ID: uc002gct.0
GENE: FAM64A(1)
chr17:6347759-6348008+


(2)
AGO2.ip 		(24)
B-CELL 		(10)
BRAIN 		(13)
BREAST 		(56)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(5)
HELA 		(5)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(7)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TGGGCGAGGAGCAGCTGTGCTGCGGCTGTGCTCGGCCTTAGTGGTGTCGGGTGAGTGCGGGCTGGGCACAAGTTTCGCCCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTGGACTCAAAACAATTTTTTTGTTCGGAGGGGAGGGCATCAGGTTCTGTTCACAGGGGAGGGCATCAGGTTCGGACACGCACGGCCTGTGGGGTCGTCTGGGTACCACAAGAAGTCGGATCGAAATCGGGGCGTCTG
.........................................................(((.(((((((((((.......))))).)))))).)))..((((....)))).............................................................................................................................................
..................................................51................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM339994(GSM339994)
hues6. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782SRR038857(GSM458540)
D20. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189787TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM339996(GSM339996)
hues6Neuron. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...................................................TGAGTGCGGGCTGGGCACAAGT.................................................................................................................................................................................221138.00138.0035.0018.0023.00-10.00--2.003.001.003.00-1.001.007.00-2.001.003.00-6.002.00-2.001.00-------1.00---1.002.00--1.00---1.00-1.001.00----1.00--------1.00----2.00--1.00------1.00---1.00---------------------------1.00----------------------1.00--
..................................................GTGAGTGCGGGCTGGGCACAAGT.................................................................................................................................................................................23165.0065.008.004.007.00-1.00--3.001.00-2.00-5.00---1.00--2.00-2.00-1.001.00-4.005.00---1.00-----1.00--1.00----2.00--2.003.00--1.00--------1.00-------1.00---1.00------------1.00-----------------------------1.00-----------1.001.00----
...................................................TGAGTGCGGGCTGGGCACAAG..................................................................................................................................................................................21126.0026.003.003.00--2.00----1.00-2.00----2.00-3.00----2.00----1.00---------1.00-1.00----------1.00-----2.00---------------------------------------------------------1.00----1.00-------------
...........CAGCTGTGCTGCGGCTCT.............................................................................................................................................................................................................................18121.001.00-------------4.00-----1.00-----1.00----1.00---3.00----2.00---1.00------2.00-----1.00-----2.00--------1.00-----------------------------1.00-----1.00--------------------------
............AGCTGTGCTGCGGCTCTC............................................................................................................................................................................................................................1821.000.00---------1.00---------2.00-----2.00-------------1.00----1.00-----1.00--2.00----2.00----1.00--------------1.00--1.001.00-------------1.00---1.00-----------------1.001.00----1.00---------
............AGCTGTGCTGCGGCTCT.............................................................................................................................................................................................................................1718.000.00-------------------2.00--3.00--2.00--------1.00---------------------2.00------1.00---2.00------1.00------------1.00----1.00-----------------------------1.00--1.00--------
...................................................TGAGTGCGGGCTGGGCACA....................................................................................................................................................................................19114.0014.00--1.00-----1.00--6.00---3.00------------1.00----1.00-----------------1.00----------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTT................................................................................................................................................................................23111.0011.00-3.001.00-1.00-----1.00-1.00--------1.00-------------------1.00----------------------1.00----------------------------------------1.00----------------------------
..................................................GTGAGTGCGGGCTGGGCACAAT..................................................................................................................................................................................2219.003.00-------8.001.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACA....................................................................................................................................................................................2019.009.001.002.00-------------3.00---------------------------------------3.00------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCAC.....................................................................................................................................................................................1819.009.00--1.00--------1.00---2.00---------------------1.00-------1.00------------------------------------------1.00--------------1.00-----------------1.00------------
...................................................TGAGTGCGGGCTGGGCACAAGA.................................................................................................................................................................................2219.0026.001.001.00--1.00----1.00----------1.00--1.00-----3.00--------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTA................................................................................................................................................................................2318.00138.00-2.00--1.00----1.001.00-----------------1.00-------------------------------1.00-----------1.00-------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAA...................................................................................................................................................................................2018.008.00-2.00--1.00----2.00-------1.00------------------------------------------1.00--------------------------------1.00----------------------------------------
................................CGGCCTTAGTGGTGTCGGG.......................................................................................................................................................................................................1916.006.00------3.00----------------------------------------------------2.00------------------------1.00-------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAG..................................................................................................................................................................................2216.006.00-1.00--------1.00------1.00--------------------1.00-------------------------------1.00-------------------------------------------------------1.00-------
............AGCTGTGCTGCGGCTCTCG...........................................................................................................................................................................................................................195.000.00----------------------3.00-------2.00-------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTAT...............................................................................................................................................................................2415.00138.00--------1.00------------1.00---------1.00----1.00----------------------------------------1.00--------------------------------------------------------
...........CAGCTGTGCTGCGGCTCTCG...........................................................................................................................................................................................................................2015.001.00-----------------------------------3.00--------1.00----------------------------------------------------------------1.00------------------------
...............................TCGGCCTTAGTGGTGTCGGG.......................................................................................................................................................................................................2015.005.00------4.00----------1.00--------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAA..................................................................................................................................................................................2215.003.00---------2.00------------------1.00----1.00-------1.00--------------------------------------------------------------------------------------------
