ID: uc002gln.2_intron_1_0_chr17_8638573_r
GENE: (5)
chr17:8638523-8638757-


(2)
AGO1.ip
(3)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(27)
BREAST
(16)
CELL-LINE
(13)
CERVIX
(9)
HEART
(1)
HELA
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(69)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
CAAGGCTGCAGATGCGCTTTGACCGTGCCCGCAGCAATGTCATCTTCTGGGTGAGGGGCCCGGGGCGGGCCGGGGGCTCCCAGGCACTGGGTGAGTGCGGGCCCTGAGCATACACACACACACATACACACAAACACACACACACCACATGCTGTGCTCATGCCCCGTCCTTATCCACTCTCCAGGAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCT
..................................................((..(((((((..((.(((((...)))))))..(((((.....))))))))))))..))..............................................................................................................................
..................................................51...................................................................................136.................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343336SRR343337SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343335TAX577743(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577745(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532880(GSM532880)
G659T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR343334GSM532877(GSM532877)
G691N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189783SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR040043(GSM532928)
G428T. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
GSM532889(GSM532889)
G576N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532873(GSM532873)
G699N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
....................................................GAGGGGCCCGGGGCGGG......................................................................................................................................................................17675.0075.0011.830.33--0.67-1.000.170.670.832.50-1.001.001.502.33-2.50-0.831.001.671.501.17-2.00-0.33-1.171.830.67----1.170.500.830.831.170.501.171.170.830.830.330.170.170.171.170.170.170.830.670.671.00-------------1.00----------0.830.830.170.830.830.830.500.500.670.670.670.500.500.33-0.500.500.500.500.330.500.500.500.170.500.330.330.330.33-0.33-0.330.330.170.170.170.170.170.170.170.170.17-0.170.170.170.170.170.170.170.170.170.17-0.170.170.170.170.170.170.170.170.170.170.170.170.170.17--------
....................................................GAGGGGCCCGGGGCGG.......................................................................................................................................................................16818.2518.25-0.25--5.00---0.50-0.12--0.25---0.12-0.120.500.120.250.38-0.120.38---0.250.25----0.250.250.380.880.380.120.380.380.380.25-0.120.12----0.120.120.38----1.00--------------------0.120.120.38-----0.120.120.120.120.250.380.38-0.120.120.120.25-----0.120.120.12-------0.12----------------------------------0.120.120.120.120.120.120.12
.....................................................AGGGGCCCGGGGCGGGAA....................................................................................................................................................................1817.000.00------6.00--2.00--2.00-2.00---3.00------------------------------1.00--1.00---------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTGGT....................................................................................................................................................................1910.000.009.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTT....................................................................................................................................................................1967.0075.005.00---------------1.00----------------1.00----------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTGG.....................................................................................................................................................................186.000.004.00-------1.00---------------------------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................TGAGGGGCCCGGGGCGGGG.....................................................................................................................................................................1915.004.00-------------------1.001.00---2.00------------1.00------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTG....................................................................................................................................................................1965.0075.002.00------1.00-------------------------1.00-----------------------------------------1.00----------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGA.....................................................................................................................................................................1864.0075.002.00---------1.00------------------1.00--------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGT.....................................................................................................................................................................174.000.00-1.00-------1.00-----------1.00-----------------------------------------------1.00----------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGT.....................................................................................................................................................................1864.0075.003.00------------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...................................................TGAGGGGCCCGGGGCGGG......................................................................................................................................................................1814.004.00---------------------------2.00------------------1.00-----------------1.00---------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCGT....................................................................................................................................................................1984.0018.254.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGC.....................................................................................................................................................................1733.333.33--------0.33----0.33---0.33--0.33----0.33-----0.33------------0.33--------------------------------------0.33---0.33-------0.33--------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGAA....................................................................................................................................................................1963.0075.00------1.00----------------------------2.00--------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGGG.....................................................................................................................................................................2013.002.00----1.00---1.00----1.00------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTGT.....................................................................................................................................................................182.000.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTC....................................................................................................................................................................1962.0075.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGA......................................................................................................................................................................1782.0018.251.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGG.......................................................................................................................................................................1822.002.00----0.50---0.50---------------0.50----------------------------------------0.50--------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTTC...................................................................................................................................................................2062.0075.001.00----------------------------------------------------------------------------1.00--------------------------------------------------------------------------------
.........................................................GCCCGGGGCGGGCCGGGCG...............................................................................................................................................................192.000.00-------2.00------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGAG.....................................................................................................................................................................1882.0018.251.00---------------------------------------------------------1.00---------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGAT....................................................................................................................................................................1962.0075.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCGC....................................................................................................................................................................1982.0018.252.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGG......................................................................................................................................................................1912.002.00----------------------1.00----------------------------------------1.00----------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTG......................................................................................................................................................................172.000.