ID: uc002fqr.2_intron_0_0_chr16_90168851_f.3p
GENE: AX747598(1)
chr16:90172367-90172616+


(1)
AGO1.ip
(2)
AGO2.ip
(2)
B-CELL
(3)
BRAIN
(2)
BREAST
(25)
CELL-LINE
(2)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES

Sense strand
GTTCCATAAGTTCATGGCCTGCGGTCATCAGGGAAAATAAAACACTGACTGGGGGTCAGTCTTTTCTGTTTAGAGGAGGCTCCCTGAAACCTCCCCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCGTCCCGAGTAGCTGGAACTATAGGCGCCCGCCACCACTCCCGGCTAATTTTTTTTTTTTTTTTTTTTTGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG
........................................................................................................................................(((((((.......(((....))).......)))))))............................................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCCCG...................................................2817.000.001.003.00-7.00--6.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCTAG..................................................2914.000.007.002.00---4.001.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCCCG....................................................2711.000.001.001.00-5.00--4.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCAAG..................................................299.000.003.004.00-1.00--1.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCTAG...................................................288.000.002.006.00----------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCCAG..................................................296.000.003.001.00-1.00--1.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCCAG...................................................286.000.002.003.00----1.00-----------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCAA...................................................286.000.001.00--1.00--4.00-----------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTCTTG.......................................................295.000.00-4.00---1.00------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTCTTG.....................................................314.000.002.00-1.00--1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCTTT...................................................284.000.001.002.00---1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCCCC..................................................294.000.00---4.00--------------------------------------------
.................................................................................................................................................................................................TTTGTAGAGACGGGGTTTATC....................................214.000.00------------4.00-----------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCAAG...................................................284.000.001.001.00-1.00--1.00-----------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTCG.......................................................293.000.002.00----1.00------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTCTTG....................................................323.000.001.001.00---1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCTTG....................................................273.000.00-3.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTCTTG......................................................303.000.001.002.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTCG..........................................................262.000.001.00----1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCCCC...................................................282.000.00---2.00--------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCCAT...................................................282.000.002.00-----------------------------------------------
..........................................................................................................................................................................GCTAATTTTTTTTTTTTTTTTTCTGG......................................................262.000.00----1.00-1.00-----------------------------------------
..............................................................................................................................................................CCACCACTCCCGGCTAATTTTTTTTTTCTTG.............................................................312.000.001.001.00----------------------------------------------
..................................................................................................................................CCCGAGTAGCTGGAACTATAGG..................................................................................................2202.002.00--------2.00---------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTCTAG....................................................322.000.001.001.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTCTAG...................................................332.000.001.00-----1.00-----------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTAT......................................................302.000.00-1.00----1.00-----------------------------------------
.................................................................................................................................................................................................TTTGTAGAGACGGGGTTTCACCGTGTTGCTT..........................312.000.00--2.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTCCCC......................................................252.000.00---2.00--------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTCG.....................................................312.000.001.00--1.00--------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTCTT........................................................282.000.00--1.00--1.00------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTTCCG...................................................331.000.001.00-----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTTTCAG..................................................341.000.00-1.00----------------------------------------------
.................................................TGGGGGTCAGTCTTTTTTCG.....................................................................................................................................................................................201.000.00---------------1.00--------------------------------
................................................................................................................................................................................................................TTTCACCGTGTTAGCCAGGATGGGGGT...............271.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTAAAG...................................................331.000.00---1.00--------------------------------------------
.............................................................................................................................................................................................TTTTTTTGTAGAGACGGGCGTC.......................................221.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCAAT....................................................271.000.001.00-----------------------------------------------
...................................................................................................................................................ATAGGCGCCCGCCACCACTCCCGAC..............................................................................251.000.00----1.00-------------------------------------------
................................................................................................CTCCCGGGTTCAAGCGATTCTCCTGCCTCGGC..........................................................................................................................321.000.00-----------1.00------------------------------------
............................................................................................................................................................CGCCACCACTCCCGGCCT............................................................................181.000.00-----1.00------------------------------------------
..............................................................................................................................................................CCACCACTCCCGGCTAATTTTTTTTTTTCTTG............................................................321.000.00-----1.00------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTTTC................................................281.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCCAT..................................................291.000.00---1.00--------------------------------------------
..............................................................................................................................................................................................TTTTTTGTAGAGACGGGGTTTCAGG...................................251.000.00----1.00-------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCCCC....................................................271.000.00---1.00--------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTAGG................................................281.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTCTAG......................................................301.000.001.00-----------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTTGGG................................................291.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCTCT....................................................271.000.00---1.00--------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGCCGG.................................................281.000.00----1.00-------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTTTGG................................................291.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTCTCG.......................................................291.000.00-----1.00------------------------------------------
..................................................................................................................TCTCCTGCCTCAGCGTCCCGAGTAGCCGGG..........................................................................................................301.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTTCGG...................................................331.000.00------1.00-----------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTTGAC................................................291.000.00----1.00-------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTCG.................................................271.000.00----1.00-------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTCC.................................................271.000.00----1.00-------------------------------------------
................................................................................TCCCTGAAACCTCCCCCA........................................................................................................................................................181.000.00---------------------------------1.00--------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCTAC...................................................281.000.001.00-----------------------------------------------
..........................................................................................................................................................................................TTTTTTTTTTGTAGAGACGGGGGGC.......................................251.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCATC...................................................281.000.00------1.00-----------------------------------------
....................................................................................................CGGGTTCAAGCGATTCTCCTGA................................................................................................................................221.000.00-----------------1.00------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGCGTG.................................................281.000.001.00-----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTAACG......................................................301.000.00-----1.00------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTGTAGAGACGGGCG.........................................261.000.00--1.00---------------------------------------------
.........................................................................................CCTCCCCCTCCCGGGGCGG..............................................................................................................................................191.000.00-----------------------------------1.00------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTGGA................................................281.000.001.00-----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTCTTA..........................................................261.000.00-1.00----------------------------------------------
............................................................................................................................................................CGCCACCACTCCCGGCTCGC..........................................................................201.000.00--------------------------------------1.00---------
.......................................................................................................................................................................CCGGCTAATTTTTTTTTTTTTTTTTTCCAG.....................................................301.000.001.00-----------------------------------------------
............................................................................................................................................................................................TTTTTTTTGTAGAGACGGGCCT........................................221.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTCTTC...........................................................251.000.00-----1.00------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTGGCT................................................291.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTATG..........................................................261.000.00---1.00--------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTCTC.......................................................291.000.00-----1.00------------------------------------------
...................................................................................................................................................................................................TGTAGAGACGGGGTTTCAGCGC.................................221.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCTTA....................................................271.000.00-1.00----------------------------------------------
...........................................................................................................AAGCGATTCTCCTGCCTCAGCGTCCCGTG..................................................................................................................291.000.00--1.00---------------------------------------------
.............................................................................................................................................................................................TTTTTTTGTAGAGACGGGGTTTCCGCC..................................271.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTATTT....................................................321.000.00-1.00----------------------------------------------
................................................................................................................................................................................................................................AGGATGGTCTCGATCTCCTTATA...231.000.00----------------1.00-------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTATTG......................................................301.000.00-----1.00------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTTTCC................................................291.000.00----1.00-------------------------------------------
..................................................................................................................................CCCGAGTAGCTGGAACTATAGGC.................................................................................................2301.001.00-----------------------------------------1.00------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTGTCG..........................................................261.000.00------1.00-----------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTCCAA...................................................331.000.00-1.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTCTAG.......................................................291.000.00-1.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTCCG...........................................................251.000.001.00-----------------------------------------------
......................................................................................................................................................................................TTTTTTTTTTTTTTGTAGAGACGGTCTC........................................281.000.00----1.00-------------------------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTTGTAGAGACGGAGCC........................................311.000.00--1.00---------------------------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGTAGAGACGGGCGTC.......................................301.000.00--1.00---------------------------------------------
........................................................................................................................................................................................................AGACGGGGTTTCACCGTGTAACC...........................231.000.00----1.00-------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCTC.....................................................261.000.00-----1.00------------------------------------------
