ID: uc002fmk.1_intron_0_0_chr16_88943684_r.3p
GENE: (2)
chr16:88943634-88943883-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(2)
LIVER 		(3)
OTHER 		(10)
SKIN 		(3)
UTERUS

Sense strand
CACGGTAGTGGGATGCCGTCCCGCAAAATGGCCCAGTGAGTGGCTGTATCTGGAGCATGGCCCGAGGGCTGTGGGGCTTTGGAGTTTCTCTCTTCTCACCTGGTGATGACGTGGCTGGGTCTGAATGGCTTGGTTGAGGCGTGTGTTGGGGATTCGGGTGGCCAGACCCAGCCCTGACTGGCCCCTCTGCCCCCACCCAGAGCTGCTGGAACTGCGGGCGGAAAGCCAGTGAGACGTGCAGCGGCTGCAA
.............................................................................................................................................((.((.((((....(((.((((((...((....)).)))))))))...)))).)).))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
..................................................................................................CCTGGTGATGACGTGGCTGGGTCTGAAT............................................................................................................................28120.0020.007.00-4.00-1.003.00---1.00-------1.00----1.00-------------1.00------1.00---------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAGA....................................................................................23111.0011.00-4.00-1.00-1.00----------1.00---------------------1.00-1.00----1.00----------1.00--
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAG.....................................................................................2217.007.003.00-1.00---1.00------------------1.00-----------------------------1.00---
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAGAA...................................................................................2415.0011.00---1.00----3.00------------------------------1.00-------------------
................................................................................................................................................GTTGGGGATTCGGGTGGCCAGA....................................................................................2215.005.00----1.00-----1.00-1.00-------------------1.00-------------------------1.00
.................................................................................................ACCTGGTGATGACGTGGCTGGGTCTGAAT............................................................................................................................2915.005.002.00-----------------2.00--1.00-------------------------------------
...............................................................................................................................................TGTTGGGGATTCGGGTGG.........................................................................................1813.003.00-2.00--1.00------------------------------------------------------
.................................................................................................................................................TTGGGGATTCGGGTGGCCAGA....................................................................................2113.003.00---2.00----------------1.00--------------------------------------
............................................................................................................................................................................................................GCTGGAACTGCGGGCGGAAA..........................2013.003.00-------2.00---1.00-----------------------------------------------
..............................................................................................................................................GTGTTGGGGATTCGGGTGGCCAGT....................................................................................2412.001.00----1.00----------------1.00-------------------------------------
......................................................................................................................................................................................................AGAGCTGCTGGAACTGCGGGCGG.............................2312.002.00-----------2.00-----------------------------------------------
..............................................................................................................................................GTGTTGGGGATTCGGGTGGCCAGA....................................................................................2412.002.00-------------2.00---------------------------------------------
.............................................................................................................................................TGTGTTGGGGATTCGGGTGGCCAGA....................................................................................2512.002.00--------------------1.00---1.00----------------------------------
.................................................................................................................................................TTGGGGATTCGGGTGGCCAGAC...................................................................................2212.002.00----------2.00------------------------------------------------
.................................................................................................................................................TTGGGGATTCGGGTGGCCAG.....................................................................................2012.002.00---------------2.00-------------------------------------------
.............................................................................................................................................TGTGTTGGGGATTCGG.............................................................................................1612.002.001.001.00---------------------------------------------------------
.............................................................................................................................................TGTGTTGGGGATTCGGGTGGCCAG.....................................................................................2412.002.00-2.00---------------------------------------------------------
.......................................................................................................................................................ATTCGGGTGGCCAGAC...................................................................................1621.501.50------------1.50----------------------------------------------
..................................................................................................................................................................................TGGCCCCTCTGCCCCCACCCAGT.................................................231.000.00----------------------------1.00------------------------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAGAAT..................................................................................2511.0011.00---------1.00-------------------------------------------------
..................................................................................................CCTGGTGATGACGTGGCTGGGTCTTAAT............................................................................................................................281.000.00-------------------------------1.00---------------------------
........................................................................................................................................................................................................................GGCGGAAAGCCAGTGAGACGTG............2211.001.00-----------------------------------1.00-----------------------
..................................................................................................................................................................................TGGCCCCTCTGCCCCCACCCA...................................................2111.001.00-----------------------------------------------------1.00-----
...........................................................................................................................................CGTGTGTTGGGGATTCGGGTGGCCAT.....................................................................................261.000.00---------------------------------------------------1.00-------
......................................................................................................................................................................................................AGAGCTGCTGGAACTGCGGGCGGAAAGC........................2811.001.00------1.00----------------------------------------------------
.......................................................................................................................................................................................................GAGCTGCTGGAACTGCGGGGGT.............................221.000.00-----------------------------------------------1.00-----------
.............................................................................................................................................TGTGTTGGGGATTCGGGTGG.........................................................................................2011.001.001.00----------------------------------------------------------
........................................................................................................................................................................................................AGCTGCTGGAACTGCGGGCGCA............................221.000.00----------------------------------1.00------------------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAT.....................................................................................2211.001.00---------1.00-------------------------------------------------
..................................................................................................CCTGGTGATGACGTGGCTGGGTCTGCAT............................................................................................................................281.000.00------------------------------------------------------1.00----
...............................................................................................................................................TGTTGGGGATTCGGGTGGC........................................................................................1911.001.001.00----------------------------------------------------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCATT....................................................................................2311.001.00---1.00-------------------------------------------------------