................GTGCTGCGGCTGTGCTCGGC......................................................................................................................................................................................................................2014.004.00------4.00-------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGC.................................................................................................................................................................................2214.0026.00------------------------------------1.00-----3.00-------------------------------------------------------------------------------------------
.........................................................................................AGGCTGGAGTGCAATGGCGCGACCC........................................................................................................................................253.000.00---3.00----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAA...................................................................................................................................................................................2113.003.001.00-1.00-----------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGA.................................................................................................................................................................................2313.006.00----------1.00------------------------------------1.00----------------------------------------------1.00---------------------------------------
.........................................................................................AGGCTGGAGTGCAATGGCGCGAAA.........................................................................................................................................243.000.00-------------------------------1.00-----------------------------------------------1.00------------------1.00-----------------------------------
...................................................TGAGTGCGGGCTGGGCACCAGT.................................................................................................................................................................................2213.009.00-1.00-------1.00------------------------------------------------------1.00---------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACT....................................................................................................................................................................................1912.009.00--------1.00------------------------1.00----------------------------------------------------------------------------------------------------
...........CAGCTGTGCTGCGGCTCTAA...........................................................................................................................................................................................................................2012.001.00-------------2.00------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCAC.....................................................................................................................................................................................1912.002.00--------1.00----------------------1.00------------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGCA........................................................................................................................................................242.000.00---2.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGAGCGTG....................................................................................................................................................282.000.00---2.00----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................AGGTTCGGACACGCACGG.....................................................1812.002.00------------------------------------------------------2.00-------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCATAAG..................................................................................................................................................................................2112.002.00----------------1.00-------------------------------------1.00-------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTAA...............................................................................................................................................................................2412.00138.00------------1.00----------1.00--------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAATT.................................................................................................................................................................................2212.008.00-----------------------------------------1.00------1.00-------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGTAT...............................................................................................................................................................................2512.0065.00----------------------------------------------------1.00---------------------------------------------------------1.00-----------------------
...................................................TGAGTGCGGGCTGGGCACAAGTTT...............................................................................................................................................................................2412.002.00-----------------------------1.00-------------1.00------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACATTA.................................................................................................................................................................................2212.0014.00-2.00------------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGATT...............................................................................................................................................................................2412.0026.00--------------2.00-----------------------------------------------------------------------------------------------------------------------
............AGCTGTGCTGCGGCTCTT............................................................................................................................................................................................................................182.000.00----------------------1.00------------------------------1.00--------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCAT.....................................................................................................................................................................................1812.002.00----------1.00----------------------------------------------1.00----------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCA......................................................................................................................................................................................1712.002.00--------1.00----------------------------------------------------------------------------1.00------------------------------------------------
...........................GTGCTCGGCCTTAGTGG..............................................................................................................................................................................................................1712.002.00------2.00-------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCAAAA...................................................................................................................................................................................2012.002.00--------1.00----------------------------------1.00------------------------------------------------------------------------------------------
....................................................GAGTGCGGGCTGGGCACAAGT.................................................................................................................................................................................2112.002.00-1.001.00-----------------------------------------------------------------------------------------------------------------------------------
...............................TCGGCCTTAGTGGTGTCGG........................................................................................................................................................................................................1912.002.00------2.00-------------------------------------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGGG........................................................................................................................................................242.000.00-----2.00--------------------------------------------------------------------------------------------------------------------------------
.........................................................................TTCGCCCTTGTTGCCCAGGCTGGAGAG......................................................................................................................................................272.000.00-----2.00--------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAATTT................................................................................................................................................................................2312.008.00-2.00------------------------------------------------------------------------------------------------------------------------------------
