ID: uc002grp.1_intron_8_0_chr17_17719688_r
GENE: (5)
chr17:17719638-17719820-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(7)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(4)
HELA 		(2)
LIVER 		(3)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCGAGACGCAGCCCTGGTCTACCATAAGCTGCACCAGCTGCACACCATGGGTAGGACTGAGCGTGGGGCGGGCTCCGAGGTGCTCCCTGCTGCCTGTGCTCCACCCACAGCCTCATGCCTGCTTGCCTTCCAGGGAAGCACACAGGCGGGCACCTCACTGCCACCAACCTGGCGCTGAGTGCC
..................................................(((((..((((((((((..((((....((((((.....)).))))..))))..))))).)).)))..))))).............................................................
..................................................51................................................................................133................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGGACTGAGCGTGGGGC..................................................................................................................19138.0038.0035.00-------1.00------------------------1.00-----------1.00-----------
.................................CCAGCTGCACACCATGG.....................................................................................................................................17110.0010.00--2.00--1.001.001.00---2.00-------------1.00-1.001.00----------------------------
..................................................GTAGGACTGAGCGTGGGG...................................................................................................................1819.009.006.00--1.00--------------1.00----------------------1.00---------------
..................................................GTAGGACTGAGCGTGGGGCG.................................................................................................................2019.009.005.00---------1.00--2.00--------1.00----------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCT.............................................................................................................2415.005.00-1.001.00---1.00-------------------------------1.00----1.00-------------
................................ACCAGCTGCACACCATGG.....................................................................................................................................1815.005.00-------------------2.00-1.00--------1.00-1.00------------------------
..................................................GTAGGACTGAGCGTGGG....................................................................................................................1715.005.00-5.00-------------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGG................................................................................................................2114.004.004.00--------------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTC............................................................................................................2514.004.00---2.00-------------------1.00------------------------1.00--------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCC...........................................................................................................2613.003.001.00--------------1.00--------------------1.00--------------------
...................................................TAGGACTGAGCGTGGGGC..................................................................................................................1813.003.003.00--------------------------------------------------------
....................................................AGGACTGAGCGTGGGGCGGGCT.............................................................................................................2213.003.00-----------------------------1.00--------------1.00----1.00-------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCCG..........................................................................................................2713.003.00---------------1.00------------------1.00-------1.00--------------
..................................................GTAGGACTGAGCGTGGGGCGT................................................................................................................2113.009.00-2.00------------------------1.00------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGG...............................................................................................................2213.003.002.00-------------1.00------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCCCCG..........................................................................................................2712.002.00----2.00----------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCCGA.........................................................................................................2812.002.00---------1.00--------------1.00--------------------------------
.................................CCAGCTGCACACCATGGG....................................................................................................................................1812.002.00-------2.00-------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGC..............................................................................................................2312.002.00--1.00---------1.00--------------------------------------------
..................................................GTAGGACTGAGCGTG......................................................................................................................1521.501.50-----0.50--1.00------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCC.............................................................................................................2411.002.00----1.00----------------------------------------------------
..............................................................................................................................................................TGCCACCAACCTGGCAAAG......191.000.00----1.00----------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGTAAA.............................................................................................................2411.009.00-1.00-------------------------------------------------------
..................................................GTAGGACTGAGCGTGGAAAG.................................................................................................................201.000.00-1.00-------------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGAA..............................................................................................................2311.004.00------1.00--------------------------------------------------
.................................................................................................................................................................CACCAACCTGGCGCTGAGTG..2011.001.00--------------1.00------------------------------------------
..................................CAGCTGCACACCATGG.....................................................................................................................................1641.001.00---------------------------------------------------0.75--0.25--
.......................................................................................TGCTGCCTGTGCTCCACCCACAGCCCTT....................................................................281.000.00----1.00----------------------------------------------------
.....................................................GGACTGAGCGTGGGGCGG................................................................................................................1811.001.00-----------------1.00---------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCCGAGGTGCTCCCTGCTGCCTGTGCTCCACCCACAGCCTCATGCCTGCTTGCCTTCC....................................................8111.001.00--------------------1.00------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCCGAGGTGCT...................................................................................................3411.001.00----------1.00----------------------------------------------
