ID: uc002gkr.2_intron_0_0_chr17_8152658_f.5p
GENE: (1)
chr17:8152608-8152857+


(9)
B-CELL 		(8)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AACGCGCGCGACGATTCGAGGTGCTCTGTGGCCGCGAGTGCATCTTCCACGTGAGTATAGTTACCGCGTGCGGACCTGGATCCTCCTCCAGGTGCAGCGTTTCGTCATCTAGCCCAAGCTTGGTCTGGCGGCTTCAGTATCCCCACCGGGCCGAGCTGTGTCTACTTGGTGCCCGCGTATTTGCTTTAGTGGAGGCGTCCATTCGTCCTATCTTGCGTGCGTTCCGCAGACCCCAGGCATGGCCGACCCC
................................................................(((.(((..(((((((......)))))))))))))...(((((..(((....((((((((((((.((...........)).))))))))))))....)))..)))))...............................................................................
................................................................65.........................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)
.....................................................................GCGGACCTGGATCCTCCT...................................................................................................................................................................1816.006.006.00---------------------------------------------------------------
..........ACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................1816.006.001.001.001.00---------------------------1.00------1.001.00-------------------------
........................................................................................................................................................................................................ATTCGTCCTATCTTGCGTGCGTTCCG........................2615.005.00----5.00-----------------------------------------------------------
...................................................................................TCCTCCAGGTGCAGCGTTT....................................................................................................................................................1914.004.00-----4.00----------------------------------------------------------
..............................................................ACCGCGTGCGGACCTGGAT.........................................................................................................................................................................1913.003.00------------1.00----------------------1.00--------1.00-------------------
.............................................................TACCGCGTGCGGACCTGGATC........................................................................................................................................................................2113.003.003.00---------------------------------------------------------------
.....................................................................................................................................................GCCGAGCTGTGTCTACTTG..................................................................................1913.003.00-3.00--------------------------------------------------------------
.................................................................................................CGTTTCGTCATCTAGCCCAAG....................................................................................................................................2113.003.00-2.00------------------------------1.00-------------------------------
..............................................................ACCGCGTGCGGACCTGGA..........................................................................................................................................................................1813.003.00---1.00-------------2.00----------------------------------------------
...GCGCGCGACGATTCGAGG.....................................................................................................................................................................................................................................1812.002.00-2.00--------------------------------------------------------------
.....GCGCGACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................2312.002.00---2.00------------------------------------------------------------
..................AGGTGCTCTGTGGCCGCGAGTG..................................................................................................................................................................................................................2212.002.00--1.00---------------------------------1.00---------------------------
..........................................................................................................................................................................................................................GCGTTCCGCAGACCCCAGGCATGGC.......2512.002.00-------------------1.00-----------------------------1.00--------------
.........GACGATTCGAGGTGCTCTGTGGCCGC.......................................................................................................................................................................................................................2612.002.00---------2.00------------------------------------------------------
.......GCGACGATTCGAGGTGCTCTGTGGCCG........................................................................................................................................................................................................................2712.002.00----------------2.00-----------------------------------------------
......................................................................CGGACCTGGATCCTCCTCC.................................................................................................................................................................1912.002.00--2.00-------------------------------------------------------------
.............................................................................................................................................CCCACCGGGCCGAGCTG............................................................................................1712.002.00--2.00-------------------------------------------------------------
........CGACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................2012.002.00---------------------------1.00---------------------------1.00--------
.........GACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................1912.002.00-------------------------------1.00----------------1.00---------------
..................................................................................................................................................................................ATTTGCTTTAGTGGAGGCGTCCATTCGTCC..........................................3011.001.00---------------1.00------------------------------------------------
............................................................................................................................................CCCCACCGGGCCGAGCTG............................................................................................1811.001.001.00---------------------------------------------------------------
...............................................................................ATCCTCCTCCAGGTGCAGCGTTTCGTCACCT............................................................................................................................................311.000.00------1.00---------------------------------------------------------
...................................................................................................................AAGCTTGGTCTGGCGGCTTCT..................................................................................................................211.000.00-------------------------------------------1.00--------------------
..............................GCCGCGAGTGCATCTTCC..........................................................................................................................................................................................................1811.001.00----------1.00-----------------------------------------------------
.........................................................................................................................................................................................................TTCGTCCTATCTTGCGTG...............................1811.001.00----------------------------------------1.00-----------------------
................................................................................................................................................ACCGGGCCGAGCTGTGTCTACTTGGTG...............................................................................2711.001.00-------1.00--------------------------------------------------------
................................................................CGCGTGCGGACCTGGATC........................................................................................................................................................................1811.001.001.00---------------------------------------------------------------
