ID: uc002fum.3_intron_4_0_chr17_2266200_f
GENE: (5)
chr17:2266150-2266332+


(1)
AGO1.ip
(1)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(9)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(2)
FIBROBLAST
(4)
HEART
(4)
HELA
(2)
OTHER
(36)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GGCACTGCTGGCAGACCCTGTGTTCGGCCCGATCCTGGCCTCTCTTCTAGGTGAGCCTGAGAGCACAGGCACAGTGGGTACGGGGCAGGTGCTGAGGGAGCATCGTCTGGGCTGGCTGTCTCTGTCTCCACAGTGGGACCCTGTGCCTTGGAATACACTAAGCTCAAGACAGCCGATCACTAC
.........................................................................((((..(((((((((..(((.(((........))).)))...))))).))))..))))....................................................
....................................................................69..............................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189783SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................CTGGCTGTCTCTGTCTCCACAGT.................................................23118.0018.004.004.00-1.00---------1.00-------1.001.00--------1.00----1.00--1.00--1.00--1.00-1.00---------------------------------
................................................................................................................TGGCTGTCTCTGTCTCCACAGT.................................................22117.0017.007.00--1.00------2.002.002.00-2.00---1.00--------------------------------------------------------------
................................TCCTGGCCTCTCTTCTAG.....................................................................................................................................1855.405.40--0.20--0.20---------0.400.20-------------------------------0.800.60-0.200.200.200.20---0.200.200.200.200.200.200.200.200.200.200.20------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACAGAA................................................2414.001.004.00--------------------------------------------------------------------------------
................................................................................................................TGGCTGTCTCTGTCTCCACAGA.................................................2213.002.00--2.00-------------------------------------1.00----------------------------------------
.................................CCTGGCCTCTCTTCTAG.....................................................................................................................................1762.832.83-----------------0.170.17--------------------------------0.170.170.17--0.170.17-----------0.170.170.170.170.170.170.170.170.170.17--
............................................................................................................................................CTGTGCCTTGGAATACAC.........................1812.002.00----2.00----------------------------------------------------------------------------
............................................................................................TGAGGGAGCATCGTCACT.........................................................................182.000.00-------2.00-------------------------------------------------------------------------
.....................GTTCGGCCCGATCCTGGCCTCTCTTCTAG.....................................................................................................................................2912.002.00------2.00--------------------------------------------------------------------------
................................................................................................................TGGCTGTCTCTGTCTCCACAG..................................................2112.002.00-----1.00--------------1.00------------------------------------------------------------
..................................CTGGCCTCTCTTCTAG.....................................................................................................................................1671.571.57--0.14---0.14------------0.14------------------------------0.43---0.14-0.140.14---------------------0.140.14
................................................................................................................TGGCTGTCTCTGTCTCCACAGTT................................................2311.0017.00---------------------------1.00-----------------------------------------------------
.................CTGTGTTCGGCCCGATCCT...................................................................................................................................................1911.001.00-------------------------------------------1.00-------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCCCAG..................................................221.000.00---------1.00-----------------------------------------------------------------------
..................................................................................................AGCATCGTCTGGGCTGGC...................................................................1811.001.00-----------------------------1.00---------------------------------------------------
..................TGTGTTCGGCCCGATCCTGGCCTCTCTTCTAG.....................................................................................................................................3211.001.00----------------------------------------------1.00----------------------------------
.......CTGGCAGACCCTGTGTTCGGC...........................................................................................................................................................2111.001.00---------------------------------1.00-----------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACAGA.................................................2311.001.00---------1.00-----------------------------------------------------------------------
..........................................................................................................CTGGGCTGGCTGTCTGAA...........................................................181.000.00-----------------------------------1.00---------------------------------------------
................................................................................................................TGGCTGTCTCTGTCTCCACAGTA................................................2311.0017.00--------------------------------------1.00------------------------------------------
.......................................................................................................................................GGACCCTGTGCCTTGGAATACACTA.......................2511.001.00--------------------------1.00------------------------------------------------------
...................................................................................................GCATCGTCTGGGCTGGCTGTCT..............................................................2211.001.00-----------------1.00---------------------------------------------------------------
.........................................................................GTGGGTACGGGGCAGGTGCTGGGGA.....................................................................................251.000.00-------------------1.00-------------------------------------------------------------
..............................................................................................................GCTGGCTGTCTCTGTCTCCACAGA.................................................241.000.00----------------1.00----------------------------------------------------------------
....................TGTTCGGCCCGATCCTGGCCTCTCTTCTAG.....................................................................................................................................3011.001.00------------------------------1.00--------------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCAC....................................................2011.001.00--------1.00------------------------------------------------------------------------
..............................................................................................AGGGAGCATCGTCTGGGCTGGCCGCC...............................................................261.000.00-------------------------------------1.00-------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACAGC.................................................2311.001.00-------------1.00-------------------------------------------------------------------
................................................................................................................TGGCTGTCTCTGTCTCCCCCG..................................................211.000.00-----1.00---------------------------------------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACAG..................................................2211.001.00---------------1.00-----------------------------------------------------------------
...............................ATCCTGGCCTCTCTTCTAG.....................................................................................................................................1911.001.00--------------------------------------------1.00------------------------------------
.................CTGTGTTCGGCCCGATCCTGGCCTCTCTTCTAG.....................................................................................................................................3311.001.00----------------------------1.00----------------------------------------------------
.............................................................................................GAGGGAGCATCGTCTGG.........................................................................1711.001.00--------1.00------------------------------------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACA...................................................2111.001.00-----------------------1.00---------------------------------------------------------
...................................................................................................................................................TTGGAATACACTAAGCTCAAGACAGCC.........2711.001.00-----------------------------------------1.00---------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCACAGTTT...............................................2511.0018.00--------------------------------1.00------------------------------------------------
...................................TGGCCTCTCTTCTAGGTG..................................................................................................................................1811.001.00------------------------1.00--------------------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCA.....................................................1930.670.67---0.330.33----------------------------------------------------------------------------
...............................................................................................................CTGGCTGTCTCTGTCTCCAAAA..................................................2230.330.67-------------------------------------------------------0.33-------------------------

Antisense strand
GGCACTGCTGGCAGACCCTGTGTTCGGCCCGATCCTGGCCTCTCTTCTAGGTGAGCCTGAGAGCACAGGCACAGTGGGTACGGGGCAGGTGCTGAGGGAGCATCGTCTGGGCTGGCTGTCTCTGTCTCCACAGTGGGACCCTGTGCCTTGGAATACACTAAGCTCAAGACAGCCGATCACTAC
.........................................................................((((..(((((((((..(((.(((........))).)))...))))).))))..))))....................................................
....................................................................69..............................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189783SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................TACACTAAGCTCAAGGGG............ 181.000.00----------------------------------1.00----------------------------------------------
..............................................................................................................CACTGTGGAGACAGAGACAGCCAGC................................................ 2511.001.00-------------------------1.00-------------------------------------------------------
.....................................ACCTAGAAGAGAGGC................................................................................................................................... 1580.120.12----------------0.12----------------------------------------------------------------