| (2) BRAIN | (4) CELL-LINE | (1) CERVIX | (3) LIVER | (4) OTHER | (1) SKIN | (1) UTERUS |
| TAGACTTTAGAGGGCCTGGAGCTATGTGACTCTTCTTTCTGTAACAAGTCAAGGGATGCTTAGGTGCTTCCCACAGCAGGTGCACGGCCCACTGGGCTCAGCTGCCGACTGAACGTGTGCCCCAGTCGTACCAGGACACGTGCTGGGAACCAAGTATGTGGTGTCTGTTTCTAAGGTTTGTTTGTTTGTTTGTTTTTAAGGTCTTGTGGTCTGATTCTTCAATAACATCAGTAACCAAATCTTCCTCTGA ...................................................................................................................................((((.((((((((((...))).)))))))...))))................................................................................... ...............................................................................................................................128.....................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR040018(GSM532903) G701N. (cervix) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR343334 | SRR189784 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTCC.................................................... | 25 | 8.00 | 0.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTTACC................................................. | 28 | 6.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTACC................................................... | 26 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTTT................................................... | 26 | 4.00 | 0.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTCG...................................................... | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTGAC................................................... | 26 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTGCT................................................... | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCGAC................................................... | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTTCC........................................................ | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAGGTTTGTTTGTTTGTTTGTTTTCC.................................................... | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................AGGACACGTGCTGGGAACCA.................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTAC.................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................CAGGACACGTGCTGGGAAC.................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTGTCC.................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTCGTT.................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTCGT..................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................GGTTTGTTTGTTTGTTTGTTTCTCC................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAGGTTTGTTTGTTTGTTTGTTTTACCT.................................................. | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCGCT................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTCGT......................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTATT................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTTCCC................................................. | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCACC................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................TAACCAAATCTTCCTCTG. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCTC.................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTGGC.................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAGGTTTGTTTGTTTGTTTGTTTA...................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTCCC................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTCTG...................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTCTGG................................................. | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCGC.................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTCTGC....................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTACCG.................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........GAGGGCCTGGAGCTAGTGG.............................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTGCTC.................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTATTT................................................. | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAGGTTTGTTTGTTTGTTTTGCC....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGATTC...................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................GGTTTGTTTGTTTGTTTGTTTTACC................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTTTCA................................................. | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTCGAG................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAGGTTTGTTTGTTTGTTCTTG........................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTATG.................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTTTTA.................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTCTTG......................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTGTTC..................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AGGTTTGTTTGTTTGTTTGTTTTCCT................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAAGGTTTGTTTGTTTGTTTGTTT....................................................... | 24 | 5 | 0.20 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAAGGTTTGTTTGTTTGTTTG.......................................................... | 21 | 7 | 0.14 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TAGACTTTAGAGGGCCTGGAGCTATGTGACTCTTCTTTCTGTAACAAGTCAAGGGATGCTTAGGTGCTTCCCACAGCAGGTGCACGGCCCACTGGGCTCAGCTGCCGACTGAACGTGTGCCCCAGTCGTACCAGGACACGTGCTGGGAACCAAGTATGTGGTGTCTGTTTCTAAGGTTTGTTTGTTTGTTTGTTTTTAAGGTCTTGTGGTCTGATTCTTCAATAACATCAGTAACCAAATCTTCCTCTGA ...................................................................................................................................((((.((((((((((...))).)))))))...))))................................................................................... ...............................................................................................................................128.....................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR040018(GSM532903) G701N. (cervix) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR343334 | SRR189784 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................ACCAAATCTTCCTCTAGAT | 19 | 4.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | |
| .........................................................................................................................................................................................................................................ACCAAATCTTCCTCTGAGA | 19 | 3.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...........................................................................................................................................................ATGTGGTGTCTGTTTCCAG............................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................CGTGCTGGGAACCAAGCATA............................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TGTTTCTAAGGTTTGTCAAA................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................ACCAAATCTTCCTCTAGA | 18 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |