ID: uc002fya.3_intron_1_0_chr17_4443780_r.3p
GENE: (2)
chr17:4443730-4443979-


(1)
AGO1.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(7)
BRAIN 		(2)
BREAST 		(17)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(11)
SKIN 		(2)
XRN.ip

Sense strand
GGAGAACCAACACCTGGGGCGCGTGTTTCCTCCCTCGGTAAGAGACACGGATGACTTAACAGGCAGAAGGAGAGGCTGAGGCCCAGGAAGGGGCAGGGGTCACTGGTGAGGCAGCAACAGGGCAGAGGTGGGAAGACTGGGAGCCCGCGAGAGGCCCCGCCCTCTGTGGCCCCACAGCTCTGCCTTCCCACCCTCTGCAGAAGCTGACCTTGGACCTGACGGTGCTCCTGGGTGTGCTGCAGGGGCAACA
............................................................................................(((((((....(((..((((((.....((((...((.(((.....((((.(((.......)))))))))).))...)))).......))))))..))).)))))))....................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR189782SRR189787SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGA.................................................23112.0012.00-----1.00-1.00--2.00---1.00--1.00------1.00--1.00-----1.00-1.001.00----1.00-------------
...........................................................................................GGCAGGGGTCACTGGTT..............................................................................................................................................176.000.004.002.00-----------------------------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAG..................................................2216.006.00--1.00----------1.00-----------------1.00--1.00-----1.00---1.00----------
............................................................................................GCAGGGGTCACTGGTT..............................................................................................................................................165.000.001.001.00---------2.00---1.00---------------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGT.................................................2315.006.00--------------1.00---1.00---------1.00--------------1.00-1.00---------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTG.....................................................1913.003.00--3.00----------------------------------------------------
...........................................................................................GGCAGGGGTCACTGGTTCG............................................................................................................................................193.000.002.001.00-----------------------------------------------------
............................................................................................GCAGGGGTCACTGGTTC.............................................................................................................................................173.000.002.001.00-----------------------------------------------------
...........................................................................................GGCAGGGGTCACTGGTTC.............................................................................................................................................182.000.00-1.00------1.00----------------------------------------------
............................................................................................................................................................................................CACCCTCTGCAGAAGCTGACCTTG......................................2412.002.00---------------------------------------1.00--------1.00------
.........................................................................................................................GCAGAGGTGGGAAGACTGGGAGA..........................................................................................................232.000.00------2.00------------------------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGAA................................................2411.001.00-----1.00-------------------------------------------------
...........................................................................................................................................................................................................CTGACCTTGGACCTGACGGTG..........................2111.001.00-----------------------------------------------1.00-------
...............................................................................................................................GTGGGAAGACTGGGAGCCCGCGAGAGGCCCC............................................................................................3111.001.00--------------------------------------------------1.00----
......................................................................................................................................................................................................AGAAGCTGACCTTGGACCT.................................1911.001.00-------------------------------------------------1.00-----
................................................................AGAAGGAGAGGCTGAATG........................................................................................................................................................................181.000.00----------------1.00--------------------------------------
...........................................................................................GGCAGGGGTCACTGGTTCGA...........................................................................................................................................201.000.00-1.00-----------------------------------------------------
..............................................................................................................................................GCCCGCGAGAGGCCCGCCG.........................................................................................191.000.00-------1.00-----------------------------------------------
........................................................................................................................................................................................................AAGCTGACCTTGGACCTGACGGCGCT........................261.000.00-----------------------------1.00-------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTTCAG..................................................221.000.00--------1.00----------------------------------------------
...........................................................................................GGCAGGGGTCACTGGTTCTA...........................................................................................................................................201.000.00--1.00----------------------------------------------------
...........................................................CAGGCAGAAGGAGAGCGTG............................................................................................................................................................................191.000.00---------1.00---------------------------------------------
............................................ACACGGATGACTTAACAG............................................................................................................................................................................................1811.001.00----------------------1.00--------------------------------
...........................................................................................................................................................................CCACAGCTCTGCCTTCCTCCT..........................................................211.000.00----1.00--------------------------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGCAT...............................................2511.006.00---1.00---------------------------------------------------
.................................................................GAAGGAGAGGCTGAGACAT......................................................................................................................................................................191.000.00-----------------------1.00-------------------------------
................................................................AGAAGGAGAGGCTGAGGCATGT....................................................................................................................................................................221.000.00-------------------1.00-----------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGC.................................................2311.006.00------------1.00------------------------------------------
............................................................................................................................................................................................................TGACCTTGGACCTGACGGTGC.........................2111.001.00---------------------1.00---------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCA...................................................2111.001.00----------------------------------------------1.00--------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGTC................................................2411.006.00---1.00---------------------------------------------------
..........................................................................................................................CAGAGGTGGGAAGACTGGGAGA..........................................................................................................221.000.00-------------1.00-----------------------------------------
...............................................................CAGAAGGAGAGGCTGAATG........................................................................................................................................................................191.000.00------------------------------------------1.00------------
........................................................................................................................GGCAGAGGTGGGAAGACTGGGAA...........................................................................................................231.000.00-------------------------------------1.00-----------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAA..................................................2211.001.00--------------------------1.00----------------------------
...............................................................CAGAAGGAGAGGCTGAGGCTAAA....................................................................................................................................................................231.000.00--------------------1.00----------------------------------
.........................................................................................................................GCAGAGGTGGGAAGACTGTTGG...........................................................................................................221.000.00---------1.00---------------------------------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGTA................................................2411.006.00--------------------------------1.00----------------------
..................................................................................................................................................................................TCTGCCTTCCCACCCTCTGCAGCA................................................2411.006.00------------1.00------------------------------------------
.............................................CACGGATGACTTAACAG............................................................................................................................................................................................1711.001.00------------------------------1.00------------------------
..........................................................................................................TGAGGCAGCAACAGGGC...............................................................................................................................1720.500.50---0.50---------------------------------------------------
.......................................................................................................................................................AGGCCCCGCCCTCTGT...................................................................................1620.500.50---------------------------------------------------0.50---
..................................................................................................................................................................................................................TGGACCTGACGGTGC.........................1530.330.33----------------------------------------------------0.33--
...............................................................................................................................GTGGGAAGACTGGGAGC..........................................................................................................1730.330.33-----------------------------------------------------0.33-