...............................................................GAGGGCTGTGGGGCTTGAGG.......................................................................................................................................................................201.000.00-----------------------------------------1.00-----------------
.............................................................................................................................................TGTGTTGGGGATTCGGGTGGC........................................................................................2111.001.00-------1.00---------------------------------------------------
................................................................................................................................................GTTGGGGATTCGGGTGGCCAG.....................................................................................2111.001.00--------------------------------------------------1.00--------
.....................................................................TGTGGGGCTTTGGAGTTTCTCTG..............................................................................................................................................................231.000.00----------------------------------------------1.00------------
............................................................................................................................................GTGTGTTGGGGATTCGGGTGGAA.......................................................................................231.000.00-------------------1.00---------------------------------------
.............................................................................................................................................TGTGTTGGGGATTCGGGTA..........................................................................................191.000.00---------------------------------------------------------1.00-
..................................................................................................................................................................................TGGCCCCTCTGCCCCCAC......................................................1811.001.001.00----------------------------------------------------------
...........................................................................................................................................CGTGTGTTGGGGATTCGGGTGGCCATT....................................................................................271.000.001.00----------------------------------------------------------
......................................................................................................................................................................................................AGAGCTGCTGGAACTATCC.................................191.000.00------------------------------1.00----------------------------
.............................................................................................................................................TGTGTTGGGGATTCGGGTGGCCAT.....................................................................................241.000.00--------------1.00--------------------------------------------
...................................GTGAGTGGCTGTATCTCTG....................................................................................................................................................................................................191.000.00-----------------------------1.00-----------------------------
............................................................................................................................................GTGTGTTGGGGATTCGGGTGGCA.......................................................................................231.000.00--------------1.00--------------------------------------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCA......................................................................................2111.001.00---------------------------------1.00-------------------------
.......................................................................................................................TCTGAATGGCTTGGTTTT.................................................................................................................181.000.00--------------------------------------------1.00--------------
.......................................................................................................................................................................................................GAGCTGCTGGAACTGCGGGCGGAAAGCC.......................2811.001.00-------------------------------------------------1.00---------
.....................................................................TGTGGGGCTTTGGAGTTCCTG................................................................................................................................................................211.000.00----------------------------------------------------1.00------
..............................................................................................................................................GTGTTGGGGATTCGGGTGGCCAG.....................................................................................2311.001.00-----------------1.00-----------------------------------------
........................................................................................................................................................................................................AGCTGCTGGAACTGCGGGC...............................1911.001.00------------------------------------------1.00----------------
...............................................................................................................................................TGTTGGGGATTCGGGTGGCCAGT....................................................................................2311.007.00--1.00--------------------------------------------------------
........................................................................................................................................................................................................AGCTGCTGGAACTGCGGGCGGAA...........................2311.001.00-------------------1.00---------------------------------------
................................................................................................................................................GTTGGGGATTCGGGTGGCCAGAAAA.................................................................................2511.005.00---------------------------1.00-------------------------------

Antisense strand
CACGGTAGTGGGATGCCGTCCCGCAAAATGGCCCAGTGAGTGGCTGTATCTGGAGCATGGCCCGAGGGCTGTGGGGCTTTGGAGTTTCTCTCTTCTCACCTGGTGATGACGTGGCTGGGTCTGAATGGCTTGGTTGAGGCGTGTGTTGGGGATTCGGGTGGCCAGACCCAGCCCTGACTGGCCCCTCTGCCCCCACCCAGAGCTGCTGGAACTGCGGGCGGAAAGCCAGTGAGACGTGCAGCGGCTGCAA
.............................................................................................................................................((.((.((((....(((.((((((...((....)).)))))))))...)))).)).))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
.................................................................................................................................................TTGGGGATTCGGGTGAGCA...................................................................................... 191.000.00----------------1.00------------------------------------------
...............................................................................................................................................................GGCCAGACCCAGCCCGGC......................................................................... 181.000.00-1.00---------------------------------------------------------
.................................................................................................................................................................................................CACCCAGAGCTGCTGTTTG...................................... 191.000.00-------------------------------------1.00---------------------
....................................................................CTGTGGGGCTTTGGATCCT................................................................................................................................................................... 191.000.00------------------------------------------------1.00----------
................................................................................................................................................................GCCAGACCCAGCCCTGGCC....................................................................... 191.000.00-1.00---------------------------------------------------------
................................................................................................................................................................GCCAGACCCAGCCCTGGGG....................................................................... 191.000.00------1.00----------------------------------------------------
................................................................................................................................................................GCCAGACCCAGCCCTGGGC....................................................................... 191.000.00-1.00---------------------------------------------------------
.................................................................................................................................................TTGGGGATTCGGGTGAGCC...................................................................................... 191.000.00--------------------------1.00--------------------------------
................................................................AGGGCTGTGGGGCTTTGTCC...................................................................................................................................................................... 201.000.00-----------------------1.00-----------------------------------
................................................................................................................................................................GCCAGACCCAGCCCTGC......................................................................... 171.000.00-1.00---------------------------------------------------------
..........................................................................................................................................................GGGTCTGGCCACCCG................................................................................. 1530.330.33------0.33----------------------------------------------------