ID: uc002fol.1_intron_7_0_chr16_89778378_r
GENE: C16orf7(6)
chr16:89778328-89778504-


(1)
AGO2.ip 		(12)
BRAIN 		(4)
BREAST 		(9)
CELL-LINE 		(4)
CERVIX 		(2)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
XRN.ip

Sense strand
CAGAGAAAGATGGAGGAGCGCCGGCTGCGGCTCCAGGAGGCCGCCAACAGGTGGGACTCCTGCCCGCCCCTGGGGCCGCTGCGGGGAGGGCCTGGCCCCGGCACCCACCGCGTGCCTTTCTCCCCAGGAGGTTTTGCAGCCAAGTCGCCCTGACCCCGGAGGAACGGGAGCAGCGGG
.............................................................((.(((...((((((((..((.(((....))).))..)))).))))..))).))..............................................................
..........................................................59......................................................115............................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
...............................................................CCGCCCCTGGGGCCGCGG................................................................................................18238.000.5027.00----2.00---1.00--1.00-------1.00----1.00-1.00----1.00------1.00----1.001.00----------
................................................................CGCCCCTGGGGCCGCGG................................................................................................1729.000.50------2.001.00-1.00-----1.00-----1.00-----------1.00-1.00----1.00---------------
................................................................CGCCCCTGGGGCCGCGGTT..............................................................................................1923.000.50-------1.00----1.00--1.00----------------------------------------
...............................................................CCGCCCCTGGGGCCGCGGT...............................................................................................1922.000.50-------1.00----------------------------------------1.00-------
........................................................................GGGCCGCTGCGGGGAGC........................................................................................172.000.001.00-----------------------------------1.00-------------------
........................................................................GGGCCGCTGCGGGGA..........................................................................................1541.001.000.75----0.25--------------------------------------------------
.......................................................................................................................................................GACCCCGGAGGAACGGGAG.......1911.001.00-------------1.00------------------------------------------
..........................................................CCTGCCCGCCCCTGGCAGC....................................................................................................191.000.00-------------------------------1.00------------------------
................................................................CGCCCCTGGGGCCGCGGT...............................................................................................1821.000.50----------------------------------1.00---------------------
............................................................................................................................................................CGGAGGAACGGGAGCAGCGG.2011.001.00-------------------------------------------1.00------------
..............................................................CCCGCCCCTGGGGCCGGGG................................................................................................191.000.00---------------------------------------------------1.00----
........................................................................GGGCCGCTGCGGGGAGCA.......................................................................................181.000.00-------------1.00------------------------------------------
...........................................................................................................................................................CCGGAGGAACGGGAGCAGCG..2011.001.00--1.00-----------------------------------------------------
.......................................................................GGGGCCGCTGCGGGGAGGCT......................................................................................201.000.00--------------------------------------------------1.00-----
................................................................CGCCCCTGGGGCCGCG.................................................................................................1621.000.501.00-------------------------------------------------------
..........................................................................................................................................................CCCGGAGGAACGGGAGCAGCGG.2211.001.00-----------------------1.00--------------------------------
.......................................................................GGGGCCGCTGCGGGGCTCA.......................................................................................191.000.00------------------------------1.00-------------------------
..........TGGAGGAGCGCCGGCT.......................................................................................................................................................1611.001.00-----------------------------------------1.00--------------
..............................................................................................GCCCCGGCACCCACCTT..................................................................171.000.00----------------------1.00---------------------------------
...........................................................................................................................................................CCGGAGGAACGGGAGCAGCGT.2111.001.00----------------------------------------------------1.00---
...............................................................CCGCCCCTGGGGCCGCCG................................................................................................1821.000.501.00-------------------------------------------------------
.AGAGAAAGATGGAGGAGCGC............................................................................................................................................................2011.001.00---------1.00----------------------------------------------
...............................................................................................CCCCGGCACCCACCGCGCC...............................................................191.000.00------1.00-------------------------------------------------
.AGAGAAAGATGGAGGCACC.............................................................................................................................................................191.000.00-------------------------------------1.00------------------
...............................................................CCGCCCCTGGGGCCGC..................................................................................................1620.500.50------------------------------------------------------0.50-
................................................................CGCCCCTGGGGCCGC..................................................................................................1520.500.50-----------------------------------------------------0.50--
.........ATGGAGGAGCGCCGG.........................................................................................................................................................1530.330.33-------------------------------------------------------0.33
...............................................................CCGCCCCTGGGGCCG...................................................................................................1540.250.250.25-------------------------------------------------------
...............................................................CCGCCCCTGGGGCCGAGG................................................................................................1840.250.250.25-------------------------------------------------------