..........................................................................................................................................ATCCCCACCGGGCCGAGCTG............................................................................................2011.001.00-----------------------1.00----------------------------------------
....................................................................................................................................................GGCCGAGCTGTGTCTACTTGGTGCCC............................................................................2611.001.00--------------1.00-------------------------------------------------
....CGCGCGACGATTCGAGGTG...................................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00------------
.........................................................................ACCTGGATCCTCCTCCAGGTGCAGCG.......................................................................................................................................................2611.001.00-----------------------------1.00----------------------------------
...........................................................GTTACCGCGTGCGGACCTGGATCCT......................................................................................................................................................................2511.001.00------------------------1.00---------------------------------------
..................................................................................................................................................CGGGCCGAGCTGTGTCTACTTGG.................................................................................2311.001.00-1.00--------------------------------------------------------------
........................................................................................................................................................................................................................................CCAGGCATGGCCGACGGG181.000.00--------------------------------------------------------------1.00-
.............................................................................................GCAGCGTTTCGTCATCTAGCCCAAGCTTG................................................................................................................................2911.001.00--------------------1.00-------------------------------------------
...................................................................GTGCGGACCTGGATCCTC.....................................................................................................................................................................1811.001.00---1.00------------------------------------------------------------
.......GCGACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................2111.001.00---1.00------------------------------------------------------------
...................................................................................................................AAGCTTGGTCTGGCGGCT.....................................................................................................................1811.001.00--------1.00-------------------------------------------------------
.....................................................................................................................................................GCCGAGCTGTGTCTACTTGG.................................................................................2011.001.00-1.00--------------------------------------------------------------
............................................................TTACCGCGTGCGGACCTGGA..........................................................................................................................................................................2011.001.00-----------------------------------------1.00----------------------
.....................................................................................................................................................GCCGAGCTGTGTCTACTTGGTGCCCG...........................................................................2611.001.00---------------------1.00------------------------------------------
................................................................CGCGTGCGGACCTGGATCCTC.....................................................................................................................................................................2111.001.00--1.00-------------------------------------------------------------
...................................................................................................................AAGCTTGGTCTGGCGGATTT...................................................................................................................201.000.00--------------------------------------------------------1.00-------
..............TTCGAGGTGCTCTGTGGCCGCG......................................................................................................................................................................................................................2211.001.00------------1.00---------------------------------------------------
.....................................................................................................................GCTTGGTCTGGCGGCTT....................................................................................................................1711.001.00------------------1.00---------------------------------------------
.............................................................................................................................................CCCACCGGGCCGAGCTGT...........................................................................................1811.001.00------------------------------------------1.00---------------------
..CGCGCGCGACGATTCGAGGTGCTCTG..............................................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00----------
.............ATTCGAGGTGCTCTGTGGCCGCG......................................................................................................................................................................................................................2311.001.00---------------------------------------------1.00------------------
.................................................................GCGTGCGGACCTGGATC........................................................................................................................................................................1711.001.00---1.00------------------------------------------------------------
................................................................................................................................................ACCGGGCCGAGCTGTGT.........................................................................................1711.001.00----------------------------1.00-----------------------------------
...............................................................CCGCGTGCGGACCTGGATCCTCCTCC.................................................................................................................................................................2611.001.00-------1.00--------------------------------------------------------
.......................................GCATCTTCCACGTGAGTATAGTTA...........................................................................................................................................................................................2411.001.00------------------------------------------------------1.00---------
.........................................................TAGTTACCGCGTGCGGACCTG............................................................................................................................................................................2111.001.00-------------------------1.00--------------------------------------
............................................................................................................................................CCCCACCGGGCCGAGCTGTGT.........................................................................................2111.001.00----------------------------------------------1.00-----------------
.....................................................................................................................GCTTGGTCTGGCGGCTTC...................................................................................................................1811.001.00--------1.00-------------------------------------------------------
..........................................................................................................................................ATCCCCACCGGGCCGAGCTGTG..........................................................................................2211.001.00----------------------------------------------------------1.00-----
