ID: uc002gcc.1_intron_2_0_chr17_5383903_r.3p
GENE: DERL2(4)
chr17:5383853-5384102-


(1)
AGO2.ip 		(4)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(3)
HELA 		(4)
OTHER 		(12)
SKIN 		(2)
XRN.ip

Sense strand
TCTCGATAATTTAGCCTAAGCAGATTTTTGCCTGATTGCTCTGGGTAATTATTTTCTGGGTGTTTCTCCTTCTATTCTAAAGATGTAACAACTTGACTTTTCCAATTCAAACTTCTGTTAGAACACAATCTTTAGTTCTCCTGCTCAGTCTTTCCTATTAAACTTTTAATGTTGATATTTTCCTTAATGCCATCTGCTAGCTTTTTGGTCTGTTTGTGAGCTTAGTTTTCTTGGGCCAGGCCTTTACAAT
.........................................................................................................(((.(((....))).))).........((((......((...........((((.(((.......)))))))...........)).....))))...................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029126(GSM416755)
143B. (cell line)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
...................................................................................................................................................................................TTCCTTAATGCCATCTGCTAGA.................................................22129.003.0022.00--1.00--1.00----------1.00---1.00-----------1.001.00----1.00--
..................................................................................................................................................................................TTTCCTTAATGCCATCTGCTAGA.................................................23122.009.0013.004.00-----1.00-------1.00---1.001.00------1.00--------------
..................................................................................................................................................................................TTTCCTTAATGCCATCTGCTAG..................................................2219.009.00---2.00--1.00-2.00----------------1.00---------1.00--1.00-1.00-
................................................................................................................................................................................................................TCTGTTTGTGAGCTTTATC.......................195.000.00--5.00---------------------------------------
..................................................................................................................................................................................TTTCCTTAATGCCATCTGCTAGAA................................................2413.009.002.00------1.00----------------------------------
...................................................................................................................................................................................TTCCTTAATGCCATCTGCTAGAA................................................2313.003.001.00---2.00-------------------------------------
...................................................................................................................................................................................TTCCTTAATGCCATCTGCTAG..................................................2113.003.001.00---------------1.00-------------1.00-----------
...........................................................................................................................................................................TTGATATTTTCCTTAATGCCATCTGCTAGA.................................................302.000.00------------2.00-----------------------------
..................................................................................................................................................................................TTTCCTTAATGCCATCTGCTAGC.................................................2311.001.00-1.00----------------------------------------
.......................................................................................................................................................................................TTAATGCCATCTGCTAG..................................................1711.001.00------------------------------------1.00-----
...............................................................................................ACTTTTCCAATTCAAACTTCT......................................................................................................................................2111.001.00----------------------------1.00-------------
.......................................................................................................................................................................................................GCTTTTTGGTCTGTTTTGGT...............................201.000.00----------1.00-------------------------------
.............................................................................................................................................................................................................TGGTCTGTTTGTGAGCCCTC.........................201.000.00-------------------------------1.00----------
.........................................................................................................................................................................................AATGCCATCTGCTAGCTTTTGG...........................................221.000.00---------1.00--------------------------------
.....................................................................................................................................................................................................................................CTTGGGCCAGGCCTTTAC...1811.001.00-----1.00------------------------------------
.......................................................................................................................................TTCTCCTGCTCAGTCTTTCCTATTAAACTTTTAATGTTGATATTTTCCTTAATGCCATCTGCTAG..................................................6511.001.00-------------1.00----------------------------
..........................................................................................................................................................................................................TTTTGGTCTGTTTGTGAGCTTAGTTTTCTTGGGCCA............3611.001.00-----------------------------1.00------------
.....................................................................................................................................................................................................TAGCTTTTTGGTCTGGT....................................171.000.00----------1.00-------------------------------
...............................................................................................................................................................................................................................AGTTTTCTTGGGCCAGG..........1720.500.50-----------------------------------------0.50

Antisense strand
TCTCGATAATTTAGCCTAAGCAGATTTTTGCCTGATTGCTCTGGGTAATTATTTTCTGGGTGTTTCTCCTTCTATTCTAAAGATGTAACAACTTGACTTTTCCAATTCAAACTTCTGTTAGAACACAATCTTTAGTTCTCCTGCTCAGTCTTTCCTATTAAACTTTTAATGTTGATATTTTCCTTAATGCCATCTGCTAGCTTTTTGGTCTGTTTGTGAGCTTAGTTTTCTTGGGCCAGGCCTTTACAAT
.........................................................................................................(((.(((....))).))).........((((......((...........((((.(((.......)))))))...........)).....))))...................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029126(GSM416755)
143B. (cell line)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
.........TTTAGCCTAAGCAGAAAAA.............................................................................................................................................................................................................................. 192.000.00-1.00-----------------------------------1.00----
...........................................................................................................................................................................................................TTTGGTCTGTTTGTGCAG............................. 182.000.00-----------1.00--1.00---------------------------
.............................................................................................................................................................................GATATTTTCCTTAATGCG........................................................... 181.000.00------------------------1.00-----------------
.........TTTAGCCTAAGCAGATTAA.............................................................................................................................................................................................................................. 191.000.00--------------------------1.00---------------
.......................................................................CTATTCTAAAGATGTTGGT................................................................................................................................................................ 191.000.00-----------------------1.00------------------
................................................................................................CTTTTCCAATTCAAACTCGT...................................................................................................................................... 201.000.00---------1.00--------------------------------
.................................................TATTTTCTGGGTGTTTTG....................................................................................................................................................................................... 181.000.00-----------1.00------------------------------
.....................................................................................................................................AGTTCTCCTGCTCAGCTG................................................................................................... 181.000.00------------------1.00-----------------------
......................................................................................................................................GTTCTCCTGCTCAGTCTA.................................................................................................. 181.000.00-----1.00------------------------------------
..................................................................................ATGTAACAACTTGACTTGTA.................................................................................................................................................... 201.000.00----------------------1.00-------------------
.........TTTAGCCTAAGCAGATTAAA............................................................................................................................................................................................................................. 201.000.00--------------------------------1.00---------