ID: uc002fhd.2_intron_7_0_chr16_84028294_f.5p
GENE: (8)
chr16:84028244-84028493+


(1)
AGO2.ip
(11)
B-CELL
(17)
BREAST
(25)
CELL-LINE
(7)
CERVIX
(2)
HEART
(1)
KIDNEY
(10)
LIVER
(2)
OTHER
(1)
RRP40.ip
(6)
SKIN
(1)
TESTES
(3)
UTERUS

Sense strand
AAGCCCAGATCAGCCGCTTGGCAGAGCTGATTGGGAGGCTGGAGAGCAAAGTAAGCCCTGGCCTGACCACGGCGTCTACTCCTTCCAACCCCTGAGGGAGTGCAGAGTTAAGCCTGGAGTTCAGGACAAAAGTCTGGGCTGCAGAGGGGCCAGGGAACCATGAAAAAGACATCCCCCAGGTGGGGCGTGGAGCTGCCGAGGACGAAGCTAAGGATCAAACCCCGGGGGATGCTCGTGTTGTTCAGGCCCA
........................................................................................((((((.((((((............(((.((..((.(((....)))))..)).)))..((.........)).........)).)))).)))).))...................................................................
.......................................................................................88..............................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038861(GSM458544)
MM466. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR038862(GSM458545)
MM472. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577739(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR038854(GSM458537)
MM653. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
TAX577453(Rovira)
total RNA. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
..................................................................................................................................................................AAAAAGACATCCCCCACA......................................................................1883.000.00-1.007.008.006.006.006.003.004.004.001.002.002.002.001.002.001.00-2.00--2.003.00---3.001.00---1.00-1.001.001.00---2.00--1.00-2.00--------1.001.00--1.00----------1.00---1.00---1.00----1.00------
..................................................................................................................................................................AAAAAGACATCCCCCACCA.....................................................................1960.000.007.008.003.005.004.001.001.00-1.001.001.00---2.002.003.002.00-2.001.001.00--1.001.00---1.00-------1.00-----1.00-1.00------1.00---1.00-1.00-----------1.001.00--1.00---1.00-1.00--1.00----
...................................................................................................................................................................AAAAGACATCCCCCACCA.....................................................................1842.000.009.008.002.002.002.002.00-2.00-1.00-1.001.00-1.00----------2.00-----1.00-1.00---1.00-----1.00-----1.00----------1.001.00---1.00----------------1.00-----
...................................................................................................................................................................AAAAGACATCCCCCACA......................................................................1712.000.003.001.00---------------------2.001.00---------1.00-----------------------------1.00----1.00---------1.00-----1.00--
..................................................................................................................................................................AAAAAGACATCCCCCACC......................................................................1810.000.002.00----------1.00-----1.00--1.00---------1.00---------1.00--------------1.00---1.00---------------1.00------------
..................................................................................................................................................................AAAAAGACATCCCCCACAA.....................................................................197.000.00--1.00--2.00-------1.00---1.00-----------------------1.00--------------------1.00-------------------------
...................................................................................................................................................................AAAAGACATCCCCCACAA.....................................................................186.000.00--1.00---3.00-1.00----------------------------------------------------------------1.00--------------
...................................................................................................................................................................AAAAGACATCCCCCACC......................................................................174.000.002.00-------------------1.00---------------------1.00---------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCACACC....................................................................202.000.001.00----------------------------------1.00----------------------------------------------------
.................................................................................................................................................................GAAAAAGACATCCCCCACCA.....................................................................202.000.00-------------1.00-------------------------------------------------1.00------------------------
...................................................................................................................................................................AAAAGACATCCCCCACCAA....................................................................192.000.00--------------------------------------2.00-------------------------------------------------
...................GGCAGAGCTGATTGGGAGGCTGGAG..............................................................................................................................................................................................................2512.002.00--------------------------------2.00-------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCACAAA....................................................................202.000.00-------1.00-------------------1.00------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCACAG.....................................................................192.000.00--1.00---------------------------1.00---------------------------------------------------------
............................................................................................TGAGGGAGTGCAGAGTCTAG..........................................................................................................................................201.000.00------------------------------------1.00---------------------------------------------------
.....................CAGAGCTGATTGGGAGGCTGGAGAGC...........................................................................................................................................................................................................2611.001.00----------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCACAAA....................................................................191.000.00------------1.00---------------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCATA......................................................................181.000.00----------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCACAC.....................................................................181.000.00--------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCAACCA....................................................................201.000.00-------------------1.00--------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCACAGT....................................................................201.000.00----------1.00-----------------------------------------------------------------------------
..............................TTGGGAGGCTGGAGAGCCGGA.......................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------------1.00---
.................................................................................................................................................................GAAAAAGACATCCCCCACC......................................................................191.000.00---------------------------------------------------------------------------------------1.00
...................................................................................................................................................................AAAAGACATCCCCCACACA....................................................................191.000.00-----------------------------1.00----------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCACCC.....................................................................191.000.00------------------------------------------------------------------1.00---------------------
.................................GGAGGCTGGAGAGCAAAATA.....................................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------1.00----------
..................................................................................................................................................................AAAAAGACATCCCCCACAC.....................................................................191.000.00---1.00------------------------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCATCA.....................................................................191.000.00-----1.00----------------------------------------------------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCAACA.....................................................................181.000.00---------------------------------------------------1.00------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCATCA.....................................................................181.000.00-------1.00--------------------------------------------------------------------------------
...........AGCCGCTTGGCAGAGCTGATTGGGAGGCTGGAGAGC...........................................................................................................................................................................................................3611.001.00----------------------------------------------1.00-----------------------------------------
............................................................................................................................................................................................GGAGCTGCCGAGGACGAAGCT.........................................2111.001.00----------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCAACCA....................................................................191.000.00-------1.00--------------------------------------------------------------------------------
...................................................................................................................................GTCTGGGCTGCAGAGGAAAA...................................................................................................201.000.00-----------------------------------------1.00----------------------------------------------
...................................................................................................................................................................AAAAGACATCCCCCACACC....................................................................191.000.00--1.00-------------------------------------------------------------------------------------
................................GGGAGGCTGGAGAGCAAA........................................................................................................................................................................................................1840.250.25----------0.25-----------------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCCGCA......................................................................1860.170.17--0.17-------------------------------------------------------------------------------------
..................................................................................................................................................................AAAAAGACATCCCCC.........................................................................1560.170.17---------------------------------------------0.17------------------------------------------