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGGCT....................................................................................................................................................................1771.861.711.71----------------------------0.14--------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGGC.....................................................................................................................................................................1671.711.71-0.29------0.14--------------0.14-------0.29--------0.14------------0.140.29-------------------------------------0.14---0.14-------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGCT....................................................................................................................................................................1931.671.331.33--------------------------------------------0.33----------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGC.....................................................................................................................................................................1831.331.33----------------0.330.33------------------0.33-------------------------------------------------------------------0.33-----------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGTC....................................................................................................................................................................181.000.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGCCGCCGG...............................................................................................................................................................231.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCG........................................................................................................................................................................1721.001.00-------------------------------0.50------0.50-----------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCACC...................................................................................................................................................................2081.0018.25----------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
.......................................................GGGCCCGGGGCGGGCCCGGC................................................................................................................................................................201.000.00------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGGGC....................................................................................................................................................................2111.002.00-----------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTC......................................................................................................................................................................171.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTTG.....................................................................................................................................................................181.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGGGGCCCGGGGCGG.......................................................................................................................................................................1721.001.00---------0.500.50---------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGATA...................................................................................................................................................................191.000.00----------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCAT....................................................................................................................................................................1981.0018.251.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGATA...................................................................................................................................................................2061.0075.00------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGATC...................................................................................................................................................................2061.0075.00---------------------------------------------------------1.00----------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGTGGA..................................................................................................................................................................201.000.00-------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGC......................................................................................................................................................................1921.002.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................ATACACACACACACATACACAGAAT.....................................................................................................251.000.00---------------------------------------------------1.00----------------------------------------------------------------------------------------------------------
...........................................................CCGGGGCGGGCCGGGT................................................................................................................................................................161.000.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGCGTC...................................................................................................................................................................191.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGG......................................................................................................................................................................1501.001.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................ATACACACACACACATACTCAA........................................................................................................221.000.00------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TCCAGAACACCGCAGCCAAGAAGACC.....2611.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTTCC..................................................................................................................................................................2161.0075.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGCGCG...................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................TACACACACACACATACACA.........................................................................................................2001.001.00----------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCT.....................................................................................................................................................................1881.0018.251.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTGCT....................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGTA....................................................................................................................................................................181.000.00------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGTT....................................................................................................................................................................181.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCGA....................................................................................................................................................................1981.0018.251.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGA......................................................................................................................................................................1921.002.00----------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGTGGC....................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGGGGCCCGGGGCGGGGC....................................................................................................................................................................2011.004.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGCTG....................................................................................................................................................................1981.0018.251.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGCGGGGTGC..................................................................................................................................................................2311.002.00----------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGAG....................................................................................................................................................................1961.0075.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGTTTT..................................................................................................................................................................2161.0075.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGTTCG..................................................................................................................................................................201.000.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGCCCGGGGCGGGCA....................................................................................................................................................................1830.673.33----------------------------------------------------------------------------------------0.33-----------------------0.33---------------------------------------------
