ID: uc002gse.1_intron_5_0_chr17_17931692_r
GENE: ATPAF2(2)
chr17:17931642-17931978-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
HEART 		(1)
LIVER 		(4)
OTHER 		(5)
SKIN 		(1)
TESTES

Sense strand
TACAGAAAGGAAGAGGTTTTATCAGAATGTCAGCATCACACAGGGTGAAGGTGAGTGTCTGAAATTTTGACTGCCTCTTTTTTTTTTTTTTTTTGTGAATGGTTGGGAACATTTTTCATCTTCAGCTGGTTTCATGGTGCGATTATCCTTCCTGCTTTTTGTGAGATATATTTCTGTAAGGGACTCAGAGTTGGCTTTGTCTGCACCAATTCAAGTGGCTAAATATAGGAATGGTCACTTGATTCCACTTAACAAATCCCTGAGAGTTTTTCATTTGATCTTTCAAGGTGGCTTTGAGATAAACCTGGACCACAGGAAGCTGAAAACTCCCCAAGCC
....................................................(((.(((.........)))...))).................(((((....((....))...)))))..........................................................................................................................................................................................................................
..................................................51..........................................................................127................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.....................TCAGAATGTCAGCATCTCA.........................................................................................................................................................................................................................................................................................................192.000.00------1.00--------1.00------------
......................................................................................................TTGGGAACATTTTTCATGTAT......................................................................................................................................................................................................................212.000.00-----1.00-1.00--------------------
...............................................................ATTTTGACTGCCTCTTTTTTTTTAAC........................................................................................................................................................................................................................................................262.000.001.001.00--------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTTAC.................................................................................................................................................................................................................................................272.000.002.00---------------------------
............................................................................CTTTTTTTTTTTTTTTTTGTGGGCT............................................................................................................................................................................................................................................252.000.001.001.00--------------------------
...............................................................ATTTTGACTGCCTCTTTTTTTTTTTTTGTGA...................................................................................................................................................................................................................................................312.000.00-2.00--------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTCTAG...............................................................................................................................................................................................................................................252.000.00----1.00----1.00------------------
..........................................................................CTCTTTTTTTTTTTTTTTTTGCCG...............................................................................................................................................................................................................................................241.000.00---------------------1.00------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTGGAG.................................................................................................................................................................................................................................................271.000.001.00---------------------------
..............................................................AATTTTGACTGCCTCTT..................................................................................................................................................................................................................................................................1711.001.00-----------------------1.00----
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTTAAA................................................................................................................................................................................................................................................281.000.001.00---------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTCCAT...............................................................................................................................................................................................................................................251.000.00----1.00-----------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTTCCAG.................................................................................................................................................................................................................................................251.000.001.00---------------------------
......................................................................................................................................................................................................................................................................................................TGAGATAAACCTGGACCACAGGAAGC.................2611.001.00--------1.00-------------------
...........................................................................TCTTTTTTTTTTTTTTTTTGTGGGGC............................................................................................................................................................................................................................................261.000.001.00---------------------------
...........................................................................TCTTTTTTTTTTTTTTTTTGTGGGCT............................................................................................................................................................................................................................................261.000.00-1.00--------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTCGTG.................................................................................................................................................................................................................................................271.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTGAG........................................................................................................................................................................................................................................................201.000.00-1.00--------------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTCCAG..................................................................................................................................................................................................................................................241.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTACT.................................................................................................................................................................................................................................................271.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTTACT................................................................................................................................................................................................................................................281.000.001.00---------------------------
.................................................................................................................................................................................................................TTCAAGTGGCTAAATTTCG.............................................................................................................191.000.00-------1.00--------------------
.................................................................TTTGACTGCCTCTTTTTTTTTAACC.......................................................................................................................................................................................................................................................251.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTA....................................................................................................................................................................................................................................................241.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTTTAGA...............................................................................................................................................................................................................................................291.000.001.00---------------------------
