| (8) B-CELL | (3) BRAIN | (3) BREAST | (10) CELL-LINE | (1) HELA | (1) LIVER | (2) OTHER | (1) RRP40.ip | (4) SKIN | (1) XRN.ip |
| CCACCTTCTCAACGAGGCTTTTCCTGGCTGGCTTTGCTGAAACCACGCCCTCAGCCCACTACCAGATCCCCTTCTCCTGGACGGGTGGTTGGCTTTAATACAGTTCTCACTACTGCTTGGCCTTGGGCTACATATTTGTTTTTTGTTATCTGCTTCCTCAAAGAACATATGCTTCCCGTAGTGCACTTTTCACTCCTCAGGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTGGCCAGTGTG ...........................................................................((.((.((((..((.((((.......))))......))..)))).))..))............................................................................................................................ ........................................................................73....................................................127......................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033719(GSM497064) 6hr Activated B cell line (ABC158). (B cell) | SRR033720(GSM497065) EBV activated B cell line (EBV159). (B cell) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033723(GSM497068) L1236 cell line (L1236). (B cell) | SRR189784 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033710(GSM497055) GCB DLBCL (GCB385). (B cell) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR039636(GSM518473) THP1_cyto_sRNAs. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR029130(GSM416759) DLD2. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................TTCTCACTACTGCTTGACTA............................................................................................................................... | 20 | 49.00 | 0.00 | 16.00 | 8.00 | 8.00 | 5.00 | - | 3.00 | - | 3.00 | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | |
| .............................................................................TGGACGGGTGGTTGGCT............................................................................................................................................................ | 17 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................TGGACGGGTGGTTGGCTTTA......................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................AGATCCCCTTCTCCTGGACGGGTGGTCGGC............................................................................................................................................................. | 30 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TAGTGCACTTTTCACGTCG..................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................ACTACCAGATCCCCTTCTCCTGGACGGGT.................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................CTCACTACTGCTTGGACAG.............................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................TTCTCACTACTGCTTGCCTA............................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................CTTCCTCAAAGAACATATG............................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TTCTCACTACTGCTTTTA................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................TTGTTTTTTGTTATCTTGT................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................ATATGCTTCCCGTAGTACCA................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TAGTGCACTTTTCACCG....................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TAGTGCACTTTTCACGGTC..................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................ATCCCCTTCTCCTGGACGGGTGGTTGGCTC........................................................................................................................................................... | 30 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................TTCTCACTACTGCTTTTTT................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................CTTACCAGCTTCCAGTCTC................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .....................................................................................................................................ATTTGTTTTTTGTTATTTC.................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................ATTTGTTTTTTGTTATCT................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ..................................................................................................................................................................................................CCTCAGGAACTCTGGC........................................ | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| CCACCTTCTCAACGAGGCTTTTCCTGGCTGGCTTTGCTGAAACCACGCCCTCAGCCCACTACCAGATCCCCTTCTCCTGGACGGGTGGTTGGCTTTAATACAGTTCTCACTACTGCTTGGCCTTGGGCTACATATTTGTTTTTTGTTATCTGCTTCCTCAAAGAACATATGCTTCCCGTAGTGCACTTTTCACTCCTCAGGAACTCTGGCGCCCCTTACCAGCTTCCAGTCTCTCGAGGTGGCCAGTGTG ...........................................................................((.((.((((..((.((((.......))))......))..)))).))..))............................................................................................................................ ........................................................................73....................................................127......................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033719(GSM497064) 6hr Activated B cell line (ABC158). (B cell) | SRR033720(GSM497065) EBV activated B cell line (EBV159). (B cell) | SRR033718(GSM497063) Multiple Myeloma (U266). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033723(GSM497068) L1236 cell line (L1236). (B cell) | SRR189784 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033710(GSM497055) GCB DLBCL (GCB385). (B cell) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | TAX577739(Rovira) total RNA. (breast) | SRR039636(GSM518473) THP1_cyto_sRNAs. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR029130(GSM416759) DLD2. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................ACAGTTCTCACTACTGG...................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................TTATCTGCTTCCTCATAG....................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................AGAGACTGGAAGCTGGTAAG................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TGTTATCTGCTTCCTCAGAGG...................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................CCAGGAGAAGGGGATC.......................................................................................................................................................................... | 16 | 3 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................AAACCACGCCCTCAGCTGTG............................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................GTTATCTGCTTCCTCAG......................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |