................................................................................................................................................1811.001.00------------1.00-----------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTATTG.....................................................261.000.00------1.00-----------------------------
.............................................................................................................................................................................................................................................................TTTTGAGACAGAGTCTTGCTGGAGC....................................251.000.00---1.00--------------------------------
................................................................................................................................................GAGGGCTGGGTGGGTATTT.......................................................................................................................................................191.000.00-------------------1.00----------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCTTG.......................................................231.000.00-------1.00----------------------------
................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTTTGAGACAGAGACCC............................................301.000.00--1.00---------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTATG......................................................231.000.00-1.00----------------------------------
................................................................................................................................................................................................................................................................TGAGACAGAGTCTTGCTGTGGGCC..................................241.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAAT.....................................................251.000.00------1.00-----------------------------
......................................................................................................................................................................................................................................TTTAATCTTTATTTTTTTTTTTAT............................................................241.000.00-------1.00----------------------------
..................................................................................................................................................................................................................................TTCCTTTAATCTTTATTTTTTTTTTTG.............................................................271.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGG....................251.000.00--1.00---------------------------------
.....................CAAAAGAAGCAGAAAATGAAAAGATGA..........................................................................................................................................................................................................................................................................2711.001.00---------------------------1.00--------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTCCAG......................................................241.000.00-1.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTTAGG.....................................................251.000.001.00-----------------------------------
...............................................................................................................................ATTTATTTAGAGGGGGAAG........................................................................................................................................................................191.000.00-------------------------------1.00----
........................................................................................................................................................................................................................................................................AGTCTTGCTGTGTCACCCAG..............................2001.001.00-------------------------1.00----------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTCTA..........................................................211.000.00-------1.00----------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTATTG.........................................................221.000.00-1.00----------------------------------
.........................................................................................................................................................................................................................................AATCTTTATTTTTTTTTTTTCT...........................................................221.000.00------1.00-----------------------------
.........................................................................................................................................................................................................................................AATCTTTATTTTTTTTTTTTTTTTAG.......................................................261.000.00------1.00-----------------------------
.............................................................................................................................................................................................................................................................................TGCTGTGTCACCCAGGCTGGAGCGAC...................261.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTCG........................................................221.000.001.00-----------------------------------
..........................................................................................................................................................................................................................................................................................AGGCTGGAGTGCACTGCGCG............201.000.00--1.00---------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTTAGC.....................................................261.000.00--1.00---------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTCTT........................................................221.000.00-----1.00------------------------------
..GAGCTTGTTGATCAATGC......................................................................................................................................................................................................................................................................................................181.000.00--------1.00---------------------------
....................................................................................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCACGC................221.000.00---1.00--------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTCAAG......................................................251.000.00-------1.00----------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTAG.........................................................231.000.001.00-----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTCATT.....................................................251.000.00-1.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTAG.......................................................241.000.00-1.00----------------------------------
.........................................................................................................................................AGGGGTAGAGGGCTGTAT...............................................................................................................................................................181.000.00-----------------1.00------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCAG......................................................231.000.00-1.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTATTG......................................................251.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTACTA.....................................................241.000.001.00-----------------------------------
..............................................................................................................................................................................................................................................TTATTTTTTTTTTTTTTTTCTGT.....................................................231.000.00---1.00--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTATAA.....................................................251.000.00-1.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTAAAA.....................................................251.000.00-1.00----------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTGGCT.....................................................251.000.00---1.00--------------------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCTTG.....................................................241.000.00-1.00----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTG........................................................2380.380.380.120.12----0.12-----------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTT.........................................................2360.330.330.170.17----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTTTTG.....................................................2760.330.33-0.17---0.17------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTG.........................................................2370.290.14-0.14----0.14-----------------------------
...............................................................................................................................................................................................TCCACTTAACCTACT............................................................................................................1550.200.20-----------------------------------0.20
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTAAG......................................................2660.170.33-0.17----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTCT.......................................................2560.170.33---0.17--------------------------------
............................................................................................................................................................................................................................................CTTTATTTTTTTTTTTTTTTTGAGACAGAGT...............................................3160.170.17--0.17---------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTA........................................................2460.170.330.17-----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTTAT......................................................2660.170.33-0.17----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTATT......................................................2660.170.330.17-----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTT..........................................................2270.140.140.14-----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTC.........................................................2370.140.14-0.14----------------------------------
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTCT........................................................2470.140.140.14-----------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTGCCCC....................................................2780.120.38--0.12---------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTTTGCC......................................................2580.120.38--0.12---------------------------------

Antisense strand
TTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATGAAGGTAAGATCAGCATGTCTTCCGCCTACATCTTGGCCTGGGACCCTAGTTCACTACCCTCTCATCCCTCTTCCCTCTTGATTTATTTAGAGGGGTAGAGGGCTGGGTGGGTGAATTTTTATTTAAGATTTTAATAACTTCTGGTCCACTTAACCTACTGAACTTTTGCCAATCTTTATTTCCTTTAATCTTTATTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTGTGTCACCCAGGCTGGAGTGCACTGGTGCAATCTCGGCTCA
.....................................................................................................................................(((((((((((((((....(((((((.............(((...........)))..........)))))))...))))))))...........)))))))...............................................................................
.................................................................................................................................130...................................................................................................................................264................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189785SRR390723(GSM850202)
total small RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM956925PAZD5SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCCC...................................................... 2318.000.00----18.00-------------------------------
..................................................................GCCAAGATGTAGGCGGAA...................................................................................................................................................................................................................................... 1812.002.00-----------2.00------------------------
...............................................................CCCAGGCCAAGATGTAGGCGGAAGAC................................................................................................................................................................................................................................. 2612.002.00----------2.00-------------------------
...........................................................................................................................................................................................................................................................................................GGCTGGAGTGCACTGGTGCAGGGC....... 241.000.00--1.00---------------------------------
............................................................................................GATGAGAGGGTAGTGAACTAG......................................................................................................................................................................................................... 2111.001.00------------1.00-----------------------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTTTCTTT..................................................... 241.000.00--------1.00---------------------------
.......................................................................................................................................................................................................ATAAAGATTGGCAAAAGTTCAGTAGGT........................................................................................ 2711.001.00----------1.00-------------------------
...........................................................................................................CTCATCCCTCTTCCCTCGAA........................................................................................................................................................................................... 201.000.00------------------------------1.00-----
............................................................................................................................................................................................................................................................ACACAGCAAGACTCTGTCTCAAAAA..................................... 2501.001.00--------------1.00---------------------
.................................AAAATGAAAAGATGAAATT...................................................................................................................................................................................................................................................................... 191.000.00---1.00--------------------------------
...........................................................................................................................................................................................................................................TCTTTATTTTTTTTTTTTTTCTTG....................................................... 241.000.00------------1.00-----------------------
..............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAATAA......................................................... 1901.001.00--------------1.00---------------------
..........................GAAGCAGAAAATGAAAGTTT............................................................................................................................................................................................................................................................................ 201.000.00--1.00---------------------------------
...............................................................CAAGATGTAGGCGGAAGAC........................................................................................................................................................................................................................................ 1911.001.00-----------1.00------------------------
...................................................................................................................................................................................AGTGGACCAGAAGTTATT..................................................................................................................... 1811.001.00--------------------------------1.00---
..........................................................................................................................................................................................................................................ATCTTTATTTTTTTTTTTTTTTTAAA...................................................... 2661.000.00--------------------------1.00---------
.............................................................................................................................................................................................................................................TTTATTTTTTTTTTTTTTCTTA....................................................... 221.000.00------------------1.00-----------------
...........................................................................................................................................................................................................................................................................................GGCTGGAGTGCACTGGTGCAATCAGC..... 261.000.00--1.00---------------------------------
....................................................................................................CTACCCTCTCATCCCAAGG................................................................................................................................................................................................... 191.000.00----------------------1.00-------------
............................................................AAGATGTAGGCGGAAGACATG......................................................................................................................................................................................................................................... 2111.001.00---------------------------------1.00--
.............................................................................................................................................................................................................................................AAAAAAAAAAAAAAATAAA.......................................................... 1901.001.00---------------------1.00--------------
........................TTTTCATTTTCTGCTTCTT............................................................................................................................................................................................................................................................................... 1920.500.50----------------0.50-------------------
.........................................................................................................AGGGAAGAGGGATGAGAG............................................................................................................................................................................................... 1840.250.25----------------------------------0.25-