Antisense strand
AAGCCCAGATCAGCCGCTTGGCAGAGCTGATTGGGAGGCTGGAGAGCAAAGTAAGCCCTGGCCTGACCACGGCGTCTACTCCTTCCAACCCCTGAGGGAGTGCAGAGTTAAGCCTGGAGTTCAGGACAAAAGTCTGGGCTGCAGAGGGGCCAGGGAACCATGAAAAAGACATCCCCCAGGTGGGGCGTGGAGCTGCCGAGGACGAAGCTAAGGATCAAACCCCGGGGGATGCTCGTGTTGTTCAGGCCCA
........................................................................................((((((.((((((............(((.((..((.(((....)))))..)).)))..((.........)).........)).)))).)))).))...................................................................
.......................................................................................88..............................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR038861(GSM458544)
MM466. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR038862(GSM458545)
MM472. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
TAX577579(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577739(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR038854(GSM458537)
MM653. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
TAX577453(Rovira)
total RNA. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
..........................................................................................................................................................................................GTGGAGCTGCCGAGGACA.............................................. 183.000.00-----------------------1.001.00-----------------------1.00---------------------------------------
.................................................................................................GAGTGCAGAGTTAAGACT....................................................................................................................................... 181.000.00--------------------------------------------------------------------------------------1.00-
..........................................................................................................................................................................................GTGGAGCTGCCGAGGATGT............................................. 191.000.00------------------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................GCTGCCGAGGACGAACTGT........................................ 191.000.00-------------------------------------------------------------------1.00--------------------
..........................................................................................................................................................................................GTGGAGCTGCCGAGGACG.............................................. 181.000.00------------------1.00---------------------------------------------------------------------
...............................................................................................GGGAGTGCAGAGTTAACT......................................................................................................................................... 181.000.00-----------------------------------------------1.00----------------------------------------
........................................................................................................................................................................................GCGTGGAGCTGCCGATGGG............................................... 191.000.00----------------------------1.00-----------------------------------------------------------
..............................................................................................AGGGAGTGCAGAGTTAAG.......................................................................................................................................... 181.000.00----------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................GTGGAGCTGCCGAGGACCT............................................. 191.000.00--------------------------------------------------1.00-------------------------------------