....................................................................................................................................................................................................GTAGAGACGGGGTTTCAGCA..................................201.000.00---------1.00--------------------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGTAGAGGGTC............................................251.000.00----1.00-------------------------------------------
....................................................................................................................................................................CTCCCGGCTAATTTTTTTTTTTTCTTG...........................................................271.000.00-1.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTCTAG..........................................................261.000.00-----1.00------------------------------------------
............................................................................................................................................................................TAATTTTTTTTTTTTTTTTTTTTTGCACT.................................................291.000.00--1.00---------------------------------------------
......................................................................................................................................................................................................AGAGACGGGGTTTCACCGGGTC..............................221.000.00----1.00-------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCAGG...................................................281.000.001.00-----------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCCTG....................................................271.000.00-1.00----------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTAACG.......................................................291.000.00-----1.00------------------------------------------
...............................................................................................................................................................................................TTTTTGTAGAGACGGGGTAATT.....................................221.000.00-------------------------------------------1.00----
............................................................................................................AGCGATTCTCCTGCCTCAGCGTCCCCAT..................................................................................................................281.000.00----1.00-------------------------------------------
............................................................................................................................................................................TAATTTTTTTTTTTTTTTTTTTTTGGGC..................................................281.000.00----1.00-------------------------------------------
...................................................................................................CCGGGTTCAAGCGATTCTCCTGGT...............................................................................................................................241.000.00--------------1.00---------------------------------
............................................................................................................................................................................TAATTTTTTTTTTTTTTTTTTTTTGTATTCG...............................................311.000.00---1.00--------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTCCAT....................................................321.000.00-----1.00------------------------------------------
..........................................................................................................................................................................................................................TTAGCCAGGATGGTCTCGACCCT.........231.000.00----1.00-------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTTGG................................................281.000.00--1.00---------------------------------------------
..............................................................................................................................................................CCACCACTCCCGGCTAGTCT........................................................................201.000.00-----1.00------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTCTC............................................................241.000.00-----1.00------------------------------------------
..................................................................................................................................................................................................TTGTAGAGACGGGGTTTCACCGTGTTAGCG..........................301.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTTTCTT..................................................341.000.00---1.00--------------------------------------------
............................................................................................................................................................................TAATTTTTTTTTTTTTTTTTCGGC......................................................241.000.00----1.00-------------------------------------------
.............................................................................................................................................................................................TTTTTTTGTAGAGACGGGGTTTCCGC...................................261.000.00---------------------1.00--------------------------
..........................................................................................................................................................CCCGCCACCACTCCCGGCTAATTTTTTTTCT.................................................................311.000.00-----1.00------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTGGC................................................281.000.00----1.00-------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTAGTCC...............................................291.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTCATG........................................................281.000.00-----1.00------------------------------------------
.........................................................................................................TCAAGCGATTCTCCTGCCTCAGCGAGG......................................................................................................................271.000.00--1.00---------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTCTGG......................................................251.000.001.00-----------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCAGG..................................................291.000.00---1.00--------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTGTTTAG................................................311.000.00---1.00--------------------------------------------
.................................................................................................................................................................................................TTTGTAGAGACGGGGTTATG.....................................201.000.00--1.00---------------------------------------------
.............................................................................................................................................................................AATTTTTTTTTTTTTTTTTTTTTGTGGGG................................................291.000.00-----1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTGTTTTA................................................311.000.00-----1.00------------------------------------------
..........................................................................................................................................GCTGGAACTATAGGCTCTG.............................................................................................191.000.00--------------1.00---------------------------------
....................................................................................................................................CGAGTAGCTGGAACTCTG....................................................................................................181.000.00-----------------------------1.00------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTCCC.....................................................261.000.00-1.00----------------------------------------------
.............................................................................................................................................................................................TTTTTTTGTAGAGACGGGGTTTGGCA...................................261.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTCTTT.......................................................291.000.00----1.00-------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTGTT....................................................321.000.00---1.00--------------------------------------------