......................................................................CTGCCTCTTTTTTTTTTTAAG......................................................................................................................................................................................................................................................211.000.00---------1.00------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTTTCCC.................................................................................................................................................................................................................................................251.000.001.00---------------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTGC....................................................................................................................................................................................................................................................221.000.001.00---------------------------
....................................................................................................................................................................................................................................................................................................TTTGAGATAAACCTGTATC..........................191.000.00------------------1.00---------
.......................................................................................................................................................................................CTCAGAGTTGGCTTTGTCTGC.....................................................................................................................................2111.001.00-----------------1.00----------
................................................................................................................................................................................................................................................................TCCCTGAGAGTTTTTATCT..............................................................191.000.00--1.00-------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTAAC......................................................................................................................................................................................................................................................221.000.001.00---------------------------
.....................TCAGAATGTCAGCATCACACAGGGTG..................................................................................................................................................................................................................................................................................................2611.001.00-------------------1.00--------
........................................................................GCCTCTTTTTTTTTTTTTTATT...................................................................................................................................................................................................................................................221.000.00---1.00------------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTCCC...................................................................................................................................................................................................................................................231.000.001.00---------------------------
..............................................................................................................ATTTTTCATCTTCAGGGTT................................................................................................................................................................................................................191.000.00--1.00-------------------------
.................................................................TTTGACTGCCTCTTTTTTTTTAAC........................................................................................................................................................................................................................................................241.000.00-1.00--------------------------
...........................................................................TCTTTTTTTTTTTTTTTTTGTGGCTC............................................................................................................................................................................................................................................261.000.00-1.00--------------------------
................................................................TTTTGACTGCCTCTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................2811.001.001.00---------------------------
.........................................................................................................................................................................................................................................................................................................................AGGAAGCTGAAAACTCCA......181.000.00------1.00---------------------
..........................................................................CTCTTTTTTTTTTTTTTTTTGTTTCC.............................................................................................................................................................................................................................................261.000.00---1.00------------------------
.................................................................................................................................................................................AAGGGACTCAGAGTTGGCTTTGTCTG......................................................................................................................................2611.001.00--------------------1.00-------
.......................................................................TGCCTCTTTTTTTTTTTTTTGGCC..................................................................................................................................................................................................................................................241.000.001.00---------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTCACA...............................................................................................................................................................................................................................................251.000.00--------------1.00-------------
..........................................................CTGAAATTTTGACTGCCTCTTTTT...............................................................................................................................................................................................................................................................2411.001.00----------------------1.00-----
.......................................................................TGCCTCTTTTTTTTTTTTTTTTCTGC................................................................................................................................................................................................................................................261.000.00-1.00--------------------------
...............................................................................TTTTTTTTTTTTTTTGTGAATGTTT.........................................................................................................................................................................................................................................251.000.00--1.00-------------------------
.............................................................................................................................................................................................................................................................................................................AACCTGGACCACAGGGGTA.................191.000.00----------1.00-----------------
.......................................................................TGCCTCTTTTTTTTTTTTTTTTTCTGC...............................................................................................................................................................................................................................................271.000.00-1.00--------------------------
.....................................................................ACTGCCTCTTTTTTTTTTCCT.......................................................................................................................................................................................................................................................211.000.00-1.00--------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTGGCAC..............................................................................................................................................................................................................................................261.000.001.00---------------------------
..................................................................................................................................................................................................................................................................................................GCTTTGAGATAAACCTGGACCA.........................2211.001.00------------1.00---------------