...........CAGCTGTGCTGCGGCTCC.............................................................................................................................................................................................................................1812.001.00-------------------------1.00------1.00-----------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCGGAG.........................................................................................................................................................232.000.00---2.00----------------------------------------------------------------------------------------------------------------------------------
.......................................AGTGGTGTCGGGTGAGTGCGG..............................................................................................................................................................................................2111.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------
......................................................................AGTTTCGCCCTTGTTGCCCAGGCGGAG.........................................................................................................................................................271.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................TTTCGCCCTTGTTGCCCAGGCCAG..........................................................................................................................................................241.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACCCGT.................................................................................................................................................................................2311.002.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
............AGCTGTGCTGCGGCTCTCA...........................................................................................................................................................................................................................191.000.00-----------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................TTCGCCCTTGTTGCCCAGGCTGGGG........................................................................................................................................................251.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................TTTCGCCCTTGTTGCCCAGGCTGGACGTC.....................................................................................................................................................291.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGAGTGTGC...................................................................................................................................................291.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................AGTGCGGGCTGGGCACAAGTT................................................................................................................................................................................2111.001.00------------------------1.00-------------------------------------------------------------------------------------------------------------
........................................................................TTTCGCCCTTGTTGCCCAGGCTGGGG........................................................................................................................................................261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTTAAAA............................................................................................................................................................................2711.0011.00---------------------------------------------------------------------------1.00----------------------------------------------------------
..............................................TCGGGTGAGTGCGGGCTG..........................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------------------------------1.00----------------------
.........................................................................................AGGCTGGAGTGCAATGGCGCGCCCC........................................................................................................................................251.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
................................................GGGTGAGTGCGGGCTGGGCACAAGT.................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------------------1.00--------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAATTA................................................................................................................................................................................2311.008.00--------------------------------1.00-----------------------------------------------------------------------------------------------------
........................................................................TTTCGCCCTTGTTGCCCAGGCTGGCG........................................................................................................................................................261.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCAA.....................................................................................................................................................................................1811.002.00------------------------1.00-------------------------------------------------------------------------------------------------------------
.......................................................TGCGGGCTGGGCACAA...................................................................................................................................................................................1611.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------
...........CAGCTGTGCTGCGGCT...............................................................................................................................................................................................................................1611.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAT..................................................................................................................................................................................2111.008.00----------------1.00---------------------------------------------------------------------------------------------------------------------
...........................................................GGCTGGGCACAAGTTCTTT............................................................................................................................................................................191.000.00----------------------------------------------1.00---------------------------------------------------------------------------------------
.............................................GTCGGGTGAGTGCGGGCTGG.........................................................................................................................................................................................2011.001.00-----------------------------------------------------------------1.00--------------------------------------------------------------------
...........................................................GGCTGGGCACAAGTTAG..............................................................................................................................................................................171.000.00------------------------------------------------------------------------------------------------------------------------------------1.00-
..........................................................................TCGCCCTTGTTGCCCAGGCTGGAGGGCA....................................................................................................................................................281.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGTTTT..............................................................................................................................................................................2611.001.00----1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................ACAATTTTTTTGTTCTTGC............................................................................................................191.000.00-------------------------------------------------------------------------------------------------------------------------------------1.00
..............................................TCGGGTGAGTGCGGGCTGA.........................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------------1.00------------------------------------
..................................................GTGAGTGCGGGCTGGGCATAG...................................................................................................................................................................................2111.001.00----------------------------------------------------------------------------------------------------------------1.00---------------------
..................................................GTGAGTGCGGGCTGGGCACAAGTTT...............................................................................................................................................................................2511.001.00---------------------1.00----------------------------------------------------------------------------------------------------------------