Antisense strand
GGAGAACCAACACCTGGGGCGCGTGTTTCCTCCCTCGGTAAGAGACACGGATGACTTAACAGGCAGAAGGAGAGGCTGAGGCCCAGGAAGGGGCAGGGGTCACTGGTGAGGCAGCAACAGGGCAGAGGTGGGAAGACTGGGAGCCCGCGAGAGGCCCCGCCCTCTGTGGCCCCACAGCTCTGCCTTCCCACCCTCTGCAGAAGCTGACCTTGGACCTGACGGTGCTCCTGGGTGTGCTGCAGGGGCAACA
............................................................................................(((((((....(((..((((((.....((((...((.(((.....((((.(((.......)))))))))).))...)))).......))))))..))).)))))))....................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR189782SRR189787SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................CTGCAGAGGGTGGGAAGGCA.................................................. 2011.001.00--------------------------------------1.00----------------
...............................................................................................................................................................................................................................GCTCCTGGGTGTGCTGCAGGTT..... 221.000.00---1.00---------------------------------------------------
................................................................................................................................................................................AGAGGGTGGGAAGGCAGAGC...................................................... 2011.001.00----1.00--------------------------------------------------
...............................................................................................................CAGCAACAGGGCAGAGGT......................................................................................................................... 181.000.00-------------------------1.00-----------------------------
..............................................................CTCAGCCTCTCCTTCTGC.......................................................................................................................................................................... 1860.170.17------------------------------------------------------0.17