ID: uc002gar.1_intron_1_0_chr17_5012348_r
GENE: ZNF232(2)
chr17:5012298-5012738-


(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(13)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(1)
HELA 		(5)
LIVER 		(3)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTGTGACTGTGCTGGAGGATTTAGAGAAAGGACTTGAACCAGAGCCGCAGGTGGGAAGGGGGATTTGGTCTGTTATGGGAGCCAGATTGATGACCTTCAGGCTGGACCGAGGGGCAGCTGTAGGGGGAGGTGCCAAGTTCAAACCTCTCTTGGGCCAGGTAGAGCAGTTAGTATGTGTTTCTGTGTCTGTCTTTTCTGCCCTCGAGCCCTGAATGAGAAAGAGACTCTAGCTCCTCTTCTTCCCTTGTGCTGACTCTGAGGAGGCTCTCTAAAGTCTCCTTGGAAGCTTTGGTCCAAGGAGGGTCACATCTGCAAGTGTCCAGGCAGGGGACAGAAACCACACTAGTAATTTGAAGAAAATTTAAACTGAGTGGTGCCTGATCACCTCCAGGTCCCAGGCCCTGCACATGGACCTGCACAGGAAGAGCCATGGGAGAAGAA
.........................................................................................................................................................................................................................................................................................................(((((..(((........)))..((((((.((........)).((((((((((((.....)))))...))).)))).))))))....)))))....................................................
...................................................................................................................................................................................................................................................................................................292................................................................................................391................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189784SRR189782SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577743(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACTAGT..............................................................................................23114.0014.00-3.008.001.001.00---------------------------1.00---------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACACTAGT..............................................................................................2617.007.00-3.00----2.00------------------------1.00----------------1.00-----
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACTAG...............................................................................................2216.006.00---2.003.00-------------------------------------1.00-----------
...................................................................................................................................................................................................................................................................................................................................GCAGGGGACAGAAACCACATTA................................................................................................225.000.00-----5.00------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................GGGGACAGAAACCACACT.................................................................................................1814.004.00-4.00----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACACTAG...............................................................................................2514.004.00--------------------1.00-----1.00-----------1.00------1.00--------
............TGGAGGATTTAGAGAAAGGACTTGAACC.................................................................................................................................................................................................................................................................................................................................................................................................................2813.003.003.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACACT.................................................................................................2313.003.00------1.00--------------1.00-------------------------1.00------
.TGTGACTGTGCTGGAGGATTTAGAGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................2813.003.003.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACAC..................................................................................................2213.003.00-----------------1.00-----------1.00--------------------1.00---
.TGTGACTGTGCTGGAGGATTTAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2613.003.002.00-----1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................AGGGGACAGAAACCACACTAGT..............................................................................................2212.002.00-------------2.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACACTAGA..............................................................................................2612.004.00------------2.00-----------------------------------------
...................TTTAGAGAAAGGACTTGAACCAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2612.002.002.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACA...................................................................................................2112.002.00---------1.00------1.00-------------------------------------
...................................................................................................GGCTGGACCGAGGGGAG.....................................................................................................................................................................................................................................................................................................................................172.000.00----------------------------------------1.00---1.00---------
...................................................................................................GGCTGGACCGAGGGGAGTG...................................................................................................................................................................................................................................................................................................................................192.000.00--------1.00--------------------------1.00------------------
...TGACTGTGCTGGAGGATTCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------1.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................GGCAGGGGACAGAAACCACACTAGT..............................................................................................2511.001.00-------------------------------------------------1.00----
................................CTTGAACCAGAGCCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------1.00----------------------------------
....GACTGTGCTGGAGGATTTAGAGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.001.00-----------------------------------------------------
...................................................................................................GGCTGGACCGAGGGGCGG....................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------1.00----------------------------
.........................................................GGGGGATTTGGTCTGTTTGTT...........................................................................................................................................................................................................................................................................................................................................................................211.000.00--------1.00---------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACCA................................................................................................211.000.00---1.00--------------------------------------------------
..........................AAAGGACTTGAACCAGAGCCGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------------------------------1.00-----------------------
.....................TAGAGAAAGGACTTGAACCAGAGCCGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................3011.001.001.00-----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACATTAG...............................................................................................221.000.00----1.00-------------------------------------------------
..................................................................................CAGATTGATGACCTTCAGAA...................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................TGACTCTGAGGAGGCTACT............................................................................................................................................................................191.000.00---------------------------------------1.00--------------
.........................................GAGCCGCAGGTGGGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------1.00----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GTGCCTGATCACCTCCTTT.................................................191.000.00---1.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCA.....................................................................................................1911.001.00---------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................CTGAGTGGTGCCTGATCACC.......................................................2011.001.00-------------------------------------1.00----------------
....................................AACCAGAGCCGCAGGTGGGAAGGGGGATC........................................................................................................................................................................................................................................................................................................................................................................................291.000.00-----------1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACACCAG...............................................................................................2511.003.00----------1.00-------------------------------------------
...............................ACTTGAACCAGAGCCGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------1.00--------------------------------------------
.........................................................GGGGGATTTGGTCTGTTGG.............................................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00---------------------------------------------
......................................................................................................................................................................................................................................................................................................................................GGGGACAGAAACCACAC..................................................................................................1711.001.00-1.00----------------------------------------------------
.TGTGACTGTGCTGGAGGATTTAGAGAAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00-----------------------1.00------------------------------
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACCAG...............................................................................................221.000.00----1.00-------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TGAGTGGTGCCTGATCACCTCCAGA.................................................251.000.00-------------------------------------------1.00----------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCACAA..................................................................................................2211.002.00----------------------------------1.00-------------------
....................................................................TCTGTTATGGGAGCCCCC...................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------1.00-------------------------
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACCAGA..............................................................................................231.000.00-----------------------------------------1.00------------
...TGACTGTGCTGGAGGATTTAGAGAAAGGACTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................3411.001.00-------1.00----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................AACTGAGTGGTGCCTGATCACCT......................................................2311.001.00------------------------------------1.00-----------------
.................................................................................................................................................................................................................................................................................................................................AGGCAGGGGACAGAAACCAAA...................................................................................................2111.001.00------------------1.00-----------------------------------
...................................................................................................................................................TCTTGGGCCAGGTAGAGCAGTTAGTA............................................................................................................................................................................................................................................................................2611.001.001.00-----------------------------------------------------
.TGTGACTGTGCTGGAGGATTTAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.001.00-----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CAGGGGACAGAAACCACACAAG...............................................................................................221.000.00---------------------------1.00--------------------------
....GACTGTGCTGGAGGATTTAGAGAAAGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-------1.00----------------------------------------------
...................................................................................AGATTGATGACCTTCAGGCTGGACCGAGG.........................................................................................................................................................................................................................................................................................................................................2911.001.00------------------------1.00-----------------------------
.....................................................................................................CTGGACCGAGGGGCAG....................................................................................................................................................................................................................................................................................................................................1621.001.00---------------------------------1.00--------------------
................................................................................................................................................................................................................................................................................................................................CAGGCAGGGGACAGAAACCACACTAGT..............................................................................................2711.001.00----------1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................CAGAAACCACACTAGT..............................................................................................1680.500.50-0.50----------------------------------------------------

Antisense strand
CTGTGACTGTGCTGGAGGATTTAGAGAAAGGACTTGAACCAGAGCCGCAGGTGGGAAGGGGGATTTGGTCTGTTATGGGAGCCAGATTGATGACCTTCAGGCTGGACCGAGGGGCAGCTGTAGGGGGAGGTGCCAAGTTCAAACCTCTCTTGGGCCAGGTAGAGCAGTTAGTATGTGTTTCTGTGTCTGTCTTTTCTGCCCTCGAGCCCTGAATGAGAAAGAGACTCTAGCTCCTCTTCTTCCCTTGTGCTGACTCTGAGGAGGCTCTCTAAAGTCTCCTTGGAAGCTTTGGTCCAAGGAGGGTCACATCTGCAAGTGTCCAGGCAGGGGACAGAAACCACACTAGTAATTTGAAGAAAATTTAAACTGAGTGGTGCCTGATCACCTCCAGGTCCCAGGCCCTGCACATGGACCTGCACAGGAAGAGCCATGGGAGAAGAA
.........................................................................................................................................................................................................................................................................................................(((((..(((........)))..((((((.((........)).((((((((((((.....)))))...))).)))).))))))....)))))....................................................
...................................................................................................................................................................................................................................................................................................292................................................................................................391................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189784SRR189782SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577743(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM339994(GSM339994)
hues6. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................................................................................................TCCTCTTCTTCCCTTTGAT............................................................................................................................................................................................... 191.000.00--------------1.00---------------------------------------
..................................................GTGGGAAGGGGGATTTACCA................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------------------------------1.00-------
.....................................................GGAAGGGGGATTTGGTTTAG................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00---1.00--------------------------------------------------
................................................................................................................................................................................AAAGACAGACACAGAAAC....................................................................................................................................................................................................................................................... 1860.330.33---------------------------------------------------0.33--
...................................CTGCGGCTCTGGTTC....................................................................................................................................................................................................................................................................................................................................................................................................... 1540.250.25----------------------------------------------------0.25-
.............................................................................................................................................................................................................................................................................................................................................................................CAGGCACCACTCAGT............................................................. 1580.120.12-----------------------------------------------------0.12