.............................................................................................................................................................................................TTTTTTTGTAGAGACGGGGTTTCACCTC.................................281.000.00----1.00-------------------------------------------
..............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTGTTGG.................................................271.000.00-----1.00------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTGTAGAGACGGGGCCCC......................................251.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTCCGT................................................................201.000.00-----1.00------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTCTTG...................................................331.000.001.00-----------------------------------------------
...........................................................................................................................................................................................TTTTTTTTTGTAGAGACGGGGGCCT......................................251.000.00--1.00---------------------------------------------
............................................................................................CCCCCTCCCGGGTTCAAGCGAATC......................................................................................................................................241.000.00--------------1.00---------------------------------
............................................................................................................AGCGATTCTCCTGCCTCAGCGAAC......................................................................................................................241.000.00----------------1.00-------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTTAAA...................................................331.000.001.00-----------------------------------------------
........................................................................................................................................................................................TTTTTTTTTTTTGTAGAGACGGGGTTTCTTGG..................................321.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTTTTAC.....................................................311.000.00-----1.00------------------------------------------
....................................................................................................................TCCTGCCTCAGCGTCCCGAC..................................................................................................................201.000.00----------------------------------------------1.00-
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTGGGGG.................................................301.000.00----1.00-------------------------------------------
..................................................................................................................................CCCGAGTAGCTGGAACTATAGGCGC...............................................................................................2501.001.00-----------1.00------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTCTCT.........................................................271.000.00-----1.00------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCAC...................................................281.000.00---1.00--------------------------------------------
...............................................................................................................................................................................................TTTTTGTAGAGACGGGGTTCGCT....................................231.000.00--1.00---------------------------------------------
............................................................................................................................................................................................TTTTTTTTGTAGAGACGGCGCT........................................221.000.00-------------------------1.00----------------------
........................................................................................................................................................................................TTTTTTTTTTTTGTAGAGACGGGGTTTCATCGT.................................331.000.00---------------------------1.00--------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTTCCAA..................................................291.000.00------1.00-----------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTCTC.........................................................271.000.00-----1.00------------------------------------------
........................................................................................................................................TAGCTGGAACTATAGGCGTATG............................................................................................221.000.00----------1.00-------------------------------------
...............................................................................................................................................................................................TTTTTGTAGAGACGGGGTTTAAA....................................231.000.00-------------------------------------1.00----------
.......................................................................................................................................................................CCGGCTAATTTTTTTTTTTTTTTTTTTCCCC....................................................311.000.00--1.00---------------------------------------------
......................................................................................................................................................................CCCGGCTAATTTTTTTTTTTTTTTTTATAG......................................................301.000.00---1.00--------------------------------------------
...........................................................................................................................................................................CTAATTTTTTTTTTTTTTTTTTTTCTCG...................................................281.000.00---1.00--------------------------------------------
............................................................................AGGCTCCCTGAAACCTCCC...........................................................................................................................................................1930.330.33-----------------------------------------------0.33
...................................................................................................................................................ATAGGCGCCCGCCACCACTCCCGGCT.............................................................................2680.120.12----0.12-------------------------------------------
...................................................................................................................................................ATAGGCGCCCGCCACCACTCCCGGC..............................................................................2580.120.12----0.12-------------------------------------------
...................................................................................................................................................ATAGGCGCCCGCCACCACTCCCGGCC.............................................................................2680.120.12----0.12-------------------------------------------
....................................................................................................................................................TAGGCGCCCGCCACCACTCCCGGC..............................................................................2480.120.12----0.12-------------------------------------------

Antisense strand
GTTCCATAAGTTCATGGCCTGCGGTCATCAGGGAAAATAAAACACTGACTGGGGGTCAGTCTTTTCTGTTTAGAGGAGGCTCCCTGAAACCTCCCCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCGTCCCGAGTAGCTGGAACTATAGGCGCCCGCCACCACTCCCGGCTAATTTTTTTTTTTTTTTTTTTTTGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG
........................................................................................................................................(((((((.......(((....))).......)))))))............................................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
..................................................................................................CCCGGGTTCAAGCGATTCTCCTGTAAT............................................................................................................................. 276.000.00-------6.00----------------------------------------
...................................................................................................CCGGGTTCAAGCGATTCTCCTGTAAT............................................................................................................................. 264.000.00-------4.00----------------------------------------