......................................................GTGCGGGCTGGGCACAAGTTT...............................................................................................................................................................................2111.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGAGAGCA....................................................................................................................................................281.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TGGCGCGATCTGGACTCAAAACA............................................................................................................................2311.001.00--------------------------------------------------------------------1.00-----------------------------------------------------------------
..GGCGAGGAGCAGCTGTGCTG....................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------1.00--------------------------------------------------
...............................................................................................................................................................................CATCAGGTTCGGACA............................................................1511.001.00------------------------------------------------------------------------------------------1.00-------------------------------------------
...........CAGCTGTGCTGCGGCTCTC............................................................................................................................................................................................................................1911.001.00------------------------------1.00-------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCA......................................................................................................................................................................................1811.001.00-----------------------------------------------1.00--------------------------------------------------------------------------------------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGACGC......................................................................................................................................................261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
......................................................................................CCCAGGCTGGAGTGCAATGGCGCGAAA.........................................................................................................................................271.000.00------------------------------------------------------------------------------------------------------1.00-------------------------------
....................................................................................TGCCCAGGCTGGAGTGCAATGGCGCGATCGGC......................................................................................................................................321.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CTTGTTGCCCAGGCTGGAGTGCTCTG.................................................................................................................................................261.000.00---------------------------------------------------------------------------------------------------------------------------1.00----------
..........................................................................TCGCCCTTGTTGCCCAGGCTGGAGGGC.....................................................................................................................................................271.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
..........................TGTGCTCGGCCTTAGTGGTGTCGGGTG.....................................................................................................................................................................................................2711.001.00------------------1.00-------------------------------------------------------------------------------------------------------------------
.........................................................................TTCGCCCTTGTTGCCCAGGCGGG..........................................................................................................................................................231.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..............................CTCGGCCTTAGTGGTGTCGGG.......................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------1.00-----------------------------------------------------------------
...........CAGCTGTGCTGCGGCTAT.............................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------------------------1.00-------------------
...................................CCTTAGTGGTGTCGGGTGA....................................................................................................................................................................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
.........................................................................................................GCGCGATCTGGACTCAAAACAATTTT.......................................................................................................................2611.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------
......................................................................AGTTTCGCCCTTGTTGCCCAGGCGGGA.........................................................................................................................................................271.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TCACAGGGGAGGGCATCAGGTTC.................................................................2311.001.00-----------------------------------------------------------------------------------------------1.00--------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGAA................................................................................................................................................................................2411.006.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................AGTTTCGCCCTTGTTGCCCAGGCTGGGG........................................................................................................................................................281.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................AGTTTCGCCCTTGTTGCCCAGGCTGGAGAGC.....................................................................................................................................................311.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
...........CAGCTGTGCTGCGGCTC..............................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------------------------------------1.00-----------------------------
..............................................................................CCTTGTTGCCCAGGCTGGAGGTC.....................................................................................................................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................TGTTGCCCAGGCTGGAGTGCAATGGCGACC...........................................................................................................................................301.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
.....................................................................AAGTTTCGCCCTTGTTGCCCAGGCTGGAGGGC.....................................................................................................................................................321.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
.....................................TTAGTGGTGTCGGGTGAA...................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------------------------------1.00--------------------
.......................................................TGCGGGCTGGGCACAAGTTT...............................................................................................................................................................................2011.001.00-----------------------------------------------------------------1.00--------------------------------------------------------------------
..............................................................................CCTTGTTGCCCAGGCTGGAGTTTAG...................................................................................................................................................251.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCAT.....................................................................................................................................................................................1911.001.00------------------------1.00-------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACACGTT................................................................................................................................................................................2311.0014.00-1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................GGTGAGTGCGGGCTGGGCAC.....................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------------------------------------------------1.00------
