ID: uc002fkm.2_intron_5_0_chr16_87873432_r.5p
GENE: (4)
chr16:87873835-87874084-


(1)
AGO2.ip 		(2)
B-CELL 		(2)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(6)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(2)
XRN.ip

Sense strand
TTTAGGAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAGGTACGTGCAAGAATGGATGGAGCCGTCTTTTTTCATTATTTTAATGTGAGGCAGGAAGCAGCCACATTCCACTCGAAGCCTGTTGGTCGGCTCAGGCCAGTTCACAGTCGGGCCGTGATTGGGGCCTCTGGGGCCAGCAGGATGTGGGGCGGGTGGCTTCTGGCCGTGTGTCCTTGAGCACGGTTTCTCCAGAGAACGGG
....................................................(((.((..((.((((((..((..((((.((((((.........)))))).))))....))..))).))).))...)).)))(((((......))))).....................................................................................................
..................................................51....................................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTACGTGCAAGAATGGATGG....................................................................................................................................................................................20114.0014.008.00-6.00------------------------------
.........................................................................................................................................................................TGGGGCCTCTGGGGCCAGCAGGATGTGGGGCGGGTGGCTTCTGGCCGTGTGTCCTTGAGCACGGTTT..............67111.0011.00---11.00-----------------------------
..................................................GTACGTGCAAGAATGGA.......................................................................................................................................................................................17110.0010.003.007.00-------------------------------
................................AATGATCAACCCCTACA.........................................................................................................................................................................................................1719.009.00-9.00-------------------------------
..................................................GTACGTGCAAGAATGGATG.....................................................................................................................................................................................1917.007.007.00--------------------------------
..........ACTTGAATTTCGTCACAGAGG...........................................................................................................................................................................................................................2117.007.002.00-5.00------------------------------
..................................................GTACGTGCAAGAATGGAA......................................................................................................................................................................................1815.0010.00-5.00-------------------------------
...........CTTGAATTTCGTCACAG..............................................................................................................................................................................................................................1714.004.00-4.00-------------------------------
......AATTACTTGAATTTCGTCACAGAG............................................................................................................................................................................................................................2414.004.00--3.00-----1.00------------------------
.............TGAATTTCGTCACAGAGG...........................................................................................................................................................................................................................1813.003.00-1.002.00------------------------------
..................................................GTACGTGCAAGAATGGAT......................................................................................................................................................................................1813.003.003.00--------------------------------
.........................CAGAGGAAATGATCAACCCC.............................................................................................................................................................................................................2013.003.00------2.00---------------1.00----------
.....................GTCACAGAGGAAATGATC...................................................................................................................................................................................................................1813.003.003.00--------------------------------
.........TACTTGAATTTCGTCACAGAG............................................................................................................................................................................................................................2112.002.00--2.00------------------------------
................................AATGATCAACCCCTACAGA.......................................................................................................................................................................................................1912.001.00-------------------1.00--------1.00----
....................................................................................................................................TTGGTCGGCTCAGGCCA.....................................................................................................1712.002.00-2.00-------------------------------
..................................................GTACGTGCAAGAATGGATA.....................................................................................................................................................................................1912.003.002.00--------------------------------
.............TGAATTTCGTCACAGAGGAA.........................................................................................................................................................................................................................2012.002.001.00--------------------------1.00-----
..................................................GTACGTGCAAGAATGGATGGA...................................................................................................................................................................................2112.002.002.00--------------------------------
.......ATTACTTGAATTTCGTCACAGAGG...........................................................................................................................................................................................................................2412.002.002.00--------------------------------
..........ACTTGAATTTCGTCACAGAGGA..........................................................................................................................................................................................................................2212.002.00-------2.00-------------------------
..................................................GTACGTGCAAGAATGAAG......................................................................................................................................................................................182.000.002.00--------------------------------
...........CTTGAATTTCGTCACAGAGGA..........................................................................................................................................................................................................................2112.002.00--2.00------------------------------
.................................................................................................................................CTGTTGGTCGGCTCAGGCCAGTTCAC...............................................................................................2612.002.00----2.00----------------------------
.............TGAATTTCGTCACAGAGGAAA........................................................................................................................................................................................................................2112.002.002.00--------------------------------
............TTGAATTTCGTCACAGAGGA..........................................................................................................................................................................................................................2012.002.001.00-----------------1.00--------------
.....................GTCACAGAGGAAATGATCAACCCC.............................................................................................................................................................................................................2412.002.002.00--------------------------------
.............TGAATTTCGTCACAGAG............................................................................................................................................................................................................................1712.002.00--------1.00-1.00----------------------
.................................ATGATCAACCCCTACAG........................................................................................................................................................................................................1712.002.00----2.00----------------------------
.........................................................................................................................................CGGCTCAGGCCAGTTCACAGTCGGGC.......................................................................................2612.002.00-----2.00---------------------------
.......................................................................................................................................................................ATTGGGGCCTCTGGGGCCAGCAGGATG........................................................2711.001.00------1.00--------------------------
........TTACTTGAATTTCGTCACAGAGGAAATGA.....................................................................................................................................................................................................................2911.001.001.00--------------------------------
.............................................................................................................................................................TCGGGCCGTGATTGGGGCCTCTGGGGCCAGCAGGATGTGGGGCGGGTGGA...........................................501.000.00---1.00-----------------------------
....................................ATCAACCCCTACAGGTACG...................................................................................................................................................................................................1911.001.00-----1.00---------------------------
..................................................GTACGTGCAAGAATGAA.......................................................................................................................................................................................171.000.001.00--------------------------------
..........ACTTGAATTTCGTCACAGAGGAAATG......................................................................................................................................................................................................................2611.001.00---------------1.00-----------------
..............................................ACAGGTACGTGCAAGAATGGATGGAGCCGTC.............................................................................................................................................................................3111.001.00------------------------------1.00--
..................................................GTACGTGCAAGAATGGAAA.....................................................................................................................................................................................1911.0010.001.00--------------------------------
..................................................GTACGTGCAAGAATGGAAC.....................................................................................................................................................................................1911.0010.001.00--------------------------------
.............TGAATTTCGTCACAGAGGAAATGATCA..................................................................................................................................................................................................................2711.001.00-----------------1.00---------------
................................AATGATCAACCCCTACAG........................................................................................................................................................................................................1811.001.00----1.00----------------------------
..............................................................................................................................................................CGGGCCGTGATTGGGGCCTCTGGGGCCAGCAGGATG........................................................3611.001.00------1.00--------------------------
................ATTTCGTCACAGAGGA..........................................................................................................................................................................................................................1611.001.00-----------1.00---------------------
.................................................................................................................................................................................................GTGGGGCGGGTGGCTTCA.......................................181.000.00--------------1.00------------------
.......ATTACTTGAATTTCGTCACA...............................................................................................................................................................................................................................2011.001.00------1.00--------------------------
................ATTTCGTCACAGAGGAAT........................................................................................................................................................................................................................181.000.00----------------1.00----------------
....................................................................................................................................................AGTTCACAGTCGGGCCGTGA..................................................................................2011.001.00--1.00------------------------------
..................................................GTACGTGCAAGAATGGATGGAG..................................................................................................................................................................................2211.001.001.00--------------------------------
.........TACTTGAATTTCGTCACAGAGGAA.........................................................................................................................................................................................................................2411.001.001.00--------------------------------
..................................................................................................................................................................CCGTGATTGGGGCCTCTGGGGCCA................................................................2411.001.00---------------------1.00-----------
...............................................................................................GTGAGGCAGGAAGCAACCA........................................................................................................................................191.000.00---------1.00-----------------------
..........ACTTGAATTTCGTCACAGAGGAAA........................................................................................................................................................................................................................2411.001.00-----------------------1.00---------
................................................................................................................................................................GGCCGTGATTGGGGCCTCTGGGGCCAGC..............................................................2811.001.00----1.00----------------------------
...........CTTGAATTTCGTCACAGA.............................................................................................................................................................................................................................1811.001.00-------1.00-------------------------
........TTACTTGAATTTCGTCA.................................................................................................................................................................................................................................1711.001.00--------------------------1.00------
.....................GTCACAGAGGAAATGATCAACC...............................................................................................................................................................................................................2211.001.00------------1.00--------------------
..................................................GTACGTGCAAGAATGGATGGAGCCG...............................................................................................................................................................................2511.001.00-------------------------1.00-------
........................................................GCAAGAATGGATGGAGCCG...............................................................................................................................................................................1911.001.001.00--------------------------------
...............................AAATGATCAACCCCTACAG........................................................................................................................................................................................................1911.001.00-----1.00---------------------------
...........................................................AGAATGGATGGAGCCGTCTTTTT........................................................................................................................................................................2311.001.00-----------------------------1.00---
..................TTCGTCACAGAGGAAATG......................................................................................................................................................................................................................1811.001.00-----1.00---------------------------
.......ATTACTTGAATTTCGTC..................................................................................................................................................................................................................................1711.001.00-------1.00-------------------------
.................TTTCGTCACAGAGGAAATGA.....................................................................................................................................................................................................................2011.001.00-------------------------------1.00-
.................................................................................................................................CTGTTGGTCGGCTCAGGC.......................................................................................................1811.001.00-----1.00---------------------------
....................................................................................................................................TTGGTCGGCTCAGGCC......................................................................................................1611.001.00----1.00----------------------------
..............GAATTTCGTCACAGAGGAAATGATCA..................................................................................................................................................................................................................2611.001.00-------------1.00-------------------
...............AATTTCGTCACAGAG............................................................................................................................................................................................................................1520.500.50--------0.50------------------------
...............AATTTCGTCACAGAGG...........................................................................................................................................................................................................................1620.500.50--------0.50------------------------
..........................................................................................................................................................................................GCAGGATGTGGGGCGG................................................1640.250.25--------------------------------0.25

Antisense strand
TTTAGGAATTACTTGAATTTCGTCACAGAGGAAATGATCAACCCCTACAGGTACGTGCAAGAATGGATGGAGCCGTCTTTTTTCATTATTTTAATGTGAGGCAGGAAGCAGCCACATTCCACTCGAAGCCTGTTGGTCGGCTCAGGCCAGTTCACAGTCGGGCCGTGATTGGGGCCTCTGGGGCCAGCAGGATGTGGGGCGGGTGGCTTCTGGCCGTGTGTCCTTGAGCACGGTTTCTCCAGAGAACGGG
....................................................(((.((..((.((((((..((..((((.((((((.........)))))).))))....))..))).))).))...)).)))(((((......))))).....................................................................................................
..................................................51....................................................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................................................................CCCGTTCTCTGGAGAAACCG 2012.002.00-2.00-------------------------------
.................................................................................................................................................CGGCCCGACTGTGAACTGGC..................................................................................... 2011.001.001.00--------------------------------
..........................................................................................................................................................................................GCAGGATGTGGGGCGGAATA............................................ 2041.000.00------------------------1.00--------
.........................................CACGTACCTGTAGGGG................................................................................................................................................................................................. 1611.001.00-----1.00---------------------------
........TTACTTGAATTTCGTCGCGC.............................................................................................................................................................................................................................. 201.000.00--------------------1.00------------
.........................................CCATCCATTCTTGCACGTACCTGTAGGGG.................................................................................................................................................................................... 2911.001.001.00--------------------------------
.........................................TCTTGCACGTACCTGTAGGGG............................................................................................................................................................................................ 2111.001.00--1.00------------------------------