ID: uc002fky.2_intron_8_0_chr16_88688797_f.3p
GENE: (9)
chr16:88689427-88689676+


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(5)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(4)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(2)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
AGGAGGGATGGCACTGAAGAGTGTCTGGGGGAGGCTGTATGCGTCTGTGCGCGCGTCTGCAGCTGTGCGCGCGTGCGCAGCTGTGCGCTTGTGTGTAGCTGTGCGTCTGTGGGTGTGTAGCTGTGCATGTGTGCGTCAGGGCGTGTGGGGCAGGGAGGGCCCTTCTCACTTCTCGCCACGCTCCGTCCCGCCCGCCCCAGGTCGTCTTCGCGGTCATCGTCCTACTCTGGCTCCGGCTCCTCCCGGTCGC
..........................................................................................................................................(((((.(((((((.(((..(((..............)))...))).))))))).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGT............................................................................................2314.004.001.00---------1.00------------1.00----------------1.00----------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAGG............................................................................................2214.004.003.00--1.00-----------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAG.............................................................................................2214.004.001.001.00-----1.00---1.00---------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAGA...........................................................................................2414.002.00--4.00------------------------------------------------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAGGATC.........................................................................................2514.004.00----4.00----------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGG............................................................................................2313.003.00----------------------1.00-------------1.00-----1.00--------
.......................................................................................................................................TCAGGGCGTGTGGGGCAAAG...............................................................................................203.000.00------3.00--------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAT............................................................................................2313.002.00-3.00-------------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGGTTAT........................................................................................2713.003.003.00--------------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAA.............................................................................................2212.002.00-------------1.00------------------------1.00------------
................................................................................................................................................................................CACGCTCCGTCCCGCCCGCCCCAGT.................................................252.000.002.00--------------------------------------------------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAG.............................................................................................2112.002.00-----2.00---------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGA..............................................................................................2112.002.00--------1.00----------1.00-------------------------------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAGGCT..........................................................................................2411.004.00-------------------------------------1.00-------------
....GGGATGGCACTGAAGAAA....................................................................................................................................................................................................................................181.000.00------------1.00--------------------------------------
.................................................................................................................................................................................................................................TCTGGCTCCGGCTCCCCCT......191.000.00---------------1.00-----------------------------------
............................................................................................................................................................................................................TCTTCGCGGTCATCGTCCTACTCTGG....................2611.001.00--------------1.00------------------------------------
...................................................................................................................................................................................GCTCCGTCCCGCCCGCCCCAGT.................................................221.000.00-------------------------------1.00-------------------
................................................................................................................................GTGTGCGTCAGGGCGGC.........................................................................................................171.000.00-------------------------------------------1.00-------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAAAA..........................................................................................2511.002.00-----------1.00---------------------------------------
....................................................................................................................................................................................CTCCGTCCCGCCCGCCCCAGA.................................................211.000.00-----------------1.00---------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGCT.............................................................................................221.000.00----------1.00----------------------------------------
..........................................................................................................................GTGCATGTGTGCGTCAGGGCG...........................................................................................................2111.001.00---------------------------1.00-----------------------
...................................................................................................................................................................................GCTCCGTCCCGCCCGCCCCA...................................................2011.001.00------------------1.00--------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGGT...........................................................................................2411.003.00---1.00-----------------------------------------------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAGGGC..........................................................................................2411.001.00-------1.00-------------------------------------------
........................................................................................................................................................................................................GTCGTCTTCGCGGTCATCGTC.............................2111.001.00------------------------1.00--------------------------
......................................................................................................................................GTCAGGGCGTGTGGGGTCTG................................................................................................201.000.00---------------------1.00-----------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAA............................................................................................2311.002.00---1.00-----------------------------------------------
......................................................................................................................................................................................CCGTCCCGCCCGCCCCC...................................................171.000.00---------------------------------1.00-----------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGGTTTT........................................................................................2711.003.00-1.00-------------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGGGAA.........................................................................................261.000.00----------------------------1.00----------------------
..................................................................................................................................................................................................................CGGTCATCGTCCTACTCTGGCT..................2211.001.00----------------------------------1.00----------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGAT...........................................................................................2411.004.00--------1.00------------------------------------------
...................................................................................................................................................................................................................GGTCATCGTCCTACTCTGGCTCCGGCT............2711.001.00--------------------------------1.00------------------
.................................................................................................................................................................................................................................TCTGGCTCCGGCTCCTCTCTG....211.000.00--------------------------1.00------------------------
....................................................................................................................................................................................................CCAGGTCGTCTTCGC.......................................1511.001.00---1.00-----------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAG............................................................................................2311.002.00----------------1.00----------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAGA............................................................................................2311.004.00-------------------------1.00-------------------------
........................................................................................................................................CAGGGCGTGTGGGGCAGGGAGAAT..........................................................................................2411.002.001.00--------------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGGGAAAA...........................................................................................2411.002.00-----------------------------------1.00---------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAGA................................................................................................191.000.00-----1.00---------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGGCAAAGA..............................................................................................211.000.00-------1.00-------------------------------------------
.......................................................................................................................................TCAGGGCGTGTGGGG....................................................................................................1540.250.25--------0.25------------------------------------------

Antisense strand
AGGAGGGATGGCACTGAAGAGTGTCTGGGGGAGGCTGTATGCGTCTGTGCGCGCGTCTGCAGCTGTGCGCGCGTGCGCAGCTGTGCGCTTGTGTGTAGCTGTGCGTCTGTGGGTGTGTAGCTGTGCATGTGTGCGTCAGGGCGTGTGGGGCAGGGAGGGCCCTTCTCACTTCTCGCCACGCTCCGTCCCGCCCGCCCCAGGTCGTCTTCGCGGTCATCGTCCTACTCTGGCTCCGGCTCCTCCCGGTCGC
..........................................................................................................................................(((((.(((((((.(((..(((..............)))...))).))))))).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)
.....................................................................................................................................................................................TCCGTCCCGCCCGCCCCAG.................................................. 192.000.00---------2.00-----------------------------------------
.....................................................................................................................................................................................................................................GCTCCGGCTCCTCCCGGG... 182.000.00---------------------------------------1.00----1.00------
.................................................................................................................................................................................ACGCTCCGTCCCGCCAAA....................................................... 181.000.00---------------------------------------------1.00-----
........................CTGGGGGAGGCTGTATGC................................................................................................................................................................................................................ 181.000.00------------------------------1.00--------------------
......................................................................................................................................................................................CCGTCCCGCCCGCCCCGCC................................................. 191.000.00-----------------------------------------1.00---------
.....................................................................................................................................................................................TCCGTCCCGCCCGCCCTTT.................................................. 191.000.00------------1.00--------------------------------------
....................................................................................................................................................................................................................................GGCTCCGGCTCCTCCCGC.... 181.000.00-----------------------------1.00---------------------
......................................................................................................................................................................................CCGTCCCGCCCGCCCTAG.................................................. 181.000.00-----1.00---------------------------------------------
.....................................................................................................................................................................................................................TCATCGTCCTACTCTTAGG.................. 191.000.00--------------------1.00------------------------------
....................................................................................................................................................................................GGGGCGGGCGGGACGGAG.................................................... 1820.500.50----------------------------------------------0.50----
....................................................................................................................................................................................GGGCGGGCGGGACGGAG..................................................... 1740.500.50-----------------------------------------------0.250.25--
....................................................................................................................................................................................CTCCGTCCCGCCCGCCCGCAC................................................. 210.250.00-------------------------------------------------0.25-
..................................................................................................................................................AGGGCCCTCCCTGCCCC....................................................................................... 1780.120.12--------------------------------------------------0.12