..............................................................................TTTTTTTTTTTTTTTTGTGAACGCT..........................................................................................................................................................................................................................................251.000.00---1.00------------------------
...................................................................TGACTGCCTCTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................281.000.001.00---------------------------
..........................................................................CTCTTTTTTTTTTTTTTTTTGTTGGC.............................................................................................................................................................................................................................................261.000.001.00---------------------------
...............................................................ATTTTGACTGCCTCTTTTTTTTTTTGTGA.....................................................................................................................................................................................................................................................291.000.00-1.00--------------------------
.................................................................................................................................................................................AAGGGACTCAGAGTTGGCTTTGTCTGCAACA.................................................................................................................................311.000.00-1.00--------------------------
.................................................................................................................................................................................................................................................................................................................TGGACCACAGGAAGCTGAAAACTCCCCAAGC.3111.001.00--------1.00-------------------
..................................................................TTGACTGCCTCTTTTTTTTTTTTCCG.....................................................................................................................................................................................................................................................261.000.00-1.00--------------------------
................................................................................................................................................................................................................................................................................................................CTGGACCACAGGAAGCTG...............1821.001.00------------------------0.500.50--
.......................................................................TGCCTCTTTTTTTTTTTTTTTTTAAG................................................................................................................................................................................................................................................261.000.001.00---------------------------
.......................................................................TGCCTCTTTTTTTTTTTTTATGG...................................................................................................................................................................................................................................................231.000.001.00---------------------------
......................................................................CTGCCTCTTTTTTTTTTTTTTTTTCCCC...............................................................................................................................................................................................................................................281.000.001.00---------------------------
.....................................................................ACTGCCTCTTTTTTTTTTTTTTTTTAGGG...............................................................................................................................................................................................................................................291.000.001.00---------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTCCGC...............................................................................................................................................................................................................................................251.000.001.00---------------------------
.......................................................................TGCCTCTTTTTTTTTTTTTTTTTAG.................................................................................................................................................................................................................................................251.000.00-1.00--------------------------
.......................................................................................................................................................................................................................................................................................................GAGATAAACCTGGACCACA.......................1920.500.50----------0.50-----------------
...........................................................................................................................................................................................................................................................................TTTTCATTTGATCTTTC.....................................................1750.200.20--------------------------0.20-
.........................................................................CCTCTTTTTTTTTTTTTTTTTGTG................................................................................................................................................................................................................................................2460.170.17---0.17------------------------
.........................................................................CCTCTTTTTTTTTTTTTTTTTGTGT...............................................................................................................................................................................................................................................2560.170.17----0.17-----------------------
..................................................................................................................................................................................................................................................................................................................GGACCACAGGAAGCTG...............1670.140.14---------------------------0.14

Antisense strand
TACAGAAAGGAAGAGGTTTTATCAGAATGTCAGCATCACACAGGGTGAAGGTGAGTGTCTGAAATTTTGACTGCCTCTTTTTTTTTTTTTTTTTGTGAATGGTTGGGAACATTTTTCATCTTCAGCTGGTTTCATGGTGCGATTATCCTTCCTGCTTTTTGTGAGATATATTTCTGTAAGGGACTCAGAGTTGGCTTTGTCTGCACCAATTCAAGTGGCTAAATATAGGAATGGTCACTTGATTCCACTTAACAAATCCCTGAGAGTTTTTCATTTGATCTTTCAAGGTGGCTTTGAGATAAACCTGGACCACAGGAAGCTGAAAACTCCCCAAGCC
....................................................(((.(((.........)))...))).................(((((....((....))...)))))..........................................................................................................................................................................................................................
..................................................51..........................................................................127................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................................................................................................................ATCCCTGAGAGTTTTTCCAG.............................................................. 202.000.00--1.00--------1.00----------------
....................................................................................................................................................................................................TTGTCTGCACCAATTTGG........................................................................................................................... 181.000.00-----1.00----------------------
...............................................................................................................................................................................................................................................................................................................CCTGGACCACAGGAAGGT................ 181.000.00-------------1.00--------------
............................................................................................................................................................................................................................................ACTTGATTCCACTTAACAT.................................................................................. 191.000.00--1.00-------------------------
.........................................................................................................................................................................................................TGCACCAATTCAAGTATA...................................................................................................................... 181.000.00----------------1.00-----------