ID: uc002gsp.9
GENE: LLGL1(10)
chr17:18138577-18138833+


(1)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTGTGAGCGCTGGCGAGCAGCAGAGCCCCCAGCCTGTCTCCAGTGCCTTGGTGTGTGCGGCGATCAGGGGGGTCTTACAGGGTGGAGTCTTGAGGAGGGGGAGAGTTTCAGTTCTAAGCCCGGAGGTCAGAATGTGCCATACTCGGGGTGAGAGGGAGAAGATGTTCGTCCTAACCTTGTGCATACATCTCTGCCACCCCCTCCCAGAGCTGGCCCATCACTGGGGGCCGAAACCTGGCCCAGGAGCCGTCACAGCG
................................................................................................................................................((((((..(((((....((((.((.........)).))))...)))))..)))))).........................................................
.........................................................................................................................................138..................................................................207................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189787SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATGT............................................................................................23139.0039.0016.006.00--2.002.00-2.001.00-1.00---1.001.00--1.00--1.00----------1.00-1.00----------1.001.00---1.00-
......................................................................................................................................................................................ATACATCTCTGCCACCCCCTCC.....................................................2215.005.00----------------1.00------1.00--1.00-1.00-1.00---------------------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATG.............................................................................................2214.004.00-----------1.00------------1.00-------------------1.00----1.00--
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGAT..............................................................................................2113.003.003.00---------------------------------------------------
.............................................................................................................................................CTCGGGGTGAGAGGGAGAAGATGT............................................................................................2413.003.00--3.00-------------------------------------------------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATGA............................................................................................2312.004.00----1.00------------------------------------------1.00----
..............................................................................................................................................TCGGGGTGAGAGGGAGAAG................................................................................................1912.002.00------------------------------------1.00----1.00----------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGACGT............................................................................................232.000.00------1.00--1.00------------------------------------------
..........................................................................................TGAGGAGGGGGAGAGTTTAGGT.................................................................................................................................................221.000.00----------1.00-----------------------------------------
...........................................................................................................................................TACTCGGGGTGAGAGGGAGAAG................................................................................................2211.001.00--1.00-------------------------------------------------
......................................................................................................................................................................................ATACATCTCTGCCACCCCCTT......................................................2111.001.00-----------------1.00----------------------------------
............................................................................................................................................ACTCGGGGTGAGAGGGAGAAGAT..............................................................................................2311.001.00---------------------------------------1.00------------
......................................................................................................................................................................................ATACATCTCTGCCACCCCCT.......................................................2011.001.00------------------------------------------------1.00---
......................................................................................................................................................................................ATACATCTCTGCCACCCCCTTAA....................................................2311.001.00--------------------1.00-------------------------------
.......................................................................................................................................................................................TACATCTCTGCCACCCCCTCAAA...................................................231.000.001.00---------------------------------------------------
......................................................................................................................................................................................ATACATCTCTGCCACCCCCTCCCAG..................................................2511.001.00-------------------------------------------1.00--------
.TGTGAGCGCTGGCGAGCAGCA...........................................................................................................................................................................................................................................2111.001.00-----------------------------1.00----------------------
................................................................................................................................................GGGGTGAGAGGGAGAAGATGT............................................................................................2111.001.00--------1.00-------------------------------------------
...........................................................................................................................................TACTCGGGGTGAGAGGGAGAAGATGT............................................................................................2611.001.00----------------------------------------1.00-----------
..........................................................................................................................................................................................ATCTCTGCCACCCCCTCCCAG..................................................2111.001.00---------------------------1.00------------------------
..........................................................................................................................................................................................ATCTCTGCCACCCCCTCCC....................................................1911.001.00----------------------1.00-----------------------------
.............................................................................................................................................CTCGGGGTGAGAGGGAGAAGACGT............................................................................................241.000.00------1.00---------------------------------------------
...............................................................................................................................................CGGGGTGAGAGGGAGAAGATGT............................................................................................2211.001.001.00---------------------------------------------------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATGTAA..........................................................................................2511.0039.00-------------------------------1.00--------------------
..............................................................................................................GTTCTAAGCCCGGAGGATC................................................................................................................................191.000.00---1.00------------------------------------------------
..GTGAGCGCTGGCGAGCT..............................................................................................................................................................................................................................................171.000.00--------------------------------------1.00-------------
......................................................................................................................................................................................................................................AAACCTGGCCCAGGAGC..........1711.001.00-----------------------------------1.00----------------
.........................................................CGGCGATCAGGGGGGTCTT.....................................................................................................................................................................................1911.001.00---1.00------------------------------------------------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATGTA...........................................................................................2411.0039.00------------------------------------------1.00---------
..............................................................................................................................................TCGGGGTGAGAGGGAGAAGATGC............................................................................................2311.004.00---------1.00------------------------------------------
......................................................................................................................................................................................ATACATCTCTGCCACCCCCTC......................................................2111.001.00-------------------------1.00--------------------------
.........................................................CGGCGATCAGGGGGGTTT......................................................................................................................................................................................181.000.00---1.00------------------------------------------------
..........................................................................................................................................................................................ATCTCTGCCACCCCCT.......................................................1650.200.20---------------------------------------------------0.20

Antisense strand
TTGTGAGCGCTGGCGAGCAGCAGAGCCCCCAGCCTGTCTCCAGTGCCTTGGTGTGTGCGGCGATCAGGGGGGTCTTACAGGGTGGAGTCTTGAGGAGGGGGAGAGTTTCAGTTCTAAGCCCGGAGGTCAGAATGTGCCATACTCGGGGTGAGAGGGAGAAGATGTTCGTCCTAACCTTGTGCATACATCTCTGCCACCCCCTCCCAGAGCTGGCCCATCACTGGGGGCCGAAACCTGGCCCAGGAGCCGTCACAGCG
................................................................................................................................................((((((..(((((....((((.((.........)).))))...)))))..)))))).........................................................
.........................................................................................................................................138..................................................................207................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189787SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................GGGTGGAGTCTTGAGAG................................................................................................................................................................. 172.000.00------------1.00------------------------1.00--------------
........................GCCCCCAGCCTGTCTCCACAG.................................................................................................................................................................................................................... 211.000.00---------------------------------1.00------------------
..............................................................................................................................................................................................................................GGGGGCCGAAACCTGGCCTCG.............. 211.000.00-------------1.00--------------------------------------