....................................................................................................................................................GGCCGAGCTGTGTCTACTTGG.................................................................................2111.001.00----------------------1.00-----------------------------------------
...........................................................................................................TCTAGCCCAAGCTTGGTCTGGCGGCC.....................................................................................................................261.000.00------1.00---------------------------------------------------------
...........................................................................................................................................................CTGTGTCTACTTGGTGCCCGCGTATTTGCTTT...............................................................3211.001.00-----------------------------------------------1.00----------------
..........................................................AGTTACCGCGTGCGGACCTGGAT.........................................................................................................................................................................2311.001.00---------------------------------------1.00------------------------
...................GGTGCTCTGTGGCCGCGAGTG..................................................................................................................................................................................................................2111.001.00--------------------------------------------------1.00-------------
..................................................................................................................................................................................ATTTGCTTTAGTGGAGGCGTCCATTCGTCCC.........................................3111.001.00---------------1.00------------------------------------------------
....................................................................................................................AGCTTGGTCTGGCGGCTTCAGTA...............................................................................................................2311.001.00------1.00---------------------------------------------------------
............................................................................................................................................CCCCACCGGGCCGAGCT.............................................................................................1711.001.00-----------1.00----------------------------------------------------
......................................................................................TCCAGGTGCAGCGTTTCG..................................................................................................................................................1811.001.00----------------------------------------------------1.00-----------
..................AGGTGCTCTGTGGCCGC.......................................................................................................................................................................................................................1711.001.00----------------------------------1.00-----------------------------
..............................................................ACCGCGTGCGGACCTGG...........................................................................................................................................................................1711.001.00-----------------------------------------------------------1.00----
................................................................................................................CCCAAGCTTGGTCTGGCGGC......................................................................................................................2011.001.00----------1.00-----------------------------------------------------
..................................................GTGAGTATAGTTACCGCGTGCGGACCTG............................................................................................................................................................................2811.001.00-1.00--------------------------------------------------------------
....................................................................................................................AGCTTGGTCTGGCGGCTT....................................................................................................................1811.001.00-----------1.00----------------------------------------------------
........................................................................................................................TGGTCTGGCGGCTTCA..................................................................................................................1611.001.00-------1.00--------------------------------------------------------

Antisense strand
AACGCGCGCGACGATTCGAGGTGCTCTGTGGCCGCGAGTGCATCTTCCACGTGAGTATAGTTACCGCGTGCGGACCTGGATCCTCCTCCAGGTGCAGCGTTTCGTCATCTAGCCCAAGCTTGGTCTGGCGGCTTCAGTATCCCCACCGGGCCGAGCTGTGTCTACTTGGTGCCCGCGTATTTGCTTTAGTGGAGGCGTCCATTCGTCCTATCTTGCGTGCGTTCCGCAGACCCCAGGCATGGCCGACCCC
................................................................(((.(((..(((((((......)))))))))))))...(((((..(((....((((((((((((.((...........)).))))))))))))....)))..)))))...............................................................................
................................................................65.........................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)
....................................................................................................................................................................................................CAAGATAGGACGAATGGAC................................... 1912.002.00-------------2.00--------------------------------------------------
...............................................................................ATCCTCCTCCAGGTGTTT......................................................................................................................................................... 181.000.00--------------------------1.00-------------------------------------
..................................................................................................................................................................................................AGATAGGACGAATGGACGC..................................... 1911.001.00--1.00-------------------------------------------------------------
..............................................................................................CAGCGTTTCGTCATCTAGAAA....................................................................................................................................... 211.000.00--------------1.00-------------------------------------------------
............................................................................................................................................................................................................................CGGCCATGCCTGGGGTCTGCGGAAC..... 2511.001.00---------------------------------1.00------------------------------
......................................................................................................................................................................................................ACGCACGCAAGATAGGACGAATGG............................ 2411.001.00-------------------------------------------------------------1.00--
..................................................................................................................................................................................................CAAGATAGGACGAATGGACGC................................... 2111.001.00----1.00-----------------------------------------------------------
..................................................................................................................................GCTCGGCCCGGTGGGGATACTGAAGC.............................................................................................. 2611.001.00---------------------------------------------------------1.00------
..................................................................................................................................GCTTCAGTATCCCCATCAA..................................................................................................... 191.000.00------------------------------------------------------------1.00---
........................................................................GGAGGAGGATCCAGGTC................................................................................................................................................................. 1720.500.50---------------------------------------------------------------0.50