...................................................TAGGACTGAGCGTGGGGCGGGCT.............................................................................................................2311.001.001.00--------------------------------------------------------
................................................................GGGGCGGGCTCCGAGTCTC....................................................................................................191.000.00----------------1.00----------------------------------------
...................................................TAGGACTGAGCGTGGGG...................................................................................................................1711.001.00--1.00------------------------------------------------------
.........................................................TGAGCGTGGGGCGGGGGG............................................................................................................181.000.00--------------------------------------------------1.00------
...........................................................................................................................................ACACAGGCGGGCACCTCAC.........................1911.001.001.00--------------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCCCC...........................................................................................................2611.002.00----1.00----------------------------------------------------
....................................................AGGACTGAGCGTGGGGCGGG...............................................................................................................2011.001.00------------------1.00--------------------------------------
..................................................GTAGGACTGAGCGTGGGAT..................................................................................................................1911.005.00-----------------1.00---------------------------------------
...........................GCTGCACCAGCTGCACACCATGGGGAAG................................................................................................................................281.000.00-------------------------------1.00-------------------------
..................................CAGCTGCACACCATGGGTAGGAC..............................................................................................................................2311.001.00----------------------------------------1.00----------------
............................................CCATGGGTAGGACTGAGCGTGGGGC..................................................................................................................2511.001.00---------1.00-----------------------------------------------
...............................CACCAGCTGCACACCATGGGGA..................................................................................................................................221.000.00---------------------------------------1.00-----------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCCGAGGTGC....................................................................................................3311.001.00-------------------------------------1.00-------------------
..........................AGCTGCACCAGCTGCGGGC..........................................................................................................................................191.000.00-----1.00---------------------------------------------------
...............................................................................................................................................AGGCGGGCACCTCACTGCCACC..................2211.001.00-----------------------------------------------1.00---------
..................................................GTAGGACTGAGCGTGGGGCGAA...............................................................................................................2211.009.00--1.00------------------------------------------------------
..................................................GTAGGACTGAGCGTGGGGCGGGCTCA...........................................................................................................2611.004.00---1.00-----------------------------------------------------
..................................................GTAGGACTGAGCGTGGGT...................................................................................................................1811.005.00---1.00-----------------------------------------------------
......................................................................GGCTCCGAGGTGCTCTTC...............................................................................................181.000.00----------------1.00----------------------------------------
.................................................................................................................CATGCCTGCTTGCCTTCCAG..................................................2011.001.00-----------------------------------1.00---------------------
..................................................GTAGGACTGAGCGTGTGGC..................................................................................................................1920.501.50--------0.50------------------------------------------------
.............................................................................................CTGTGCTCCACCCACAG.........................................................................1720.500.50----------------------------------------------------0.50----
..................................................GTAGGACTGAGCGTGAAA...................................................................................................................1820.501.50-----------------------------------------------------0.50---
....................................................AGGACTGAGCGTGGGG...................................................................................................................1640.250.25---------0.25-----------------------------------------------
...................................AGCTGCACACCATGG.....................................................................................................................................1550.200.20-------------------------------------------------------0.20-
..................................................................................................CTCCACCCACAGCCTCA....................................................................1770.140.14--------------------------------------------------------0.14

Antisense strand
CCGAGACGCAGCCCTGGTCTACCATAAGCTGCACCAGCTGCACACCATGGGTAGGACTGAGCGTGGGGCGGGCTCCGAGGTGCTCCCTGCTGCCTGTGCTCCACCCACAGCCTCATGCCTGCTTGCCTTCCAGGGAAGCACACAGGCGGGCACCTCACTGCCACCAACCTGGCGCTGAGTGCC
..................................................(((((..((((((((((..((((....((((((.....)).))))..))))..))))).)).)))..))))).............................................................
..................................................51................................................................................133................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................TCCCTGGAAGGCAAGCAGGCATGAGGC............................................... 2711.001.00-----1.00---------------------------------------------------
.............................................................................................................CCTGGAAGGCAAGCAGGCATGAGGC................................................. 2511.001.00----------------------------------------------1.00----------
.........AGCCCTGGTCTACCACTTG........................................................................................................................................................... 191.000.00------------1.00--------------------------------------------
.......TTATGGTAGACCAGGGCTGC............................................................................................................................................................ 2011.001.00---1.00-----------------------------------------------------