Antisense strand
CAGAGAAAGATGGAGGAGCGCCGGCTGCGGCTCCAGGAGGCCGCCAACAGGTGGGACTCCTGCCCGCCCCTGGGGCCGCTGCGGGGAGGGCCTGGCCCCGGCACCCACCGCGTGCCTTTCTCCCCAGGAGGTTTTGCAGCCAAGTCGCCCTGACCCCGGAGGAACGGGAGCAGCGGG
.............................................................((.(((...((((((((..((.(((....))).))..)))).))))..))).))..............................................................
..........................................................59......................................................115............................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM532880(GSM532880)
G659T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
........................................................................................................CCACCGCGTGCCTTTATGC...................................................... 198.000.00-2.001.00-1.00------------1.001.00-------1.00-------------------1.00---------
...................................................................................................GGCACCCACCGCGTGCCTTA.......................................................... 204.000.00-1.00------------1.00-1.00------------------------------1.00--------
...................................................................................................................................................CCGTTCCTCCGGGGTCAGGG.......... 2013.003.00---3.00----------------------------------------------------
....................................................................................................AAAGGCACGCGGTGGGTGC.......................................................... 1912.002.00-1.00----------------1.00-------------------------------------
........................................................................................................CCACCGCGTGCCTTTATG....................................................... 182.000.00-----------2.00--------------------------------------------
....................................................................................................GCACCCACCGCGTGCCTTTAA........................................................ 211.000.00-1.00------------------------------------------------------
.............................................AACAGGTGGGACTCCTTTT................................................................................................................. 191.000.00-----------------------------1.00--------------------------
.....................................................................................................CACCCACCGCGTGCCTTTCAA....................................................... 211.000.00--1.00-----------------------------------------------------
....................................................................................................GCACCCACCGCGTGCCTTAA......................................................... 201.000.00----1.00---------------------------------------------------
........................................................................................................CCACCGCGTGCCTTTAAGT...................................................... 191.000.00--1.00-----------------------------------------------------
..................................................................................................AAGGCACGCGGTGGGTGCCG........................................................... 2011.001.00----------1.00---------------------------------------------
...................................................................................................GGCACCCACCGCGTGCCTTAA......................................................... 211.000.00--------1.00-----------------------------------------------
.....................................................................................................CACCCACCGCGTGCCTTTTC........................................................ 201.000.00-1.00------------------------------------------------------
........................................................................................................CCACCGCGTGCCTTTTTG....................................................... 181.000.00-----------1.00--------------------------------------------
......................................................CCCCAGGGGCGGGCAGGAGTC...................................................................................................... 2111.001.00------------------------1.00-------------------------------
...................................................................................................GGCACCCACCGCGTGCCTTTAA........................................................ 221.000.00--------1.00-----------------------------------------------
.....................................................................................................CACCCACCGCGTGCCTTTGA........................................................ 201.000.00-1.00------------------------------------------------------
........................................................................................................CCACCGCGTGCCTTTACAG...................................................... 191.000.00-----------------1.00--------------------------------------
........................................................................................................CCACCGCGTGCCTTTTGGC...................................................... 191.000.00----------1.00---------------------------------------------
.................................................................................................................TGGCTGCAAAACCTCCTGGGGAGAAAGGC................................... 2911.001.00-------------------------------------------------1.00------
.........................................................................................................................TGGCTGCAAAACCTCCTGGGG................................... 2111.001.00---1.00----------------------------------------------------
...................................................................................................GGCACCCACCGCGTGCCTTTTA........................................................ 221.000.00-1.00------------------------------------------------------
........................................................................................................................................................ACCCCGGAGGAACGGGG........ 171.000.00----------------------------1.00---------------------------
...............................................................................................CCCCGGCACCCACCGTGG................................................................ 181.000.00------------------------------------------1.00-------------
.....................................................................................................CACCCACCGCGTGCCTTTTCT....................................................... 211.000.00----1.00---------------------------------------------------
........................................................................................................CCACCGCGTGCCTTTCAT....................................................... 181.000.00--------------1.00-----------------------------------------
.....................................................................................................CACCCACCGCGTGCCTTTTATA...................................................... 221.000.00----------------1.00---------------------------------------
...........................................................................................................CCTCCTGGGGAGAAAGGCACGCGG.............................................. 2411.001.00-------------------1.00------------------------------------
........................................................................................................CCACCGCGTGCCTTTCA........................................................ 171.000.00--------1.00-----------------------------------------------
....................................................................................................GCACCCACCGCGTGCCTTTAATA...................................................... 231.000.00----1.00---------------------------------------------------
.......................................................................................................CCCACCGCGTGCCTTTGGC....................................................... 191.000.00--1.00-----------------------------------------------------
...........................................................CAGCGGCCCCAGGGGCGGGCAG................................................................................................ 2211.001.00--------------------------------------1.00-----------------
........................................................................................................CCACCGCGTGCCTTTCTTC...................................................... 191.000.00--1.00-----------------------------------------------------
.....................................................................................................CACCCACCGCGTGCCTTTTTAA...................................................... 221.000.00----------1.00---------------------------------------------
.................................................................................GGGTGCCGGGGCCAGGCCCTCCCCG....................................................................... 2511.001.001.00-------------------------------------------------------
...........................................................GCGGCCCCAGGGGCGGGCAG.................................................................................................. 2011.001.00-----1.00--------------------------------------------------
........................................................................................................CCACCGCGTGCCTTTATGT...................................................... 191.000.00-1.00------------------------------------------------------