....................TGCGGCTGTGCTCGGTC.....................................................................................................................................................................................................................171.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.........................................................................................AGGCTGGAGTGCAATGGCGCGATCCAC......................................................................................................................................271.000.00------------------------------------1.00-------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGTAA...............................................................................................................................................................................2511.0065.00---------------------------------------------------------------------------------------------------1.00----------------------------------
...................................CCTTAGTGGTGTCGGGTGAG...................................................................................................................................................................................................2011.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------
...............TGTGCTGCGGCTGTGTGC.........................................................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------------1.00---------------------------
...................................................TGAGTGCGGGCTGGGCACAAGAAA...............................................................................................................................................................................2411.0026.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAAGTTA...............................................................................................................................................................................2411.0011.00----------------------------1.00---------------------------------------------------------------------------------------------------------
.....................................................AGTGCGGGCTGGGCACAAG..................................................................................................................................................................................1911.001.00---------------------------------------------------1.00----------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCATT....................................................................................................................................................................................1911.002.00----------------------------------------------1.00---------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACG....................................................................................................................................................................................1911.009.00----------------1.00---------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCACAT...................................................................................................................................................................................2011.0014.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGC.................................................................................................................................................................................2311.006.00-------1.00------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCGGGCTGGGCACAAGTT................................................................................................................................................................................2411.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGCGGGCTGGGCAAAGA..................................................................................................................................................................................2111.002.00------------------------1.00-------------------------------------------------------------------------------------------------------------
......................................................................AGTTTCGCCCTTGTTGCCCAGGCTGGAGGGA.....................................................................................................................................................311.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................CCCTTGTTGCCCAGGCTGGAGGAC.....................................................................................................................................................241.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
........................................................................................................GGCGCGATCTGGACTCAA................................................................................................................................1820.500.50------------------0.50-------------------------------------------------------------------------------------------------------------------
.....................................................................AAGTTTCGCCCTTGTTGCCCAGGCTGG..........................................................................................................................................................2750.200.20---0.20----------------------------------------------------------------------------------------------------------------------------------

Antisense strand
TGGGCGAGGAGCAGCTGTGCTGCGGCTGTGCTCGGCCTTAGTGGTGTCGGGTGAGTGCGGGCTGGGCACAAGTTTCGCCCTTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCTGGACTCAAAACAATTTTTTTGTTCGGAGGGGAGGGCATCAGGTTCTGTTCACAGGGGAGGGCATCAGGTTCGGACACGCACGGCCTGTGGGGTCGTCTGGGTACCACAAGAAGTCGGATCGAAATCGGGGCGTCTG
.........................................................(((.(((((((((((.......))))).)))))).)))..((((....)))).............................................................................................................................................
..................................................51................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM339994(GSM339994)
hues6. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782SRR038857(GSM458540)
D20. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR038858(GSM458541)
MEL202. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189787TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM339996(GSM339996)
hues6Neuron. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR040022(GSM532907)
G575N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................GGCTGGAGTGCAATGGCGCGATGGGA...................................................................................................................................... 262.000.00---1.00-1.00--------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGAGGCT....................................................................................................................................... 251.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATGACG...................................................................................................................................... 261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................TCAGGTTCTGTTCACAA.................................................................................. 171.000.00----------------------------------------------------------------------------------------------------------------------------------1.00---
..............................................................................................................................................................................GTCCGAACCTGATGC............................................................. 1511.001.00---------------------------------------------------------------------------------------------------------------------1.00----------------
........................................................................................CAGGCTGGAGTGCAATGGCGCGATCTTCTC.................................................................................................................................... 301.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATCTGGGA.................................................................................................................................... 281.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATGGCA...................................................................................................................................... 261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATGGTC...................................................................................................................................... 261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATGGAC...................................................................................................................................... 261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATGTC....................................................................................................................................... 251.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CCCTGTGAACAGAACCTGA................................................................................ 1911.001.00-------------------------------------------------------------------------------------------1.00------------------------------------------
..........................................................................................GGCTGGAGTGCAATGGCGCGATCTGGAC.................................................................................................................................... 281.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------