| (1) BREAST | (10) CELL-LINE | (1) HEART | (1) HELA | (1) LIVER | (8) OTHER | (1) SKIN | (1) TESTES | (1) XRN.ip |
| TGCTGGCCGCTGTGGTCAGCATGGAGAGGCCAGACTTGGAGCAGCTGAAGGTGAGGACAGAAGGGAGAAAATGTTCTGCCACTAGAGCCTGCAGTGTACTCCACTCTGGGAGAGGTTGCAGAGGGGGGCTGTTTTTCCTGGATTGAGTTAGGTGGGTTCTGCTAGACTCTGGAAGACTGCTGACCCCATGTAGCAACCTGGGAATACCATACTGGGGAAAGAAGGATGGGTGAGCTGAAGAACAGAAGCA .......................................................................................................(((((.((....)).)))))((((...((((((((......(((((.(((((...))))).))))).))))))..))...))))............................................................... .......................................................................................................104.....................................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189783 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343336 | SRR189782 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189785 | SRR553576(SRX182782) source: Testis. (testes) | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR343334 | SRR029054(GSM402329) MCF7_smallRNAseq. (cell line) | TAX577746(Rovira) total RNA. (breast) | SRR189787 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343335 | SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................GGAGAGGTTGCAGAGTGG............................................................................................................................ | 18 | 55.00 | 0.00 | 37.00 | 3.00 | 3.00 | - | 3.00 | 4.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ............................................................................................................GGAGAGGTTGCAGAGTTG............................................................................................................................ | 18 | 6.00 | 0.00 | - | 1.00 | 1.00 | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ............................................................................................................................GGGGCTGTTTTTCCTGACC........................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ........................................................................................................................GAGGGGGGCTGTTTTGGTG............................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TGGAAGACTGCTGACTTTG.............................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................TGCAGTGTACTCCACTCTGGGAGAGGTT..................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TTGCAGAGGGGGGCTAACC.................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................ACTCTGGGAGAGGTTGAAGT................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................GGAGAGGTTGCAGAGCGG............................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ...............................................................................................................................................................TGCTAGACTCTGGAAGACTGCTGACCCC............................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................GAGGGGGGCTGTTTTTTTTT.............................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................TGCAGAGGGGGGCTGTTCGGC................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................GAGGGGGGCTGTTTTCTA................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ............................................................................................................................................................................................................TACCATACTGGGGAAAACTG.......................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................AGGGGGGCTGTTTTTTTTT.............................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .........................GAGGCCAGACTTGGAGC................................................................................................................................................................................................................ | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| .............................................................................................................................................................................................................................AAGGATGGGTGAGCT.............. | 15 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................AAAGAAGGATGGGTGA................. | 16 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGGACAGAAGGGAGA...................................................................................................................................................................................... | 17 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - |
| TGCTGGCCGCTGTGGTCAGCATGGAGAGGCCAGACTTGGAGCAGCTGAAGGTGAGGACAGAAGGGAGAAAATGTTCTGCCACTAGAGCCTGCAGTGTACTCCACTCTGGGAGAGGTTGCAGAGGGGGGCTGTTTTTCCTGGATTGAGTTAGGTGGGTTCTGCTAGACTCTGGAAGACTGCTGACCCCATGTAGCAACCTGGGAATACCATACTGGGGAAAGAAGGATGGGTGAGCTGAAGAACAGAAGCA .......................................................................................................(((((.((....)).)))))((((...((((((((......(((((.(((((...))))).))))).))))))..))...))))............................................................... .......................................................................................................104.....................................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189783 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343336 | SRR189782 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189785 | SRR553576(SRX182782) source: Testis. (testes) | SRR343337 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR343334 | SRR029054(GSM402329) MCF7_smallRNAseq. (cell line) | TAX577746(Rovira) total RNA. (breast) | SRR189787 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343335 | SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................AAGGATGGGTGAGCTGAGTC......... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TGGGGAAAGAAGGATGGTA................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................TTAGGTGGGTTCTGCTTG..................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .......................................................GACAGAAGGGAGAAAGATT................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................TAGGTGGGTTCTGCTACCG................................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |