ID: uc002gby.1_intron_3_0_chr17_5338287_r.3p
GENE: C1QBP(2)
chr17:5338237-5338486-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(20)
CELL-LINE 		(2)
HEART 		(7)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
OTHER.ip 		(1)
RRP40.ip 		(16)
SKIN 		(1)
XRN.ip

Sense strand
GACCTGCTGAGTCACTCAGGATTGGATGTAGGCACCCAGCCTAGTTTGAAGTTCTGCATATAATTCAGCCAGCTAGGACAGAGACATTGTTTCAATACGCCTTTTTAACTGTAGCAGATTTCCATGTTTATGTGTTAACCTGCTCGGTTAAAACCATGCCTTGTCTGTTTTGCCTTGTCTGTTTTCCCTTGCCGTTTTAGAATCACGGTCACTTTCAACATTAACAACAGCATCCCACCAACATTTGATG
..................................................................................................((..(((((((((.(((((.((..(((......)))..)).))))))))))))))....))...........................................................................................
...............................................................................................96...............................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
....................................................................................................CTTTTTAACTGTAGCAGATTTCC...............................................................................................................................23125.0025.00-3.00-8.002.00-4.00---1.00-----------1.00-1.001.002.00---1.00------1.00------------------------------
....................................................................................................CTTTTTAACTGTAGCAGA....................................................................................................................................18115.0015.0015.00-------------------------------------------------------------------
......................................................................................................TTTTAACTGTAGCAGATTTCCA..............................................................................................................................22113.0013.00-6.00--1.00-2.00-----1.00---1.00------1.00----------------------1.00---------------------
.....................................................................................................TTTTTAACTGTAGCAGATTTCC...............................................................................................................................22111.0011.00-----4.00-----------------1.00-1.00--1.001.00--------------------1.00-----1.00--1.00--------
.....................................................................................................TTTTTAACTGTAGCAGATTTCCA..............................................................................................................................23111.0011.00----1.00---4.002.00--1.00----1.00----------------------------------1.001.00--------------
....................................................................................................CTTTTTAACTGTAGCAGATTTC................................................................................................................................2216.006.00---1.00---1.00--1.00-------------1.00-------------1.00--------1.00--------------------
..........................................................................................................................................................................................................TCACGGTCACTTTCAACATTAACAACAG....................2815.005.00--3.00-----------2.00-----------------------------------------------------
................................................................................................................................................................................................................TCACTTTCAACATTAACAACAG....................2224.004.00-----------2.00-1.50-------------0.50----------------------------------------
............................................................................................................................................................................................................ACGGTCACTTTCAACATTA...........................1913.003.00------------------2.00----------------------1.00--------------------------
......................................................................................................TTTTAACTGTAGCAGATTTCCAT.............................................................................................................................2313.003.00-------------------1.00-----------------------1.00-------1.00----------------
...........................................................................................................................................................................................................................ATTAACAACAGCATCCCACCAA.........2222.502.50-----2.50--------------------------------------------------------------
.....................................................................................................TTTTTAACTGTAGCAGATTTC................................................................................................................................2112.002.00----------1.00--------1.00------------------------------------------------
......................................................................................................TTTTAACTGTAGCAGATTTCCATG............................................................................................................................2412.002.00----------------------------------------1.00--------1.00------------------
....................................................................................................CTTTTTAACTGTAGCAGATTTCCA..............................................................................................................................2412.002.00----1.00-------1.00-------------------------------------------------------
....................................................................................................................................................................CTGTTTTGCCTTGTCTGTTTTCCCT.............................................................2512.002.00---------------2.00----------------------------------------------------
........................................................................................................................................................................................TCCCTTGCCGTTTTAGAA................................................1812.002.00---------------------2.00----------------------------------------------
.........................................................................................................................................................................TTGCCTTGTCTGTTTTGTGT.............................................................201.000.00--------------------------------1.00-----------------------------------
.........................................................................................................TAACTGTAGCAGATTTCCATGTT..........................................................................................................................2311.001.00--------------------------------------------1.00-----------------------
......................................................................................................TTTTAACTGTAGCAGATTTCC...............................................................................................................................2111.001.00----1.00---------------------------------------------------------------
..............................................................................................ATACGCCTTTTTAACTGTAGCAGATTTCCAT.............................................................................................................................3111.001.00-----------------1.00--------------------------------------------------
.......................................................................................................TTTAACTGTAGCAGATTTCCA..............................................................................................................................2111.001.00----1.00---------------------------------------------------------------
................................................................................................................................................................................................................TCACTTTCAACATTAATAA.......................191.000.00--1.00-----------------------------------------------------------------
.......................................................................................................................................................................................................................CAACATTAACAACAGCATCCCACCA..........2511.001.00---------1.00----------------------------------------------------------
.......................................................................................................................................TAACCTGCTCGGTTAAAACC...............................................................................................2011.001.00--1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................TCACGGTCACTTTCAACAT.............................1911.001.00--1.00-----------------------------------------------------------------
......................TGGATGTAGGCACCCAGCCTAGTTTGAAG.......................................................................................................................................................................................................2911.001.00------------------------------------------------1.00-------------------
........................................................................................................TTAACTGTAGCAGATTTC................................................................................................................................1811.001.00-------------------------------1.00------------------------------------
..........................................................................................................................................................................................................TCACGGTCACTTTCAACATTAACAACA.....................2711.001.00-------------1.00------------------------------------------------------
.......................................................................................................................................TAACCTGCTCGGTTAAAACCAT.............................................................................................2211.001.00------------------------------------------------------1.00-------------
....................................................................................................................................TGTTAACCTGCTCGGCTGG...................................................................................................191.000.00-------------------------------------------------------1.00------------
............CACTCAGGATTGGATGTAG...........................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------1.00-----
.....................TTGGATGTAGGCACCA.....................................................................................................................................................................................................................161.000.00---------------------------------1.00----------------------------------
.....................................................................................................TTTTTAACTGTAGCAGAT...................................................................................................................................1811.001.00------------------------------------1.00-------------------------------
......................................................................................................TTTTAACTGTAGCAGATTTCCATGT...........................................................................................................................2511.001.00-1.00------------------------------------------------------------------
......................................................................................................TTTTAACTGTAGCAGATTTC................................................................................................................................2011.001.00----------------1.00---------------------------------------------------
.................................................................................................................................................................................................................CACTTTCAACATTAAACGT......................191.000.00-----------------------------------1.00--------------------------------
............................................................................................................................................................................................................ACGGTCACTTTCAACATTAACAACAG....................2611.001.00--1.00-----------------------------------------------------------------
..................................................................................................................................................................................................TTTTAGAATCACGGTCAAC.....................................191.000.00----------------------------------1.00---------------------------------
.........................................................................................................................................................................................................ATCACGGTCACTTTCAACATTAACAACA.....................2811.001.00--1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................ATCACGGTCACTTTCAACATTAACAAC......................2711.001.00--1.00-----------------------------------------------------------------
.....................................................................................................TTTTTAACTGTAGCAGATTT.................................................................................................................................2011.001.00----------------------1.00---------------------------------------------
..............................................................ATTCAGCCAGCTAGGACAGAGACTG...................................................................................................................................................................251.000.00---------------------------------------------1.00----------------------
.......................................................................................................TTTAACTGTAGCAGATTTCCATG............................................................................................................................2311.001.00----1.00---------------------------------------------------------------
..........................................................................................................................................................................................................TCACGGTCACTTTCAA................................1611.001.00--1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................ATCACGGTCACTTTCAACATTAACAACAG....................2911.001.00---------------------------1.00----------------------------------------
.....................................................................................................................................................................................................................TTCAACATTAACAACAGCATCCCA.............2420.500.50---------------------------------------------------------------0.50----
.......................................................................................................................................................................................................................CAACATTAACAACAGCATCCC..............2120.500.50------------------------------------------------------------------0.50-
.................................................................................................................................................................................................................CACTTTCAACATTAACAACAG....................2120.500.50-----------------------------------------------------------------0.50--
............................................................................................................................................................................................................................TTAACAACAGCATCCCACCAACATTTG...2720.500.50----------------------------------------------------------------0.50---

Antisense strand
GACCTGCTGAGTCACTCAGGATTGGATGTAGGCACCCAGCCTAGTTTGAAGTTCTGCATATAATTCAGCCAGCTAGGACAGAGACATTGTTTCAATACGCCTTTTTAACTGTAGCAGATTTCCATGTTTATGTGTTAACCTGCTCGGTTAAAACCATGCCTTGTCTGTTTTGCCTTGTCTGTTTTCCCTTGCCGTTTTAGAATCACGGTCACTTTCAACATTAACAACAGCATCCCACCAACATTTGATG
..................................................................................................((..(((((((((.(((((.((..(((......)))..)).))))))))))))))....))...........................................................................................
...............................................................................................96...............................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................................GCTGTTGTTAATGTTGAAAGTGACCGTGATTCTAAAACGGCAAGGGAAAAC................... 5114.004.00-------4.00------------------------------------------------------------
....................................................................................................CTTTTTAACTGTAGCACTC................................................................................................................................... 192.000.00---------------------------------------------------------1.001.00---------
..................................................................................................................................................................................................GACCGTGATTCTAAAA........................................ 1612.002.00--------------------2.00-----------------------------------------------
..................................................................................................................GGTTAACACATAAACATGGAAATCTG.............................................................................................................. 2612.002.00---------------------------------------1.00--1.00-------------------------
.....................................................................................................CATGGAAATCTGCTACAGTTAAAAA............................................................................................................................ 2511.001.00------------------------------------------------------------1.00-------
.....................................................................................................................................................................................................................TTCAACATTAACAACGTG................... 181.000.00-------------------------------------------------------------1.00------
......................................................................................................................TTTCCATGTTTATGTATAT................................................................................................................. 191.000.00-----------1.00--------------------------------------------------------
..................................................TGAATTATATGCAGAAC....................................................................................................................................................................................... 1730.330.33-------------------------------------------------------------------0.33