......................................................GGGGCCCGGGGCGGGCA....................................................................................................................................................................1770.571.710.57-------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGGGGCCCGGGGCG........................................................................................................................................................................1620.500.50-----------------------------------------------------------------0.50--------------------------------------------------------------------------------------------
..................................................GTGAGGGGCCCGGGGC.........................................................................................................................................................................1660.500.50--------0.17-------------------------------------------------------------------------------------------------------------------0.17----------0.17----------------------
......................................................GGGGCCCGGGGCGGGCC....................................................................................................................................................................1740.500.500.50-------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGGCAG...................................................................................................................................................................2030.331.33--------------------------------------------------------------------------------------------------------------0.33-----------------------------------------------
.....................................................AGGGGCCCGGGGCGGGCTC...................................................................................................................................................................1930.333.33----------------------------0.33---------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGGCCCCG.................................................................................................................................................................2040.250.50-------0.25------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGGCAA...................................................................................................................................................................1870.141.710.14-------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................GGGGCCCGGGGCGGGCTC...................................................................................................................................................................1870.141.71------------------------------------------------------------------------------------------------------------------------------------------------------0.14-------
......................................................GGGGCCCGGGGCGGGCTA...................................................................................................................................................................1870.141.710.14-------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
CAAGGCTGCAGATGCGCTTTGACCGTGCCCGCAGCAATGTCATCTTCTGGGTGAGGGGCCCGGGGCGGGCCGGGGGCTCCCAGGCACTGGGTGAGTGCGGGCCCTGAGCATACACACACACACATACACACAAACACACACACACCACATGCTGTGCTCATGCCCCGTCCTTATCCACTCTCCAGGAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCT
..................................................((..(((((((..((.(((((...)))))))..(((((.....))))))))))))..))..............................................................................................................................
..................................................51...................................................................................136.................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343336SRR343337SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343335TAX577743(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577745(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532880(GSM532880)
G659T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR343334GSM532877(GSM532877)
G691N. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189783SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR040043(GSM532928)
G428T. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
GSM532889(GSM532889)
G576N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532873(GSM532873)
G699N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
..........................................................CCCGGGGCGGGCCGGGGA............................................................................................................................................................... 1811.000.00-8.00-----3.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAAATG......... 199.000.00--3.002.00-3.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAAGATG........ 208.000.00--1.003.00-3.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAAGAATG....... 218.000.00--4.004.00----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................CCCTCACCCAGAAGATGACATTG.................................................................................................................................................................................. 2312.002.00-----------2.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAAACG......... 192.000.00-----2.00--------------------------------------------------------------------------------------------------------------------------------------------------------
...............................CAGCAATGTCATCTTCTGGGTGAGGGGCAGGC............................................................................................................................................................................ 321.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAATG.......... 181.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGAACACCGCAGCCAAGAAT........ 201.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GCATACACACACACACATACACACAAATGC.................................................................................................. 301.000.00-------------------------------------------------------------------------------1.00------------------------------------------------------------------------------
..........................................................CCCGGGGCGGGCCGGGGCC.............................................................................................................................................................. 191.000.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
..................................CCTCACCCAGAAGATGACATTG................................................................................................................................................................................... 2211.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................AAACACACACACACCACACAA................................................................................... 211.000.00--------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................TGGATAAGGACGGGGCATGAGCAC.......................................................... 2411.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GGGCGGGCCGGGGGCTTC........................................................................................................................................................... 181.000.00-------------------------------------------------------------------1.00------------------------------------------------------------------------------------------
.................................ACCCAGAAGATGACATTGC....................................................................................................................................................................................... 1911.001.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
....................................................GAGGGGCCCGGGGCGGT...................................................................................................................................................................... 1781.000.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CACATGCTGTGCTCATCTTC...................................................................... 201.000.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------
..........................................................CCCGGGGCGGGCCGGGGGGA............................................................................................................................................................. 201.000.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................CCCCTCACCCAGAAGATGACATTG................................................................................................................................................................................. 2411.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------------------------------------
..........................................................CCCGGGGCGGGCCGGGGGA.............................................................................................................................................................. 191.000.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................CACCCAGAAGATGACATTG...................................................................................................................................................................................... 1911.001.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------
....................................................CCGCCCCGGGCCCCTC....................................................................................................................................................................... 1680.120.12-------------------------------------------------------------------------------------------------------------------0.12------------------------------------------