...............................................................................................................GATTCTCCTGCCTCAGCGTCCCGAGTACAT............................................................................................................. 302.000.00----2.00-------------------------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGATCTCCTA...... 312.000.00--------1.001.00--------------------------------------
...................................................................................................CCGGGTTCAAGCGATTCTCCTGTC............................................................................................................................... 242.000.00-------------------2.00----------------------------
...................................................................................................................CTCCTGCCTCAGCGTCCCGTAT................................................................................................................. 221.000.00--------------------------1.00---------------------
..........................................................................................................................................................CCCGCCACCACTCCCGGCTGCCC......................................................................... 231.000.00--1.00---------------------------------------------
..........................................................................................CTCCCCCTCCCGGGTTCACA............................................................................................................................................ 201.000.00----------------------------------------1.00-------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGAGACC. 241.000.00--1.00---------------------------------------------
.................................................................................................................................TCCCGAGTAGCTGGAATAG...................................................................................................... 191.000.00----------1.00-------------------------------------
......................................................................................................................................................................................................................CGTGTTAGCCAGGATGGTCTCGAC............ 241.000.00-------------1.00----------------------------------
.........................................................................................................................................................................................TTTTTTTTTTTGTAGAGACGGGGTTTTTAG................................... 301.000.00-1.00----------------------------------------------
..................................................................................................................................................................................................TTGTAGAGACGGGGTTTCTATA.................................. 221.000.00---------------------------------------------1.00--
............................................................................................................................................................................................................................AGCCAGGATGGTCTCGATCTCCTCTG.... 261.000.00--------------------1.00---------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGAGCG.......... 271.000.00--1.00---------------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGACCTGGT 261.000.00----1.00-------------------------------------------
..................................................................................................................TACTCGGGACGCTGAGGCAGGAGA................................................................................................................ 2401.001.00-------------1.00----------------------------------
........................................................................................................................................................CGCCCGCCACCACTCCCGGCTTCTG......................................................................... 251.000.00----1.00-------------------------------------------
.............................................................................................................................AGCGTCCCGAGTAGCTGGCGGG....................................................................................................... 221.000.00----------------------------1.00-------------------
.................................................................................................................GGGACGCTGAGGCAGGAGAA..................................................................................................................... 2001.001.00---------1.00--------------------------------------
...........................................................................................................................................................................................................................TAGCCAGGATGGTCTCGATCTCCTC...... 251.000.00-----------------1.00------------------------------
......................................................................................................................................................GGCGCCCGCCACCACTCCCGGCTCG........................................................................... 251.000.00----1.00-------------------------------------------
...........................................................................................................................................................................................................CGGGGTTTCACCGTGTTAGCCAGGATGCCC................. 301.000.00----1.00-------------------------------------------
.........................................................................................CCTCCCCCTCCCGGGTCTCC............................................................................................................................................. 201.000.00--1.00---------------------------------------------
..........................................................................................CTCCCCCTCCCGGGTTCT.............................................................................................................................................. 181.000.00----------------------1.00-------------------------
...............................................................................................................................................................................................................................CAGGATGGTCTCGATCTCCCCTA.... 231.000.00------------------------------------------1.00-----
...........................................................................................................................................................GCCGGGAGTGGTGGCGG.............................................................................. 1701.001.00---------1.00--------------------------------------
................................................................................................................ATTCTCCTGCCTCAGCGTCCCGATGCC............................................................................................................... 271.000.00--1.00---------------------------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGATGCG......... 281.000.00--1.00---------------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGGTG... 221.000.00--1.00---------------------------------------------
..................................................................................................CCCGGGTTCAAGCGATTCTCCTTAA............................................................................................................................... 251.000.00--------------------------------------------1.00---
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCGCC...... 191.000.00-------------------------------1.00----------------
...................................................................................................CCGGGTTCAAGCGATTCTCCTT................................................................................................................................. 221.000.00--------1.00---------------------------------------
...............................................................................................................GATTCTCCTGCCTCAGCGTCCCGAGTAGCTAA........................................................................................................... 321.000.00------------------------1.00-----------------------
............................................................................................TTGAACCCGGGAGGGGG............................................................................................................................................. 1701.001.00--------1.00---------------------------------------
.................................................................................................................TTCTCCTGCCTCAGCGTCCACAT.................................................................................................................. 231.000.00----------------1.00-------------------------------
........................................................................................ACCTCCCCCTCCCGGGTCTC.............................................................................................................................................. 201.000.00--1.00---------------------------------------------
.................................................................................................................TTCTCCTGCCTCAGCGTCCCGAGTCCGC............................................................................................................. 281.000.00----1.00-------------------------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGAGGGG.................. 191.000.00---------------------------------------1.00--------
.........................................................................................CCTCCCCCTCCCGGGTTCAA............................................................................................................................................. 201.000.00------------------------------1.00-----------------
.....................................................................................................................................................................TCCCGGCTAATTTTTTTTTAAAA.............................................................. 231.000.00--------------------------------1.00---------------
........................................................................................ACCTCCCCCTCCCGGGTTCAAGCGATGCGG.................................................................................................................................... 301.000.00----1.00-------------------------------------------
...............................................................................................................................................................................................................................CAGGATGGTCTCGATCTCCTGC..... 221.000.00----------------------------------1.00-------------
...............................................................................................................................................................................................................................CAGGATGGTCTCGATCTCCCC...... 211.000.00--1.00---------------------------------------------
....................................................................................................CGGGTTCAAGCGATTCTCCTGTTT.............................................................................................................................. 241.000.00---------------1.00--------------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGATCTCCTC...... 311.000.00---------1.00--------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGACCTGGCA 271.000.00----1.00-------------------------------------------
........................................................................................................................GCCTCAGCGTCCCGAGTAGTAG............................................................................................................ 221.000.00--1.00---------------------------------------------
..............................................................................................................................................................CCACCACTCCCGGCTAATTTGATA.................................................................... 241.000.00-----------------------1.00------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGATCTCCC....... 301.000.00-----------1.00------------------------------------
..........TTCATGGCCTGCGGTCTC.............................................................................................................................................................................................................................. 181.000.00----------1.00-------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGACCTGC 251.000.00--1.00---------------------------------------------
.........................................................................................TGAACCCGGGAGGGGGAGG.............................................................................................................................................. 1901.001.00-------------1.00----------------------------------
....................................................................................................................TCCTGCCTCAGCGTCCCGAAG................................................................................................................. 211.000.00--1.00---------------------------------------------
.................................................................................................................TTCTCCTGCCTCAGCGTCCCGACCGC............................................................................................................... 261.000.00--1.00---------------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGACCTCGGGCA 291.000.00----1.00-------------------------------------------
.........................................................................................................................TACTCGGGACGCTGAGG................................................................................................................ 1701.001.00-----------1.00------------------------------------
............................................CTGACTGGGGGTCAGTCTTTGCCT...................................................................................................................................................................................... 241.000.00----1.00-------------------------------------------
.....................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTCGAGCGA......... 281.000.00--1.00---------------------------------------------
.....................................................................................................................................................AGGCGCCCGCCACCACTCCCGGCTC............................................................................ 251.000.00----1.00-------------------------------------------
...................................................................................................................CTCCTGCCTCAGCGTCCCGAGTGAAG............................................................................................................. 261.000.00--1.00---------------------------------------------
...................................................................................................................CTCCTGCCTCAGCGTCCCGACTG................................................................................................................ 231.000.00--1.00---------------------------------------------
....................................................................................................CGGGTTCAAGCGATTCTCCTGCCTCATTT......................................................................................................................... 291.000.00------------------1.00-----------------------------
...........................................................................................................AAGCGATTCTCCTGCCTCAGCGTTT...................................................................................................................... 251.000.00---------------1.00--------------------------------
.....................................................................................................................CCTGCCTCAGCGTCCCGAGTGGG.............................................................................................................. 231.000.00--1.00---------------------------------------------
.......................................TAAACAGAAAAGACTGACCCCCAGTCAGTGTTT.................................................................................................................................................................................. 3311.001.00------------------1.00-----------------------------
............................................................................................................................................................................................................................AGCCAGGATGGTCTCGATCTCCTCTTT... 271.000.00------------------------------------1.00-----------
.........................CATCAGGGAAAATAAACTTA............................................................................................................................................................................................................. 201.000.00----------1.00-------------------------------------
.................................................................................................................................................................................................................................GGATGGTCTCGATCTCCTGACCTGAC 261.000.00--1.00---------------------------------------------